BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490167 Length=893 Score E Sequences producing significant alignments: (Bits) Value AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II su... 1325 0.0 AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II sub... 459 3e-128 > AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II subunit Q-2 | chr4:2671822-2673243 REVERSE LENGTH=1037 Length=1037 Score = 1325 bits (717), Expect = 0.0 Identities = 841/899 (94%), Gaps = 16/899 (2%) Strand=Plus/Plus Query 1 GTCACATAACCAAACACCAAAAATTATAACTCAACAATCTTCACTAATCAAATTATTCAA 60 ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| Sbjct 1 GTCACATAACCAAACACCAAAAATTATAACTCAAC-A-CTTCACTAATC-AATTATTCAA 57 Query 61 AGCAGAT---aaaaaaaTGGCTCAAGCAGTGACTTCGATGGCTGGCTTACGTGGCGCATC 117 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 58 AGCAGATAAAAAAAAAATGGCTCAAGCAGTGACTTCGATGGCTGGCTTACGTGGAGCATC 117 Query 118 TCAGGCTGTCCTTGAAGGAAGTCTACAGATCAATGGCTCAAACCGTTTGAACATCTCAAG 177 |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 118 TCAGGCTGTCCTTGAAGGAAGTTTACAGATCAACGGCTCAAACCGTTTGAACATCTCAAG 177 Query 178 AGTCACGGTTGGATCTCAAAGAACCGGACTTGTGATCAGGGCTCAGCAGAACGAGTCAGT 237 |||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 178 AGTCTCGGTTGGGTCTCAGAGAACCGGACTTGTGATCAGGGCTCAGCAGAACGTGTCAGT 237 Query 238 ACCAGAAAGTAGTCGCAGGTCAGTGATCGGGCTCGTGGCGGCTGGTTTAGCCGGTGGTTC 297 |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| Sbjct 238 ACCAGAAAGTAGTCGCCGGTCAGTGATTGGACTCGTGGCGGCTGGTTTAGCCGGTGGTTC 297 Query 298 ATTCGTTAAAGCTGTTTTCGCCGAAGCTATTCCGATCAAAGTTGGTCCTCCTCCACCTCC 357 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 298 ATTCGTTAAAGCTGTTTTCGCCGAAGCTATTCCGATCAAAGTTGGTGGTCCTCCACTTCC 357 Query 358 TTCCGGTGGCCTACCTGGAACAGATAACTCAGACCAAGCAAGAGATTTTTCATTGGCATT 417 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 358 TTCCGGTGGCCTACCTGGAACAGATAACTCAGACCAAGCAAGAGACTTTTCATTGGCATT 417 Query 418 GAAAGACAGATTTTACATACAACCATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGA 477 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GAAAGATAGATTTTACATACAACCATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGA 477 Query 478 ATCTGCTAAAGAGATCATTAACGTTAAGTCACTGATCGACAAAAAAGCTTGGCCTTACGT 537 ||||||||||||||||| |||||||||||| | |||||||||||||||||||| || || Sbjct 478 TTCTGCTAAAGAGATCATCAACGTTAAGTCATTTATCGACAAAAAAGCTTGGCCCTATGT 537 Query 538 TCAGAACGATCTCCGTTTAAGAGCATCGTACCTTCGTTACGATCTTAACACCGTTATCTC 597 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 538 TCAGAACGATCTCCGTTTAAGAGCATCGTACCTCCGTTACGATCTCAACACCGTTATCTC 597 Query 598 CGCTAAGCCTAAAGAAGAGAA--AAAGAACCTTAAAGAACTTACCGGCAA-GCTCTTCGA 654 |||||||||||| |||||||| |||| ||||||||| || |||| ||| ||| ||| | Sbjct 598 CGCTAAGCCTAAGGAAGAGAAGCAAAG--CCTTAAAGATCTCACCG-CAAAGCTTTTCCA 654 Query 655 AACCATCGACAACTTGGACTATGCGGCGAGGTCTAAGAGCAGCCCAGATGCTGAGAAGTA 714 |||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 655 AACCATTGACAACTTGGACTATGCGGCGAGATCAAAGAGTAGCCCAGATGCTGAGAAGTA 714 Query 715 TTACTCAGAAACTGTCTCGAGTTTGAACAATGTTCTTGCCAAGCTTGGTTAATGAAGAAA 774 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 715 TTACTCAGAAACTGTCTCGAGTTTGAACAATGTTCTTGCCAAGCTCGGTTAATGAAGAAA 774 Query 775 