BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490119 Length=1189 Score E Sequences producing significant alignments: (Bits) Value AT4G04860.1 | Symbols: DER2.2 | DERLIN-2.2 | chr4:2459880-24617... 1406 0.0 AT4G21810.1 | Symbols: DER2.1 | DERLIN-2.1 | chr4:11575096-1157... 785 0.0 > AT4G04860.1 | Symbols: DER2.2 | DERLIN-2.2 | chr4:2459880-2461739 FORWARD LENGTH=1351 Length=1351 Score = 1406 bits (761), Expect = 0.0 Identities = 925/1001 (92%), Gaps = 23/1001 (2%) Strand=Plus/Plus Query 1 AATTAAACAAATATCGCAAA-ACT-ATTTATT-TACACATTTAAATTTGTGTATATAC-A 56 |||||||||||||||||||| | | |||| ||||||| ||||||| ||||||||| | Sbjct 4 AATTAAACAAATATCGCAAATGTTAAACTATTATACACATATAAATTTCTGTATATACAA 63 Query 57 GACAAACGAAGAAGACGAATCTCTCAGTTTCG--ATTCGTTTCAAAGTTGTGCGTAGTTG 114 ||||||||||||||||||||||||||||||| |||||||| ||||||||||| | || Sbjct 64 AACAAACGAAGAAGACGAATCTCTCAGTTTCGTCGTTCGTTTCGAAGTTGTGCGTTGGTG 123 Query 115 AAATTTGAAATCTGAA-ACACTCATTGCAAACACCTTTGAAGAAGAAGAAGCTTTCATAG 173 |||||||||||||||| ||||||||||| || ||||| ||||||||||||| | || Sbjct 124 AAATTTGAAATCTGAATACACTCATTGC-AA-ACCTTAGAAGAAGAAGAAG--AAGA-AG 178 Query 174 ATTCCGTTGGGTT-C-TAGGGTTTCG-TGACGATTGGA-T-T-TTTGCTTGATCGGATCG 227 | | | || | || | || || || | || | | | |||| |||||||||||| Sbjct 179 AAGAAG-AAGCTTCCATA-GATTCCGTTG-GGCTTTTACTGTGTTTGATTGATCGGATCG 235 Query 228 ATTGCGATTAAGGAGAAGATATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGA 287 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 ATTGCGATTACGGAGAAGATATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGA 295 Query 288 TTATCACTCGCTCATATCTCACGGCGGCTGTTATCACCACCGTCGGATGTTCCCTCGATA 347 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TTATCACTCGCTCTTATCTCACGGCGGCTGTTATCACCACCGTCGGATGTTCCCTCGATA 355 Query 348 TTATATCTCCCTATAACCTCTATTTGAATCCGACCCTTGTGGTGAAGCAATACCAATATT 407 | |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 356 TCATATCTCCATATAACCTTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATATT 415 Query 408 GGCGTCTCGTTACAAATTTCTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATA 467 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 GGCGTCTCGTTACTAATTTCTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATA 475 Query 468 TGTTCTTTCTCGCACGATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTG 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 TGTTCTTTCTCGCACGATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTG 535 Query 528 CTGATTTCCTATACATGCTCCTATTTGGAGCTTCTGTTCTAACCGGTATTGTTC-TACTC 586 ||||||||||||||||||||||||||||||| |||||| ||||||||||||| | || || Sbjct 536 CTGATTTCCTATACATGCTCCTATTTGGAGCATCTGTTTTAACCGGTATTGTACTTA-TC 594 Query 587 GGTGGAATGATACCGTACTTGTCTGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCA 646 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 595 GGTGGAATGATACCATACTTGTCAGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCA 654 Query 647 TTAACTTTCATGATGGTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTC 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 TTAACTTTCATGATGGTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTC 714 Query 707 CTTGGTCTGTTCACCTTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATC 766 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 CTTGGTCTGTTCACCTTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATC 774 Query 767 CTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGGGTATGATAGCAGGTCACGCGTACTAC 826 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 775 CTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGGGTATGATAGCAGGTCACGCTTACTAC 834 Query 827 TTTCTGGCTGAGGTCTATCCACGAATGACTAATCGTCATCCTTTAAAGACTCCATCGTTC 886 |||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||| ||| Sbjct 835 TTTCTGGCTGAGGTTTATCCGCGAATGACTAATCGTCGTCCATTAAAGACTCCATCATTC 894 Query 887 CTCAAAGCCCTATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAAACGTGAGGTTT 946 |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 895 CTCAAAGCGTTATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAGATGTGAGGTTT 954 Query 947 GCTGCTGCGCCTTTTGATGAAATCCACCAAGACTGAGTCTG 987 |||||||||||||| ||||||||||||||||||||| |||| Sbjct 