BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490080 Length=1055 Score E Sequences producing significant alignments: (Bits) Value AT4G04210.1 | Symbols: PUX4 | plant UBX domain containing prote... 1474 0.0 AT4G22150.1 | Symbols: PUX3 | plant UBX domain-containing prote... 527 9e-149 > AT4G04210.1 | Symbols: PUX4 | plant UBX domain containing protein 4 | chr4:2030319-2031853 FORWARD LENGTH=1167 Length=1167 Score = 1474 bits (798), Expect = 0.0 Identities = 977/1061 (92%), Gaps = 21/1061 (2%) Strand=Plus/Plus Query 1 AAAAAAGAGAATGTCTTCGAAAGACAAGAAACCGGCG-AGACCATCGACTAGTCGTGGTG 59 |||||| | ||||||||||||||||||||||||| || || ||||||| ||||||||||| Sbjct 63 AAAAAACACAATGTCTTCGAAAGACAAGAAACCGTCGAAG-CCATCGAGTAGTCGTGGTG 121 Query 60 GAGTCCGAACTCTTTCCGATCTTAATCGTAGGTCTGGTCCAGATTCCGACAGTGATTCCG 119 || |||||||||||||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 122 GAATCCGAACTCTTTCCGATCTTAACCGTAGGTCTGGTCCTGACTCCGACAGTGATTCCG 181 Query 120 ATGGACCTCAAGAATACTACACCGGCGGTGA-AAGAAGTGGTATGCTT-GTTCAAGATCC 177 |||| || |||||||||||||| || ||||| || |||||||||| || ||||||||||| Sbjct 182 ATGGTCCACAAGAATACTACACAGGTGGTGAGAA-AAGTGGTATG-TTAGTTCAAGATCC 239 Query 178 ATCGAAAAAAGATGATGTTGATGAGATATTTAATCAAGCTAGACAATTAGGAGCTGTGGA 237 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 240 ATCGAAAAAAGATGATGTTGATGAGATATTTAATCAAGCTAGACAACTAGGAGCTGTAGA 299 Query 238 AGGACCTCTTGAGCCTCCTTCGAGTTCAAGGAGTTTCACTGGAACTGGGAGATCGCTCTC 297 ||||||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| || Sbjct 300 AGGACCTCTTGAGCCACCTCCGAGTTCCAGGAGTTTCACTGGAACTGGTAGATTGCTTTC 359 Query 298 TGGTGAAAATATGTCTACTGGTCTTCAACAGCCTGAGCCTGTGGTTCACAACATTGTTTT 357 |||||||||| || |||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 360 TGGTGAAAATGTGCCTACTGGTAATCAACAGCCTGAGCCTGTTGTTCACAACATTGTTTT 419 Query 358 CTGGTCTAATGGATTCACTATAGATGATGGTCCTTTGAGGAAATTGGATGATCCTGAGAA 417 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 420 CTGGTCTAATGGTTTCACTATTGATGATGGTCCTTTGAGGAAATTGGATGATCCTGAGAA 479 Query 418 TGCATTGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCAGA 477 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 480 TGCATCGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCCGA 539 Query 478 TAAAAGAGCCCCGGTTCATGTCAATTTGATGCGAAGGGAAGAGAAATGCCCTGAAAGACA 537 || |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 540 TAGAAGAGCTCCGGTTCATGTCAACTTGATGCGAAAGGAAGAGAAATGCCCTGAAAGACA 599 Query 538 GAAACGTAGGGTTTCATTTCAAGGTGTTGGAAGAACTCTAGGTGGTAGCAATGATGGCAG 597 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || Sbjct 600 GAAACGTAGGGTTTCATTTCAGGGTGTTGGAAGAACTCTAGGTGGTAGCAATGAAGGTAG 659 Query 598 CGGAAGTAGCTCCCCTGTTGCTCCAGACTCCGCTGCTATTCCCATCCAAACCAACGAAAC 657 |||||||||||| ||||| ||||||||||||||| | ||||||||||||||| ||| | Sbjct 660 CGGAAGTAGCTCACCTGTGGCTCCAGACTCCGCTCCCATTCCCATCCAAACC---GAA-C 715 Query 658 CGTATCAGCACCACCTCCAAGTCTTGTAATAGATGAAACTATTCCAATCACATCGATACA 717 | | |||||| ||| ||||||||||||||||||||| |||||| |||||||||||| Sbjct 716 C--A---GCACCATCTCAAAGTCTTGTAATAGATGAAACCGTTCCAACCACATCGATACA 770 Query 718 GCTTAGACTAGCGGATGGGACACGTCTGGTGGGTAAGTTCAATCACCATCACACGGTCAA 777 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 771 GCTTAGACTAGCGGATGGGACACGTCTGGTGGCTAAGTTCAATCACCATCACACGGTCAA 830 Query 778 CGACATTCGCGGTTTCATTGACTCCTCTCGTCCTGGAGC-TCCGGTGAACTACCAGCTTC 836 |||||||||||||||||||||||| ||||| |||||||| || | ||||||||||||||| Sbjct 831 