BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490140 Length=1620 Score E Sequences producing significant alignments: (Bits) Value AT4G04955.1 | Symbols: ATALN, ALN | allantoinase | chr4:2522034... 2543 0.0 > AT4G04955.1 | Symbols: ATALN, ALN | allantoinase | chr4:2522034-2525280 REVERSE LENGTH=1809 Length=1809 Score = 2543 bits (1377), Expect = 0.0 Identities = 1544/1625 (95%), Gaps = 9/1625 (1%) Strand=Plus/Plus Query 1 AGAGAGATGGAGAGGACTTTGCTTCAATGGAGATTATTGCctcttctcgctctcatcgct 60 ||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||| | Sbjct 16 AGAGATATGGAGAGAACTTTGCTTCAATGGAGACTATTGCCTCTTCTCGCACTCATCGTT 75 Query 61 gctcttttctccatattcttcgcttctcctcgctcttTACAGGGGAATAATAGGTGTAGT 120 |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 76 GCTCTTTTCTCCTTCTTCTTCGCTTCTCCTCGCTCTTTACAGGGGAATAATAAGTGTAGT 135 Query 121 CTTCTTCCTCATGATCATTACTGGATCTCAAGTAAACGCATCGTCACACCTGATGGTCTC 180 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 136 CTTCTTCCTCATGATCATTACTGGATCTCAAGTAAACGCATCGTCACACCTAATGGTCTC 195 Query 181 ATCTCTGGTTCTGTGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGGAAGTTGAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 196 ATCTCTGGTTCTGTGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGGAAGTTGAT 255 Query 241 TGGCATAAGAGCCAAAGGAGTCGAGTGAAAGTGATTGACTATGGAGAAGCTGTCATCATG 300 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 256 TGGCATAAGAGTCAAAGGAGTCGAGTGAAAGTGATTGATTATGGAGAAGCTGTCCTCATG 315 Query 301 CCTGGTCTCATTGATGTGCATGTTCATCTTGATGATCCTGGAAGAAGTGAATGGGAAGGG 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 CCTGGTCTCATTGATGTGCATGTTCATCTTGATGATCCTGGAAGAAGTGAATGGGAAGG- 374 Query 361 TTTTC-TTCTGGAACTAAGGCTGCTGCTGCTGGGGGAATAACCACATTGGTTGACATGCC 419 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 375 TTTTCCTTCTGGAACTAAGGCTGCTGCTGCTGGGGGAATAACTACATTGGTTGACATGCC 434 Query 420 CTTAAACAGTTTCCCTTCAACTGTATTTCCTGAAACTTTGAAACTCAAGATTGAAGCTGC 479 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 435 CTTAAACAGTTTCCCTTCAACTGTATCTCCTGAAACTTTGAAACTCAAGATTGAAGCTGC 494 Query 480 GGAAAACAGAATACATGTTGATGTTGGTTTTTGGGGAGGTCTGGTGCCTGATAATGCACT 539 | ||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct 495 GAAAAACAGAATACATGTTGATGTTGGGTTCTGGGGAGGTCTGGTACCTGACAATGCACT 554 Query 540 CAACTCAAGTGCTCTTGAGTCTCTCTTAGATGCTGGAGTTCTTGGTCTCAAGTCCTTTAT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 555 CAACTCAAGTGCTCTTGAGTCTCTCTTAGATGCTGGAGTTCTTGGTCTCAAGTCCTTTAT 614 Query 600 GTGTCCTTCAGGAATCAACGATTTTCCAATGACAAACATAACTCATATAAAGGAAGGACT 659 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 615 GTGCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAGGAAGGACT 674 Query 660 ATCTGTATTAGCTAAATATAGACGACCATTGCTTGTACACGCAGAGGTTGAAAAAGACTT 719 |||||||||||||||||| | ||||||||||||||||||||||||| | || | |||||| Sbjct 675 ATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCAGAGATCGAGAGAGACTT 734 Query 720 AGAGATTGAAGATGGCAATGACAATGATCCTCGTTCTTATCTTACTTATTTAAAAACCAG 779 ||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||| Sbjct 735 AGAGATTGAAGATGGTAGTGAAAATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAG 794 Query 780 ACCAACTTCATGGGAGGAGGGAGCAATCCGAAACTTATTATCGGTTACTGAAAACACAAG 839 || |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 795 GCCTACTTCATGGGAGGAGGGAGCAATCAGAAACCTATTATCGGTTACTGAAAACACAAG 854 Query 840 GATTGGTGGTTCTGCAGAAGGAGCTCATGTTCATATTGTACATTTATCTGATGCCAGTTC 899 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 855 AATTGGTGGTTCTGCAGAAGGAGCTCATCTTCATATTGTACATTTATCTGATGCCAGTTC 914 Query 900 TTCCTTGGATTTGATAAAGGAAGCCAAAGGTAAAGGAGACAGTGTTACTGTTGAAACATG 959 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 915 TTCCTTGGATTTGATAAAGGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATG 974 Query 960 CCCGCATTACCTGGCTTTCTCAGCCGAAGAGATTCCAGAAGGTGATACTCGTTTCAAATG 1019 || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 975 TCCACATTACCTAGCTTTCTCAGCCGAAGAGATTCCAGAAGGTGATACTCGTTTCAAATG 1034 Query 1020 CTCCCCACCTATACGTGATGCAGCAAATAGAGAAAAGTTGTGGGAAGCTATGATGGAAGG 1079 |||||| |||||||||||||| |||||||||||||| |||||||||||| |||||||||| Sbjct 1035 CTCCCCTCCTATACGTGATGCGGCAAATAGAGAAAAATTGTGGGAAGCTTTGATGGAAGG 1094 Query 1080 AGACATTGATATGCTGAGCTCTGATCATTCACCTACAAAGCCTGAACTCAAACTTCTGAG 1139 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1095 AGACATTGATATGCTGAGCTCTGATCATTCACCTACAAAGCCTGAACTCAAACTTATGAG 1154 Query 1140 TGATGGTAACTTCTTGAAAGCATGGGGTGGGATATCATCTTTACAGTTTGTTCTTCCAAT 1199 |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 1155 TGATGGCAACTTCTTGAAAGCTTGGGGTGGGATATCTTCTTTACAGTTTGTTCTTCCTAT 1214 Query 1200 CACATGGTCTTATGGAAAAAAGTATGGAGTGACGCTCGAGAAGGTAGCTTCTTGGTGGAG 1259 |||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| Sbjct 1215 CACATGGTCTTATGGAAAAAAGTATGGAGTAACGCTCGAGCAGGTAACTTCTTGGTGGAG 1274 Query 1260 TGATAGGCCTTCTAAACTCGCTGGACTACACTCTAAGGGAGCGATTACGGTTGGAAAACA 1319 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1275 TGATAGGCCTTCCAAACTCGCTGGACTACACTCTAAGGGAGCGGTTACGGTTGGAAAACA 1334 Query 1320 CGCAGATTTTGTTGTTTGGGAACCTGAAGCCGAATTTGATCTCGATGAAGATCATCCAAT 1379 ||||||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1335 CGCAGATCTTGTTGTGTGGGAACCTGAAGCCGAATTTGATGTAGATGAAGATCATCCAAT 1394 Query 1380 TCACTTCAAACACCCCAGTATCTCAGCTTATTTGGGAAGAAGATTATCAGGCAGAGTGGT 1439 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1395 TCACTTCAAACACCCTAGTATCTCAGCTTATTTGGGAAGAAGATTATCAGGCAAAGTGGT 1454 Query 1440 TTCGACATTTGTGAGAGGGAACTTGGTCTTTGGAGAAGGCAAGCATGCTTATGATGCTTG 1499 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 1455 TTCGACATTTGTGAGAGGGAACTTGGTTTTTGGAGAAGGCAAGCATGCTTCTGATGCTTG 1514 Query 1500 CGGATCTCTGCAACTTGCGACT--TGAAACT-AAAAAGGGATTTAAAAGATCTTAATCGG 1556 ||| |||||||||||||| ||| | || || |||||||||||||||||||||| ||| | Sbjct 1515 CGGGTCTCTGCAACTTGCAACTACTTAA-CTTAAAAAGGGATTTAAAAGATCTTGATCTG 1573 Query 1557 CACCATTGTAA-CAAATGTAAATAGGTGATTAAAGAGTTGCTCTCATGTTGCTAGATGGT 1615 ||||||| ||| |||||||||||| | |||||| |||||||||||||||||| ||||||| Sbjct 1574 CACCATT-TAAACAAATGTAAATATGCGATTAA-GAGTTGCTCTCATGTTGCAAGATGGT 1631 Query 1616 TGATG 1620 ||||| Sbjct 1632 TGATG 1636 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80019668730 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5