955 GCTGCTGCGCCTTTCGATGAAATCCACCAAGACTGATTCTG 995 Score = 235 bits (127), Expect = 7e-61 Identities = 181/206 (88%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 988 AGTTTGGCTTGTTGATCATATATATATGGTAAAAAGGCAGATGATACAC-AAAGTCTA-- 1044 |||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| Sbjct 1034 AGTTTGGCTTGTGGATCAGATATAAATGGTGCAAAGGCAGATGATACACAAAAGTCTATT 1093 Query 1045 TTAACTCTGACACGCTAGTTATGAAACCCACACACCCTAGTTTCTAGTAGTTGGGTGTGT 1104 || ||||||||||| ||| | || ||||||||||||||||||||||||||||||||||| Sbjct 1094 TTGACTCTGACACG-TAG-T-TGCGACCCACACACCCTAGTTTCTAGTAGTTGGGTGTGT 1150 Query 1105 TTTGGTTCCTTCCCTTTTCTCCCATCTCTTTATCTTGTTGTGTATACAAATTT-GCTTTG 1163 |||||||||||| |||| |||||||||||| ||||| ||||||||||||| | | |||| Sbjct 1151 TTTGGTTCCTTCTCTTTCCTCCCATCTCTTCATCTTTTTGTGTATACAAACATCG-TTTG 1209 Query 1164 CTCTTAGTGGTTATGGATATGGACAC 1189 || ||||||||||| |||||| |||| Sbjct 1210 CTTTTAGTGGTTATTGATATGAACAC 1235 > AT4G21810.1 | Symbols: DER2.1 | DERLIN-2.1 | chr4:11575096-11577195 REVERSE LENGTH=1176 Length=1176 Score = 785 bits (425), Expect = 0.0 Identities = 645/750 (86%), Gaps = 20/750 (3%) Strand=Plus/Plus Query 247 TATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGATTATCACTCGCTCATATCT 306 ||||||||| || |||||||| ||||| || |||||||||||||| || || || ||||| Sbjct 192 TATGGCTCAAGCCGTAGAAGAGTGGTACAAGCAGATGCCGATTATAACCCGGTCGTATCT 251 Query 307 CACGGCGGCTGTTA-TCACCACCGTCGGATGTTCCCTCGATATTATATCTCCCTATAACC 365 ||||||||||| || ||||||||||||| ||||| ||||| ||||||||||| ||||| | Sbjct 252 CACGGCGGCTG-TAGTCACCACCGTCGGGTGTTCGCTCGAGATTATATCTCCTTATAATC 310 Query 366 TCTATTTGAATCCGACCCTTGTGGTGAAGCAATACCAATAT-TGGCGTCTCGTTACAAAT 424 |||| | ||||| ||||||||||||||||||||||| | | |||||||| || |||||| Sbjct 311 TCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGT-TCTGGCGTCTTGTCACAAAT 369 Query 425 TT-CTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATATGTTCTTTCTCGCACG 483 || ||| |||||||| ||||||||||||||||| ||||||||||||| ||||| || || Sbjct 370 TTCCTT-TATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATGTTTTTTCTAGCTCG 428 Query 484 ATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTGCTGATTTCCTATACAT 543 |||||||||||| || ||||||||||| |||||||||||||| || |||||||| ||||| Sbjct 429 ATACTGCAAACTGCTCGAAGAAAACTCCTTCAGGGGAAAGACCGCGGATTTCCTTTACAT 488 Query 544 GCTCCTATTTGGAGCTTCTGTTCTAACCGGTATTGTTCTAC-TCGGTGGAATGATACCGT 602 |||| |||| || || |||||||||| ||||||||||| | | || ||||||||||| | Sbjct 489 GCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCT-CATTGGCGGAATGATACCTT 547 Query 603 ACTTGTCTGCATCATT-TGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATG 661 | ||||||| ||||| | | |||||||||||||||||||| ||||| |||||||||||| Sbjct 548 ATTTGTCTGTTTCATTCT-CCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATG 606 Query 662 GTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTCCTTGGTCTGTTCACC 721 |||||||||||||| |||||||||||||| || ||||||||||||||||| || ||||| Sbjct 607 GTCTATGTATGGAGTAAACAAAATCCTTACATCCACATGAGTTTCCTTGGCCTCTTCACT 666 Query 722 TTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATCCTTGTTGGTGCCAGT 781 |||||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||| Sbjct 667 TTCACAGCAGCTTATTTACCATGGGTACTTCTTGGATTCTCTATCCTTGTTGGTGCAAGT 726 Query 782 GCTTGGGTGGATCTTT-TGGGTATGATAGCAGGTCACGCGTACTACTTTC-TGGC-TGAG 838 || |||| |||| ||| |||| |||||||| || ||||| |||||| ||| |||| | Sbjct 727 GCATGGGGGGAT-TTTCTGGGAATGATAGCGGGCCACGCATACTAC-TTCTTGGCAT-TT 783 Query 839 GTCTATCCACGAATGACTAATCGTCAT-CCTTTAAAGACTCCATCGTTCCTCAAAGCCCT 897 || ||||| |||||||| |||| | | |||| ||| |||||||| |||||||| ||||| Sbjct 784 GTGTATCCCCGAATGACGGATCGACGTCCCTTGAAA-ACTCCATCTTTCCTCAAGGCCCT 842 Query 898 ATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAAACGTGAGGTTTGCTGC-TGCGC 956 |||||| ||||| ||||| ||| ||||| |||||||| | ||||| |||||| | ||||| Sbjct 843 ATTTGCTGATGAGCCAGTCGTGATTGCAAGGCCAGAAGATGTGAGATTTGCT-CATGCGC 901 Query 957 CTTTTGATGAAATCCACCAAGACTGAGTCT 986 |||||||||||||||||||||||||| ||| Sbjct 902 CTTTTGATGAAATCCACCAAGACTGAATCT 931 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58383233835 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5