BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490089 Length=3063 Score E Sequences producing significant alignments: (Bits) Value AT4G04350.1 | Symbols: EMB2369 | tRNA synthetase class I (I, L,... 4903 0.0 > AT4G04350.1 | Symbols: EMB2369 | tRNA synthetase class I (I, L, M and V) family protein | chr4:2128090-2133150 FORWARD LENGTH=3081 Length=3081 Score = 4903 bits (2655), Expect = 0.0 Identities = 2939/3075 (96%), Gaps = 23/3075 (1%) Strand=Plus/Plus Query 1 TCGTCTCCGGCaaaaaaaaaCCAGAATGAG--CTC-TCATCAAATCCTCCAATTTCGCTC 57 ||||||||||| ||| |||||||||||||| ||| |||||||||||||||| |||| || Sbjct 15 TCGTCTCCGGCGAAACAAAACCAGAATGAGCTCTCATCATCAAATCCTCCAAATTCGTTC 74 Query 58 TGACCCATTTGTACTTTCACACTGTTGCCGCCATACACACCTCACCAGCTCTCTAACGCT 117 |||||||||||| || ||||||||||||||||| |||| ||||||||||||||| ||||| Sbjct 75 TGACCCATTTGTTCTATCACACTGTTGCCGCCACACACGCCTCACCAGCTCTCTTACGCT 134 Query 118 TCAATCTCCTCTAAAGCAGCCTTTTTCCGGTCTTCGTTTCCGGTGGCGTCGCTCTAATCA 177 ||||||||||||||||||||| ||||| |||| | |||||| ||||| |||||| ||| Sbjct 135 TCAATCTCCTCTAAAGCAGCCCTTTTCATGTCTCCCTTTCCGTTGGCGCCGCTCTTATCG 194 Query 178 CGGCGGAGTCAGGAGCTCAACGACGGAGGCTCA-GAGTAACAAAGAAGAAGCTTTGGTGT 236 |||||||||||||||||||||||||||| |||| | ||| |||| ||||||||||||||| Sbjct 195 CGGCGGAGTCAGGAGCTCAACGACGGAGACTCATG-GTAGCAAAAAAGAAGCTTTGGTGT 253 Query 237 CGGAAACAGCGACGACGA-CGATTGAATTGAAAAGGGTCTATCCATTTCACGAAATTGAG 295 ||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||| Sbjct 254 CGGAAACGGCGACTAC-ATCGATTGAATTGAAAAGGGTCTATCCATTTCACGAAATTGAA 312 Query 296 CCCAAGTGGCAACGTTATTGGGAAGATAACCGAACTTTT-CGGACACCAGACGATGTCGA 354 |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || Sbjct 313 CCCAAGTGGCAACGTTATTGGGAAGATAACCGAA-TTTTCCGGACACCAGACGATGTTGA 371 Query 355 TACTTCGAAACCTAAGTTCTACGTCCTCGACATGTTTCCATATCCAAGTGGAGCAGGATT 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 TACTTCGAAACCTAAGTTCTACGTCCTCGACATGTTTCCATATCCAAGTGGAGCAGGATT 431 Query 415 ACATGTGGGACATCCATTGGGTTATACAGCAACTGATATTCTAGCGAGGCTTAGGCGAAT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 432 ACATGTGGGACATCCATTGGGTTATACAGCAACTGATATTCTAGCGAGGCTTAGGCGTAT 491 Query 475 GCAAGGTTACAATGT-TCTGCATCCTATGGGATGGGATGCTTTTGGATTGCCTGCAGAAC 533 ||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| |||| Sbjct 492 GCAAGGTTACAATGTGT-TGCATCCTATGGGTTGGGATGCTTTTGGATTGCCTGCTGAAC 550 Query 534 AATATGCTATTGAGACAGGAACCCATCCGAAAACTACGACATTAAAGAACATTGACCGCT 593 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 551 AATATGCTATTGAGACAGGAACCCATCCGAAAACTACGACATTGAAGAACATTGACCGCT 610 Query 594 TTCGTTTACAGCTCAAATCACTGGGCTTCTCATACGATTGGGACCGTGAGCTTTCTACAA 653 |||| || |||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 611 TTCGATTGCAGCTCAAATCATTGGGCTTCTCATACGATTGGGACCGTGAACTTTCTACAA 670 Query 654 