BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490234 Length=2750 Score E Sequences producing significant alignments: (Bits) Value AT4G03260.1 | Symbols: | Outer arm dynein light chain 1 protei... 4063 0.0 > AT4G03260.1 | Symbols: | Outer arm dynein light chain 1 protein | chr4:1428171-1431663 FORWARD LENGTH=2843 Length=2843 Score = 4063 bits (2200), Expect = 0.0 Identities = 2553/2715 (94%), Gaps = 58/2715 (2%) Strand=Plus/Plus Query 73 TTTTCAAATCCCAATCATTTTCCT-CCAGGTGACCAAGTAATTGGGGAATAA-AAAAGGA 130 ||||||||| |||||| ||||||| || |||||||||||||||||||| ||| ||| ||| Sbjct 131 TTTTCAAAT-CCAATCCTTTTCCTCCCTGGTGACCAAGTAATTGGGGATTAACAAAGGGA 189 Query 131 C-AGGGCTTTATTAAGCTCGAAACAATTGTTCTTCACTCTGGCCGCTTCTGCAAAGTCGT 189 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 CTGGGGCTTTATTAAGCTCGAAACAATTGTTCTTCACTCTGGCCGCTTCTGCAAAGTCGT 249 Query 190 GTGCTTCTCGCACCTCGGCGCAGGTGTGGGGTGGCCTTGAAGTGCTGACTTCACTCTCTC 249 |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| || Sbjct 250 GTGCTTCTCGCACCTCTGCGCAGGTGTGGGGTGGCCTTGAAGTGGTGACTTCACTCTGTC 309 Query 250 TTCCAAGGATTTCTCTAGCTTCCATCATTTGGAGGCTCCGTCGTGTTTCTGAGGGTCTTA 309 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 310 TTCCAAGGATTTCTCTAGCTTCTATCATTTGGAGGCTCCGTCGTGTTTCTGAGGGTCTTA 369 Query 310 CCCTTGATTACGGCTAACATTTACTACGCCCACTATACCACCACCTCTAAAGCTTTTATA 369 |||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||| Sbjct 370 CCCTTGATTACGGCTAACATTTACTACGCCCACTATACCACCTC-T-TAA-GCTTTTATA 426 Query 370 ACAACTCTCTATTCGTGCACAAACGTAGCTTGGATCTTAgttgtttctagtttttttgtg 429 | |||| | |||||||||| |||| || ||||||||||| ||||||||||||| ||||| Sbjct 427 AGAACTTTTTATTCGTGCAAAAACTTAACTTGGATCTTAATTGTTTCTAGTTTAGTTGTG 486 Query 430 gtt-t---g----g-----ttttgct-tg-tttagtttc-ctttt---g-----gt-g-- 462 ||| | | | |||| | || ||| |||| ||||| | || | Sbjct 487 GTTGTAAAGTAAAGAACCGTTTTTTTGTGGTTTGGTTTTGCTTTTTTAGTTTCCGTTGGT 546 Query 463 -atgtagttccctgtttttaagtttgACACAATGGTCAGGTTTTCATGCTTCAACGCTCA 521 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 GATGTAGTTCGATGTTATTAAGTTTGACACAATGGTCAGGTTTTCATGCTTCAACGCTCA 606 Query 522 CATCCACCGCCATAAACCTAAGAAATCTGTTGAAGGACTTTCAGAACGAGTGATCAAAGA 581 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 607 CATCCACCGCCATAGACCTAAGAAATCTGTTGAAGGATTTTCAGAACGAGTGATCAAAGA 666 Query 582 AGATGGGTCTAAATCAAAAGGATTGAGCTCAATTATATTTGGGAGAAACATTGCTTCTGT 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 AGATGGGTCTAAATCAAAAGGATTGAGCTCAATTATATTTGGGAGAAACATTGCTTCTGT 726 Query 642 TAGTGAAAACAGCAGGCCAACTGGCTCTGCCGCTATTGAGCGGGTCTGGAAATCTGAGGA 701 |||||||||||||| |||| | | | || | | | ||||| ||||||||||||||||| Sbjct 727 TAGTGAAAACAGCAAGCCA---G-C-C-GCTG-T-T-GAGCGTGTCTGGAAATCTGAGGA 777 Query 702 AATTAAGCCCAGTGGTATTCTTGAGCATGATATTGACACGCATCAGGTACGGCATCTCAA 761 ||||||||||||||| ||||||||||||| ||||| ||||| ||||||| ||||||||| Sbjct 778 AATTAAGCCCAGTGGCATTCTTGAGCATGGTATTGGGACGCACCAGGTACTGCATCTCAA 837 Query 762 GAAAAGTCAGTCTCATGGAAATGAACTATACTTGGATGGGCGGGATGCCACAGAGAATGG 821 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 GAAAAGTCAATCTCATGGAAATGAACTATACTTGGATGGGCGGGATGCCACAGAGAATGG 897 Query 822 AACAGACGATGGATCAGATCCGATTACTTCTCCAAATTCTCTTGAACAACAGAGTGGTAC 881 ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 898 AACAGACGATGCATCAGATCGGATTACTTCTCCGAATTCTCTTGAACAACAGAGTGGTAT 