GATTTGCTTTGTAATGTGTTGATGTCGATGTTATTATTATTATTACTATCCAAGTACTTT 834 || |||| ||||||| ||||||||||||||||||||| |||| | ||||||||||||||| Sbjct 775 GACTTGCGTTGTAATCTGTTGATGTCGATGTTATTATAATTACTGCTATCCAAGTACTTT 834 Query 835 GTCTTTCTCCTCCTCTTCTTAATTATCTGATCAAATCGGTTATTTCTAATTTCAGTTTC 893 ||||||||||| |||||||| | ||||||||||||||||| ||||||||||||||| Sbjct 835 GTCTTTCTCCTTCTCTTCTTG-T---CTGATCAAATCGGTTATCTCTAATTTCAGTTTC 889 > AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit QA | chr4:11334402-11335773 FORWARD LENGTH=905 Length=905 Score = 459 bits (248), Expect = 3e-128 Identities = 553/695 (80%), Gaps = 42/695 (6%) Strand=Plus/Plus Query 90 CTTCGATGGCTGGCTTACGTGGCGCATCTCAGGCTGTCCTTGAAGGAAGTC-TACAGATC 148 ||||||||| ||| |||| || ||||||| ||| || ||||||||||| | || ||||| Sbjct 49 CTTCGATGGGTGGATTACACGGTGCATCTCCGGCGGTTCTTGAAGGAAG-CTTAAAGATC 107 Query 149 AATGGCTCAAACCGTTTGAA---CATCT-CAAGAGTCACGGTTGGATCTCAAAGAACCGG 204 |||||||| | |||| |||| | ||| |||||| ||| ||| ||||||| | | Sbjct 108 AATGGCTCCAGCCGTCTGAATGGC-TCTGGAAGAGTGGCGG-TGG--CTCAAAGGTCTAG 163 Query 205 ACTTGT-GATCAGGGCTCAGCAGAACGAGTCAGTACCAGAAAGTAGTCGCAGGTCAGTGA 263 |||||| | |||| ||||||| | |||| | | || | | |||| |||| |||| Sbjct 164 ACTTGTCG-TCAGAGCTCAGC---A-GAGT--G-A--GGAGACTTCTCGCCGGTCCGTGA 213 Query 264 TCGGGCTCGTGGCGGCTGGTTTAGCCGGTGGTTCATTCGTTAAAGCTGTTTTCGCCGAAG 323 | ||||| || || ||||||||||| ||||| || || ||| | ||||| ||||||| | Sbjct 214 TTGGGCTTGTTGCTGCTGGTTTAGCTGGTGGCTCGTTTGTTCAGGCTGTCCTCGCCGATG 273 Query 324 CTATTCCGATCAAAGTTGGTCCTCCTCCACCTCCTTCCGGTGGCC-T--ACCTGGAACAG 380 ||||| ||||||||||||| ||||||||| ||||||||||||||| | | |||| |||| Sbjct 274 CTATTTCGATCAAAGTTGGCCCTCCTCCAGCTCCTTCCGGTGGCCTTCCAGCTGGGACAG 333 Query 381 ATAACTCAGACCAAGCAAGAGATTTTTCATTGGCATTGAAAGACAGATTTTACATACAAC 440 |||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||| | Sbjct 334 ATAACTCAGACCAAGCAAGAGACTTTGCATTGGCATTGAAAGACAGGTTTTACTTACAGC 393 Query 441 CATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGCTAAAG-AGATCATTAAC 499 ||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||| || Sbjct 394 CATTGCCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGC-AAAGGATATCATAAAT 452 Query 500 GTTAAGTCACTGATCGACAAAAAAGCTTGGCCTTACGTTCAGAACGATCTCCGTTT-AAG 558 || ||| || ||||||||| ||||||||||| || ||||| |||||||| |||| ||| Sbjct 453 GTGAAGCCATTGATCGACAGGAAAGCTTGGCCATATGTTCAAAACGATCTTCGTTCCAAG 512 Query 559 AGCATCGTACCTTCGTTACGATCTTAACACCGTTATCTCCGCTAAGCCTAAAGAAGAGAA 618 || || || |||||||| ||||||||||| | || ||| | || || || || ||||| Sbjct 513 -GCTTCTTATCTTCGTTATGATCTTAACACAATCATTTCCTCCAAACCCAAGGATGAGAA 571 Query 619 AAAGA-ACCTTAAAGAACTTACCGGCAAGCTCTTCGAAACCATCGACAA-CTTGGACTAT 676 ||| || | || || || ||| |||||||||||| ||||||||||| || ||| ||| Sbjct 572 GAAGTCAC-TCAAGGATCTCACCACCAAGCTCTTCGATACCATCGACAATCT-GGATTAT 629 Query 677 GCGGCGAGGTCTAAGAG-CAGCC-CAGATGCTGAGAAGTATTACT-CAGAAACTGTCTC- 732 ||||||| | ||||| | | ||| ||||||||||| || | | || || ||||| Sbjct 630 GCGGCGAAGAAGAAGAGTCCTTCGCAG--GCTGAGAAGTACTA-TGCTGAGACAGTCTCT 686 Query 733 GAGTTTGAAC-AATGTTCTTGCCAAGCTTGGTTAA 766 | ||||||| || ||||||||||||||||||||| Sbjct 687 GC-TTTGAACGAA-GTTCTTGCCAAGCTTGGTTAA 719 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43603239596 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5