CAGAGCCAGACTATTATAAATGGACACAATGGATCTTTCTTCAGCTTTATAAGAGAGGTT 713 ||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 671 CAGAGCCAGACTACTACAAATGGACACAATGGATCTTTCTTCAGCTTTATAAGAAAGGTT 730 Query 714 TGGCATATCAGGCTGAAGTACCCGTCAATTGGTGCCCAGCTCTTGGTACTGTTTTGGCCA 773 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 731 TGGCATATCAGGCTGAAGTACCGGTCAATTGGTGCCCGGCTCTTGGTACTGTTTTGGCCA 790 Query 774 ATGAGGAAGTGGTGGATGGTGTTAGTGAGCGTGGTGGCCACCCGGTTATAAGAAAGCCGA 833 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 ATGAAGAAGTGGTGGATGGTGTTAGTGAGCGTGGTGGCCACCCGGTTATAAGAAAGCCGA 850 Query 834 TGAGGCAATGGATGCTGAAGATTACTGCGTACGCTGATCGTCTTCTGGAAGATTTAGACG 893 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 851 TGAGGCAATGGATGCTGAAGATTACTGCGTACGCTGATCGTCTTCTAGAAGATTTGGACG 910 Query 894 AGCTCGAGTGGCCTGAAAGTATAAAGGAAATGCAAAGAAACTGGATAGGAAGATCCGAAG 953 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 911 AGCTTGAGTGGCCTGAAAGTATAAAGGAAATGCAAAGAAACTGGATAGGAAGATCCGAAG 970 Query 954 GAGCTGAATTGAATTTTTCATTTCTTGATGGCGAAGGCCGAGAAACCGACAAAAAGATTA 1013 ||||||| ||||| |||||| |||||||||| |||||||||||||| |||||| |||||| Sbjct 971 GAGCTGAGTTGAACTTTTCAATTCTTGATGGGGAAGGCCGAGAAACTGACAAAGAGATTA 1030 Query 1014 CAGTTTACACCACGAGGCCAGATACACTTTTTGGAGCAACTTACATGGTTGTGGCACCAG 1073 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1031 CAGTGTACACCACGAGGCCAGATACACTTTTTGGAGCAACTTACATGGTTGTGGCACCAG 1090 Query 1074 AACATCATTTGTTGTCTTACTTTGTAACCGCAGAACAGAAACAGCAAGTTGAGGAATACA 1133 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1091 AGCATCAGTTGTTGTCTTACTTTGTAACCGCAGAACAGAAACAGCAAGTTGAGGAATACA 1150 Query 1134 AAGATTTCGCTTCGAGAAAAAGTGATCTTGAGAGAACAGAACTTCAGAAGGACAAGACAG 1193 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1151 AAGATTTCGCTTCGAGGAAAAGTGATCTTGAGAGAACAGAACTTCAGAAGGACAAGACGG 1210 Query 1194 GCGTATTCACGGGATGTTATGCAAAAAATCCAGCTAATGGTGATGCTATTCCCATATGGG 1253 ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1211 GCGTATTTACGGGATGTTATGCGAAAAATCCAGCTAATGGAGATGCTATTCCCATATGGG 1270 Query 1254 TAGCTGACTATGTTCTAGCAAGTTATGGAACCGGAGCAATCATGGCAGTCCCAGCTCATG 1313 ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1271 TAGCTGATTATGTTCTAGCTAGTTATGGAACCGGAGCAATCATGGCGGTCCCAGCTCATG 1330 Query 1314 ATACTCGGGATAATGAGTTCGCGTTGAAGTATAACATTCCGATCAAGTGGGTAGTGAAAA 1373 ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || Sbjct 1331 ATACTCGGGATAATGAGTTTGCGTTGAAGTATAACATTCCCATCAAGTGGGTAGTGAGAA 1390 Query 1374 ATGAGGCAAATTCAAGTGATGATGCCAAGCAGGTTTATCCCGGATTGGGCATAATTGAAA 1433 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 1391 ATGAGGCAAATTCAAGTGATGATGCTAAGCAGGTTTATCCCGGATTGGGCATTATTGAAA 1450 Query 1434 ATTCATCAAGTTCAGAGACAGGACTTGACATAAATCAACTATCTAGCAAAGAAGCTGGTT 1493 |||| |||| || ||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 1451 