957 Query 882 TCACGAGGCAGGCAGCAGCAAGCATGTAGATGGAAGTCCTAATCTGTATCAGCAAGCTCC 941 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 958 TCACGAGGCAGGCAGCAGCAAGCGTGTAGATGAAAGTCCTAATCTGTATCAGCAAGGTCC 1017 Query 942 TCGAGCTACAGTTTCTGCTTACCAGGGTTCAAATCAGGCACTCTGTGGGTCTATTTTCTC 1001 ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1018 TCGAGCTTCTGTTTCTGCTTACCAGGGTTCAAATCAAGCACTCTGTGGGTCTATTTTCTC 1077 Query 1002 GGTTGGAGATCTTCATCATACTGATAAAGACAGCCGTCAACTCGATGATACCTCCTTATA 1061 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 GGTTGGAGATCTTCATCATACTGATAAAGACAGCCGTCAACTCGATGATACCTCCTTATA 1137 Query 1062 TGGTGAACAGATGGACAACTCAAACAGCCAAACACCTCATGATTCACCTTTGATGGTGAG 1121 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1138 TGGTGAACAGATGGACAACTCAAACAGTCAAACACCTCATGATTCACCTTTGATGGTGAG 1197 Query 1122 GTCGAATTCAATGCCTAATATTGCTGACTCTTCATCAGAGAAGTCTTCACCTTTCAAATA 1181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 GTCGAATTCATTGCCTAATATTGCTGACTCTTCATCAGAGAAGTCTTCACCTTTCAAATA 1257 Query 1182 TTCTTCTCACCACTCTAGATCCTCTGATGACCTTCGTGCTCTCTACA-TGCGCCAAACAG 1240 ||||||||||||||||||||||||||||||||||| ||| ||| ||| | |||||||||| Sbjct 1258 TTCTTCTCACCACTCTAGATCCTCTGATGACCTTCATGCCCTCGACACT-CGCCAAACAG 1316 Query 1241 ATAAATCTGTCCATGAGACTGATGAAGAGGTGAAGCAAGAGCAAGATCAAGATCGGGACT 1300 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1317 ATAAATCTGTCCATGAGACTGATGAAGAGGTGAAGCAAGAGGAAGATCAAGATCGGGACT 1376 Query 1301 ATGATACGCATAATTCTGGAGATAACAACCAGGAAAATCTCGTGGAGGATGGATATGATG 1360 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1377 ATGATATGCATAATTCTGGAGATAACAACAAGGAAAATCTCGTGGAGGATGGATATGATG 1436 Query 1361 ATGCATATGATTATTCTTCTTTGGCAAAAGATTGGATCGTACCACCAACAGATGAGTTTA 1420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1437 ATTCATATGATTATTCTTCTTTGGCAAAAGATTGGATCGTACCACCAACAGATGAGCTTA 1496 Query 1421 AATTAACAAAGTTCCTTGAAGGAGAAACATCAAACCAGCAAGCAGAATTTCCGGGAAAGG 1480 ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1497 AATTATCAAAGTTCCTTGAAGGAGAAACAACAAACCAGCAAGCAGAATTTTCGGGAAAGG 1556 Query 1481 ATTCTAAATTCAAGCGTATCGAGGATTGGGTCAATGACCTTCAGCATGTAAACTTGTCTG 1540 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1557 ATTCTAAATTCAAGCGTATCGAAGATTGGGTCAATGACCTTCAGCATGTAAACTTGTCTG 1616 Query 1541 AGGAAGCTGATGAAATAACAGGGTACGACGATGAGTTGCCAAGAGAACCTGTCATGTTGA 1600 |||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 1617 AGGAAGCTGATGAAATAACAGGGTACGATGATGAGTTGCCAAGAGAACCCGTCGTGTTGA 1676 Query 1601 ATGAGCCAGTAACAGCTTCTGCTAAAGTGGATGCCATCAAGTTAACTCCTGGAATGGAAG 1660 |||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1677 ATGAGCAAGCAACATCTTCTGCTAAAGTAGATGCCATCAAGTTAACTCCTGGAATGGAAG 1736 Query 1661 CTGCGAAAAAGTATATATCCTCTCTAAGTGCTTCTGCAACCACAGCCCAACTGGTTAGTC 1720 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1737 CTGCGAAAAAGTATATATCCTCTCTAAGTGCTTCTGCAACCACAGCCCAGCTGGTTAGTC 1796 Query 1721 ATGGTCTGGTTGTGATACCATTCCTCAGTGCATTTGTTGGTCTGAGAGTTCTCAATCTCT 1780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1797 ATGGTCTGGTTGTGATACCATTCCTCAGTGCATTTGTTGGTCTGAGAGTTCTCAATCTCT 1856 Query 1781 CAGGAAATGCTATAGTTAGAATAACCGCTGGTGCTCTTCCTCGAGGACTACATGCATTGA 1840 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1857 CAGGAAATGCTATAGTTAGAATAACCGCTGGTGCTCTTCCTCGAGGTTTACATGCATTGA 1916 Query 1841 