CGACATTCGCGGTTTCATTGACTCATCTCGACCTGGAGCCTC-GTTGAACTACCAGCTTC 889 Query 837 AGACAATGGGATTCCCACCTAAGCCTTTGACTGATCTCACTCAGACCATCGAAGAAGCTG 896 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 890 AGACAATGGGGTTCCCACCTAAGCCTTTGACTGATCTCACTCAGACCATTGAAGAAGCTG 949 Query 897 GTCTGGCCAACTCTGTCGTTCTTCAGAAATTCTAGAAAATTCTACAAGGTTTG-TTCTTT 955 |||| ||||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct 950 GTCTCGCCAACTCTGTTGTTCTTCAGAAATTCTAGAAAATTCTACAAGGTGTGGTTCTTT 1009 Query 956 TTTGTCTTTCTATATGTATTATTATGAGATCTCCATAACTGTTATAGTAACCAGATCTTT 1015 || |||| |||||||| ||||| ||||||| | |||||||||| |||||||||| ||||| Sbjct 1010 TT-GTCTATCTATATGCATTATAATGAGATTTTCATAACTGTTGTAGTAACCAGGTCTTT 1068 Query 1016 AAAATGTAAGTTACTTCTTCGATT-TGTATACGCAGCATAA 1055 |||||||||||||||||||| | | ||||||| |||||||| Sbjct 1069 AAAATGTAAGTTACTTCTTC-ACTCTGTATACTCAGCATAA 1108 > AT4G22150.1 | Symbols: PUX3 | plant UBX domain-containing protein 3 | chr4:11731138-11732901 REVERSE LENGTH=1339 Length=1339 Score = 527 bits (285), Expect = 9e-149 Identities = 502/603 (83%), Gaps = 30/603 (5%) Strand=Plus/Plus Query 7 GAGA-ATGTCTTCGAAAGACAAGAAACCGGCG-AGACCATCGACTAGTCG---TGGTGG- 60 |||| ||||| || || |||||||||| || || ||| | | | |||| |||||| Sbjct 292 GAGATATGTCGTCTAAGGACAAGAAACTATCGAAG-CCAACAAGTGGTCGTACTGGTGGT 350 Query 61 AGTCCGAACTCTTTCCGATCTTAATCGTAGGTCTGGTCCAGATTCCGACAGTGATTCCGA 120 | |||| || ||||||||||| || || || || | || |||||||| ||||| ||||| Sbjct 351 A-TCCGTACACTTTCCGATCTGAACCGAAGATCAGAACCTGATTCCGATAGTGACTCCGA 409 Query 121 TGGACCTCAAGAATACTACACCGGCGGTGAAAGAAGTGGTATGCTTGTTCAAGAT-C--C 177 ||||||||||||||||| |||||| || |||| |||||||||||||||||||||| | | Sbjct 410 TGGACCTCAAGAATACTTCACCGGTGGCGAAAAAAGTGGTATGCTTGTTCAAGATCCTAC 469 Query 178 -ATCG-A--AAAA-A-GATGATGTTGATGAGATATTTAATCAAGCTAGACAATTAGGAGC 231 | | | |||| | ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 470 AAAAGAACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAGCTAGGAGC 529 Query 232 TGTGGAAGGACCTCTTGAGCCTCCTTCGAGTTCAAGGAG-TTTCACTGGAACTGGGAGAT 290 |||||||||||||||||||| |||||||||||| || || ||| || ||||| || |||| Sbjct 530 TGTGGAAGGACCTCTTGAGCATCCTTCGAGTTCTAGAAGCTTT-ACAGGAACAGGAAGAT 588 Query 291 CGCTCTCTGGTGAAAATATGTCTACTGG-TCTTCAACAGCCTGAGCCTGTGGTTCACAAC 349 ||| ||||| |||| | || | || || |||||||||||||||||||||| ||||||| Sbjct 589 TGCTTTCTGGAGAAAGTGTGCCAAC-GGCTCTTCAACAGCCTGAGCCTGTGATTCACAAT 647 Query 350 ATTGTTTTCTGGTCTAATGGATTCACTATAGATGATGGTCCTTTGAGGAAATTGGATGAT 409 ||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| Sbjct 648 ATTATTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGAT 707 Query 410 CCTGAGAATGCATTGTTT-CTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGA 468 || |||||||| || ||| || || ||||||||||||||||| || |||||||||||||| Sbjct 708 CCAGAGAATGC-TTCTTTTCTTGATAGCATTCGAAAGTCTGAATGTCCGAAAGAGCTTGA 766 Query 469 GCCTGCAGATAAAAGAGCCCCGGTTCATGTCAAT-TTGATGCGAAGGGAAGAGAAATGCC 527 ||||| ||||||||||| || || ||||| ||| || ||| |||| || ||||| |||| Sbjct 767 GCCTGTTGATAAAAGAGCTCCTGTACATGTTAATCTT-ATGAGAAGAGATGAGAAGTGCC 825 Query 528 CTGAAAGACAGAAACG-T-AGGGTTTCATTTCAAGGTGTTGGAAGAACTCTAGGTGGTAG 585 |||| | | ||||| | | | ||||||||||||||| |||||||| |||||||||||| | Sbjct 826 CTGAGA-A-AGAAAAGCTTAAGGTTTCATTTCAAGGAGTTGGAAGGACTCTAGGTGGT-G 882 Query 586 CAA 588 ||| Sbjct 883 CAA 885 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51741171410 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5