ATTCTTCAACTTTAGAAACAGGACTTGACATAAATCAACTATCTAGCAAAGAAGCTGCTT 1510 Query 1494 TAAAAGTTATTGAATGGGCTGAGAGAACCGGAAATGGAAAGAAAAAGGTAAATTACAAGT 1553 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1511 TAAAAGTTATTGAATGGGCTGAGAGAACTGGCAATGGAAAGAAAAAGGTAAATTACAAGT 1570 Query 1554 TAAGGGATTGGCTATTTGCACGGCAGCGTTACTGGGGTGAACCTATCCCGATTTTAATTT 1613 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1571 TGAGGGATTGGCTATTTGCACGGCAGCGTTACTGGGGTGAACCTATCCCGATTTTAATTT 1630 Query 1614 TGGATGAGTCTGGTGAAACTATTGCTGTTTCAGAATCTGAACTGCCACTCACTTTGCCTG 1673 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 1631 TGGATGAGTCTGGTGAAACTATTGCTATTTCAGAATCTGAACTGCCCCTCACTTTGCCTG 1690 Query 1674 AGTTAAATGATTTTACGCCCACTGGAACAGGGGAACCACCACTGTCAAAAGCAGTTTCAT 1733 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1691 AGTTAAATGATTTTACGCCCACTGGAACAGGGGAACCACCACTGTCAAAAGCAGTTTCAT 1750 Query 1734 GGGTGAACATC-GTAGATCCCTT-AACAGGAAAACCTGCCAAAAGAGAAACAAGCACTAT 1791 ||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 1751 GGGTGAACA-CTGTAGAT-CCTTCAACAGGAAAACCTGCCAAAAGAGAAACAAGCACTAT 1808 Query 1792 GCCACAATGGGCTGGGTCTTGCTGGTACTATCTGAGATTCATGGACCCGAAAAACCCTGA 1851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1809 GCCACAATGGGCTGGGTCTTGCTGGTACTATCTGAGATTCATGGACCCGAAAAACCCTGA 1868 Query 1852 AGCATTAGTTGACAAGGAAAAAGAAAAATACTGGAGCCCAGTAGATGTATATGTCGGTGG 1911 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1869 AGCATTAGTTGACAAGGAAAAAGAAAAATACTGGAGCCCAGTAGATGTATATGTTGGTGG 1928 Query 1912 TGCTGAACATGCTGTTTTACATTTACTATACTCGAGGTTTTGGCACAAGGTACTTTATGA 1971 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1929 TGCTGAGCATGCTGTTTTACATTTACTATACTCGAGGTTTTGGCACAAGGTACTTTATGA 1988 Query 1972 CATTGGTGTTGTGTCTACAAAAGAACCATTCAAATGTGTCATAAATCAAGGAATCATCCT 2031 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1989 CATTGGTGTTGTGTCTACGAAAGAACCATTCAAATGTGTCATAAATCAAGGAATCATCCT 2048 Query 2032 TGGGGAAGTCCAATATACAGCTTGGAAAGATCAAGAAGGAAATTATGTATCTGCAGATAA 2091 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2049 TGGGGAAGTCCAATATACAGCTTGGAAAGATCAAGAAGGAAATTATGTATCTGCAGATAC 2108 Query 2092 TGAAGAACGGTTAAATGAACATCAACAAGTGACAATCCCGGAAGAAAAAGTTATGAAGTC 2151 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2109 TGAAGAACGGTTAAATGAACATCAACAAGTGACAATCCCGGAAGAAAAAGTTATCAAGTC 2168 Query 2152 CGGAGATCATTTTGTTCTGAAGGAGGATCCTAGCATTCGTCTGATTCCACGCGTTTATAA 2211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2169 CGGAGATCATTTTGTTCTGAAGGAGGATCCTAGCATTCGTCTGATTCCACGCGTTTATAA 2228 Query 2212 AATGAGCAAAAGTAGAGGAAATGTCGTAAATCCTGATGATGTTGTGTTAGAGCATGGTGC 2271 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 2229 AATGAGCAAAAGTAGAGGAAATGTCGTAAATCCTGATGATGTTGTATTAGAGTATGGTGC 2288 Query 2272 AGATTCTCTACGTCTCTATGAGATGTTCATGGGACCATTTAGGGACTCAAAAACTTGGAA 2331 