ATTTGTCGAAGAACAGCATCTCGGTGATTGAGGGCCTACGTGAACTCACTCGGCTTCGAG 1900 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1917 ATTTGTCGAAGAACAGTATCTCGGTGATTGAGGGCCTACGTGAACTCACTCGGCTTCGAG 1976 Query 1901 TTTTAGATTTGAGTTACAACCGAATACTTAGACTTGGTCATGGTCTGGCATCTTGCTCCT 1960 | |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 1977 TATTAGATTTGAGTTACAACCGAATACTGAGACTTGGTCATGGTCTGGCTTCGTGCTCCT 2036 Query 1961 CTCTGAAAGAACTATACCTAGCTGGGAACAAAATCAGCGAAATCGAGGGTCTTCATCGTC 2020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2037 CTCTGAAAGAACTATACCTAGCTGGGAACAAAATCAGCGAAATCGAGGGTCTTCATCGAC 2096 Query 2021 TCTTGAAATTGACGGTCTTGGATTTACGCTTCAATAAGTTTTCAACCACCAAATGTCTTG 2080 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2097 TTTTGAAATTGACGGTCCTGGATTTACGCTTCAATAAGTTTTCAACCACCAAATGTCTTG 2156 Query 2081 GCCAGCTCGCTGCAAATTACAGTTCTCTTCAGGCTATAAGCTTGGAAGGTAACCCTGCAC 2140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2157 GCCAGCTCGCTGCAAATTACAGTTCTCTTCAGGCTATAAGCTTGGAAGGTAACCCTGCAC 2216 Query 2141 AGAAGAATGTTGGTGATGAACAACTGAGAAAGTACCTTTTGGGACTTCTTCCAAATTTGG 2200 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2217 AGAAGAATGTTGGTGATGAACAACTGAGAAAGTACCTTTTGGGACTTCTGCCAAATTTGG 2276 Query 2201 TATACTATAATAGACAAGGCACTAAAGATGCTCGGCTCGG-AGCAAGCACACATCAGTTG 2259 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 2277 TATACTATAATAGACAAGGCACTAAAGATGCTCGGCTCGGGA-CAAGCACACATCAGTTG 2335 Query 2260 GACCGAGGCCTTAGATCAGAGCTCAAAAACAGTTGCTGGAAGAGTAGCCATGGTGCATCC 2319 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 2336 GACCGAGGCCTTAGATCAGAGCTCAAAAACAGTAGCCGGAAGAGTAGCCATGGTGCATCC 2395 Query 2320 AGTTCTCACAAACCCGGATCCTCCGCAGCTCGTAAAGCACCAGCTTTGCAGAAACGGTCT 2379 |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 2396 AGTTCTCACAAACCTGGATCCTCCACAGCTCGTAAAGCACCAGCATTGCAGAAACGGTCC 2455 Query 2380 AAGGAGAGAAGCAGCCGTCTTCCACCTGTGGGACACAAAATATCTACAGCTGCTGACGAG 2439 ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct 2456 AAGGAGAGACGCAGCCGTCTTCCACCTGTGGGACACAAACTATCTCCAGCTGCTTACGAG 2515 Query 2440 AATTATCACGTTGCTACTGCTGATAGATTGTCTAGTCTGAGATCTGAGCTCTCTATGCGT 2499 ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 2516 AATTATCACGTTGCTACTGGTGATAGATTGTCTAGTCTGAGAACTGAGCTCTCCATGCGA 2575 Query 2500 ATAAGTCGAAGTGAAGGAACTCTCGGACCTATCTGATCTCTCTCTC-CC-T-TT-CATTG 2555 | |||||||||||||||||||||||||||||||||||||||||||| || | || ||||| Sbjct 2576 AGAAGTCGAAGTGAAGGAACTCTCGGACCTATCTGATCTCTCTCTCTCCCTCTTTCATTG 2635 Query 2556 GCTGTGATTTCCTTTGCGAGGTAACGATGAAGATGTGATAGATATATATACTTTCTTCCC 2615 ||| ||||||||| ||||||||||||||||||||||||||||| | | |||||||||| Sbjct 2636 CCTGCGATTTCCTTAGCGAGGTAACGATGAAGATGTGATAGATACACA--CTTTCTTCCC 2693 Query 2616 TTTATTCATCTTCTTCATCTTTGTGTTTTTGTTGTTGTGCATTACCATTTACATCAGAAG 2675 ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| Sbjct 2694 TTTATTCATCTTCTTCATCTTTGTGTTTT-GTTGTTGTGCATTAC-AT--ACATCAGAAG 2749 Query 2676 CTTTGATTCTTTTAGCTTCTCAATAATGTCTGAAATTTGAAACCATGATATACATTCTTT 2735 ||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 2750 CTTTGATTCTTATAGCTTCTCAATAATGTCTGAAATTGGAAACCATGGTATACATTCTTT 2809 Query 2736 TCAGCACAGTCTGAG 2750 ||||||||||||||| Sbjct 2810 TCAGCACAGTCTGAG 2824 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 136604585789 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5