BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490182
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05380.1 | Symbols: | P-loop containing nucleoside triphosp... 1051 0.0
AT4G05340.1 | Symbols: | P-loop containing nucleoside triphosp... 348 5e-95
> AT4G05380.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:2737146-2737983
FORWARD LENGTH=747
Length=747
Score = 1051 bits (569), Expect = 0.0
Identities = 689/747 (92%), Gaps = 7/747 (1%)
Strand=Plus/Plus
Query 1 ATGGAACCTGAGCTCAAGAACACATTGATCCGTGACCTAGACGCTTTCTCCAATGGAAAA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGCCTGAGCTCAAGAACACATTGATCCGTGACCTAGACGCTTTCTCCAATGGAAAA 60
Query 61 GACTTCTTCAAAACCGTAGGAAGAGCTTGGAAACGCGGTTATCTTCTTTACGGTCCTCCT 120
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 61 GACTTCTTCAAAACCGTGGGACGAGCTTGGAAACGCGGTTATCTTCTTTACGGTCCACCT 120
Query 121 GGAACCGGAAAAACATCGCTTGTTGCTGCCATTGCTAATCATATGAAGTATAGTATCTAT 180
|||||||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 121 GGAACCGGAAAATCATCGCTTGTTGCTGCAATTGCTAATTTTATGAACTATAGTATCTAT 180
Query 181 GATCTTCAGATTCAGAGTGTTAGAGATGATGCATTGTTTAGACAGATTCTCACTTTGACC 240
||||||||||||||||| |||| |||||||||| || ||||||||||||| || | |||
Sbjct 181 GATCTTCAGATTCAGAGCGTTAAAGATGATGCAATGCTTAGACAGATTCTTACCTCAACC 240
Query 241 GAGAACCGCTCCATTCTTCTCATCGAAGATCTTGATTGCAGTGGAGCGGATGCTTCTTGT 300
||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||
Sbjct 241 GAGAACCGCTCCATTCTTCTCATTGAAGATCTTGATTGCAGTGGAGCAGATACTACTTGT 300
Query 301 agaaacgaaaacaaagatgaaacagaatatggcgagaaacagaacaagaagaagaagaag 360
||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 301 AGAAAGGAAAATAAAGATGAAACAGAGTATGGTGAGAATCAGAACAAGAAGAAGAAGAAG 360
Query 361 aaTGATCCTAAGGTAACTTTGTCTGGTCTACTAAACTTTGTAGACGGGTTATGGTCAAGC 420
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ---GATCCTAAGGTAACTCTGTCTGGGCTACTAAACTTTGTAGACGGGTTATGGTCAAGC 417
Query 421 TGTGTAGAAGA-ACGGATCAT-AGTATTCACTACGAACCATAAGGAGAAACTCGATCCGG 478
||||||||||| | ||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 418 TGTGTAGAAGAGA-GGATCATCA-TATTCACAACGAACCATAAGGAGAAACTCGATCCGG 475
Query 479 CATTGCTGAGACCAGGAAGAATGGATGTTCACATACTCATGGATTATTGTACACCTACTG 538
||||||||||||||||||| |||||||||||||| |||||||||||||| || |||| ||
Sbjct 476 CATTGCTGAGACCAGGAAGGATGGATGTTCACATCCTCATGGATTATTGCACGCCTATTG 535
Query 539 TTTTCAAGAAACTCGCTGCATTGTACCTTGAAATCGAAGAACATGACATGTTTGAGCCTA 598
||||||||||||| ||||||||||| ||||||||||||||||| || ||||||| ||||
Sbjct 536 TTTTCAAGAAACTTGCTGCATTGTATCTTGAAATCGAAGAACACGAGTTGTTTGACCCTA 595
Query 599 TTGAGAAGATGTTACTTGAGGTGAAAACAACTCCAGCTGAGATCACAGAGCAGCTTATGG 658
||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 596 TTGAGAAGATGTTCCTTGAGGTGAAAGCAACTCCAGCTGAGATCACAGAGAAGCTTATGG 655
Query 659 TAAGCAAGAATCCAGATGTTACGCTTAAGGGTCTTGTTGAGTTTCTTGAAACTAAGAAGT 718
|||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 656 TAAGCAAGGATCCGGATGTTACGCTTAAGGGTCTTGTTGAGTTTCTTGAATCCAAGAAGA 715
Query 719 TGACTAAAGAGAGTGTTGATACTGAAA 745
|||| || |||||||||||| ||||||
Sbjct 716 TGACCAAGGAGAGTGTTGATTCTGAAA 742
> AT4G05340.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:2725690-2726065
FORWARD LENGTH=291
Length=291
Score = 348 bits (188), Expect = 5e-95
Identities = 259/292 (89%), Gaps = 9/292 (3%)
Strand=Plus/Plus
Query 296 CTTGTagaaacgaaaacaaagatgaaaca-gaatatggcgagaaacagaacaagaagaag 354
||| |||||| ||||| ||||||||| | ||| ||||||||||||||||| ||||||
Sbjct 6 CTT-TAGAAAGGAAAATAAAGATGAAGGAGGAA-ATGGCGAGAAACAGAAC---AAGAAG 60
Query 355 aagaagaaTGATCCTAAGGTAACTTTGTCTGGTCTACTAAACTTTGTAGACGGGTTATGG 414
||||||||||||||| |||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 61 AAGAAGAATGATCCTCAGGTAAGTTTGTCCGGTCTACTATACTTTGTAGACGGGTTATGG 120
Query 415 TCAAGCTGTGTAGAAGAACGGATCATAGTATTCACTACGAACCATAAGGAGAAACTCGAT 474
|||| || ||| || |||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 121 TCAAACTCTGTGGAGGAACGGATCATAATATTCACAACCAACCATAAGGAGAAACTCGAT 180
Query 475 CCGGCATTGCTGAGACCAGG-AAGAATGGATGTTCACATACTCATGGATTATTGTACACC 533
|||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 181 CCGGCATTTCTGAGACCAGGAAAG-ATGGATGTTCACATACTCATGGATTATTGTACGCC 239
Query 534 TACTGTTTTCAAGAAACTCGCTGCATTGTACCTTGAAAT-CGAAGAACATGA 584
| ||| ||||||||||||| ||| |||||||| || || ||||||||||||
Sbjct 240 TGTTGTCTTCAAGAAACTCGATGCTTTGTACCTAGATATTCGAAGAACATGA 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36168585840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5