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2289 AGATTCTCTACGTTTGTATGAGATGTTCATGGGACCATTTAGGGACTCAAAAACTTGGAA 2348 Query 2332 CACGAGTGGGATTGAAGGTGTGCATCGTTTCTTGGCAAGAACATGGAGACTAGTCATCGG 2391 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 2349 CACGAGTGGGATTGAAGGTGTGCATCGTTTCTTGGCAAGAACTTGGAGACTAGTCATTGG 2408 Query 2392 TTTGCCTCAATCCGACGGTTCTTTCAAAGATGGAACCATAGTGACTGATGATGAACCAAC 2451 ||||||||| || || ||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 2409 TTTGCCTCAGTCTGATGGTTCTTTCAAAGATGGAACCTTAGTAACTGATGACGAACCAAC 2468 Query 2452 CCTTGAACAACTCCGAACTCTTCATAAATGCATAGCTAAGGTGACAGAGGAAATTGAGAG 2511 ||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 2469 CCTTGAACAACTCCGAACTCTTCATAAATGCATTGCAAAGGTGACAGAGGAAATCGAGAG 2528 Query 2512 TACGCGATTCAACACGGGAATTTCAGGGATGATGGAGTTTGTTAATGCGGCATATAAGTG 2571 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2529 TACACGATTCAACACGGGAATTTCAGGGATGATGGAGTTTGTTAATGCGGCATATAAGTG 2588 Query 2572 GAATAATCAACCTAGAAGAATCATTGAGCCTTTTGTTCTTTTGCTCTCACCTTACGCACC 2631 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 2589 GAATAATCAACCTAGAGGAATCATTGAGCCTTTTGTTCTTTTGCTCTCACCTTACGCGCC 2648 Query 2632 TCACATGGCTGAAGAGCTTTGGTCACGGTTAGGCCATCCGAATTCTCTGGCCTATGAAAG 2691 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 2649 TCACATGGCTGAAGAGCTTTGGTCGCGGTTAGGCCATCCAAATTCTCTGGCCTATGAAAG 2708 Query 2692 GTTCCCTAAGGCAAACCCAGATTACTTAAAGAACACAACTATTGTTCTTCCAGTTCAGAT 2751 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2709 CTTCCCTAAGGCAAACCCGGATTACTTAAAGAACACAACTATTGTTCTTCCAGTTCAGAT 2768 Query 2752 AAACGGCAAAACAAGAGGCACCATAGAGGTTGAAGAAGGATGTTCTGAAGATGATGCTTT 2811 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2769 AAACGGCAAGACAAGAGGCACCATAGAGGTTGAAGAAGGATGCTCTGAAGATGATGCTTT 2828 Query 2812 TGTTCTAGCTTTACAGGACGAGAAACTCAGGAAATATCTAGATGGACAATCAATCAAGAA 2871 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2829 TGTTCTAGCTTCACAGGACGACAAACTCAGGAAATATCTAGATGGACAATCAATCAAGAA 2888 Query 2872 GCGAATCTATGTGCCTGGGAAGATCCTCAACGTTATCCTAGATCGGACTAATGTCAAGGT 2931 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2889 GCGAATCTATGTGCCTGGGAAGATCCTCAACGTTATCCTAGACCGGACTAATGTCAAGGT 2948 Query 2932 CGCCACAAAGTAGGATTTAGAAAGaaaaaaaaaCAATTACAGAACCTGTCAAATGAACAA 2991 | | |||||||||||||||||||||| ||| |||||||| |||||||||||||||||| Sbjct 2949 CACTACAAAGTAGGATTTAGAAAGAAGAAA---CAATTACAAAACCTGTCAAATGAACAA 3005 Query 2992 AATTTATTTCTCTATTGAATAGTTTCCATTATATAGAAAAAGATTCTTCTAG---CAAAA 3048 ||||| | |||||||||| |||||||||||||||||||||||||||| ||| ||||| Sbjct 3006 AATTT-TATCTCTATTGAG-AGTTTCCATTATATAGAAAAAGATTCTTTTAGAAGCAAAA 3063 Query 3049 GATCTGTTCTTAGAT 3063 ||||||||||||||| Sbjct 3064 GATCTGTTCTTAGAT 3078 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 152306838948 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5