BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490272
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02880.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2663 0.0
> AT4G02880.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03290.2).
| chr4:1274465-1278718 FORWARD LENGTH=2702
Length=2702
Score = 2663 bits (1442), Expect = 0.0
Identities = 1841/2025 (91%), Gaps = 62/2025 (3%)
Strand=Plus/Plus
Query 1 TGTTTCTCACAATTCTC-AAAATCTCTCATCCGAATTGCTGCGCCTTTTCCGCTTCC-TT 58
||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| ||
Sbjct 58 TGTTTCTCACAATTCTCAAAAATCTCTCATCCGAA-T--TGCGCCTTTTCCGCTTCCTTT 114
Query 59 TACTCTGTCAAATCTCTC-ACCGGAAAAATCTCGGAAAGGTTCGTGTGATCCAATTCTG- 116
| |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||
Sbjct 115 TGCTCTGTCAAATCTCTCAACCGGAAAAATCTCGGGAAGGTTCGTCTGATCCAATTCTGA 174
Query 117 AGAATTTGAAAAACCCACCGAGAAATTCGAGATTTAGTTGATTTTTTCACTGATGGGTTA 176
||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 175 AGATTTTGAAAAACCCACCGAGAACTTCGAGATTTAATTGAATTTTTCACTGATGGGTTA 234
Query 177 CAAAGCGGTTTATCGATCTCTCACTGAATTGTTTCCTCAGATTGATGCAAGGCTTTTAAA 236
|||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 235 CAAAGCAGTTTACCGATCTCTCACGGAATTGTTTCCACAGATTGATGCAAGGCTTTTAAA 294
Query 237 AGCTGTTGCTATTGAGCACCCAAAGGATGCTAATGAAGCTGCAGCTGTAGTTGTTTCAGA 296
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 295 AGCTGTTGCTATTGAGCACCCAAAGGATGTTAATGAAGCTGCAGCTGTAGTTGTTTCAGA 354
Query 297 GATTGTTCCTTTCTTTTACCCTAATTTGGCTGATAATTCTACACAACCTGAGAACAGGTC 356
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |
Sbjct 355 GATTGTTCCTTTCTTTTACCCTAATTTGGCTGATAGTTCTACTCAACCTGAGAACAAGAC 414
Query 357 ACCCGGAAATGTGCCT-----A----ACAA---AGTAGAACGTGCTATGCAAAACGGTGT 404
|||||||||||||||| | | || ||||||||||| ||||| | | ||||
Sbjct 415 ACCCGGAAATGTGCCTACCGAAGTTGAAAATGCAGTAGAACGTGATATGCCATTCAGTGT 474
Query 405 GTTGTCTGGTTCAGAGACAGGTTCTTCTTCCTCTTCAGGAAGTAT-CC-CTCTGGCTGTT 462
||||||||||||||||| || | ||| | |||||| | | | || || ||||| ||
Sbjct 475 GTTGTCTGGTTCAGAGA-TGG--GTGGTTCATATTCAGG-A-TCTGCCTCTATGGCTTTT 529
Query 463 GATTGTGATCATGAAACAAGGGCCCCAATTACTGAATCAATTTCT-AGTAGGAACCAGTT 521
|| | |||||||||||||||||||| |||||||||| ||||| || ||||| |||||
Sbjct 530 GA--AT-ATCATGAAACAAGGGCCCCAGTTACTGAATCGGTTTCTAAG-AGGAATCAGTT 585
Query 522 GACACATGTTATGCCAAATGTTGATCTTGATATTCAGAGCAACGCAAAGATCGGGTTGAG 581
||||||||||||||||||||||| | ||||||||||||| || | ||||||||||||||
Sbjct 586 GACACATGTTATGCCAAATGTTGTTGTTGATATTCAGAGAAAAGGTAAGATCGGGTTGAG 645
Query 582 CGGATCGGAAGAGTCTGGAGTGGTTTCCTCAGAAAACCCC-GTCTCTTTTCAGGCGGGAG 640
||||||||| |||||||||||||||||||||| || |||| ||||| | |||||| ||||
Sbjct 646 CGGATCGGATGAGTCTGGAGTGGTTTCCTCAG-AACCCCCTGTCTCCTGTCAGGCAGGAG 704
Query 641 CTAAATCGACTAGCCATGGTTGTCAAGGTGTTGGGTTTCACATTACAGGTAGTAATCTAG 700
| ||||||||| || ||| ||| |||||||||| |||||||| |||| | |||||| ||
Sbjct 705 CCAAATCGACTGGCGATGATTGGCAAGGTGTTGAGTTTCACAGTACA-G--GTAATCAAG 761
Query 701 CAGAAGCTAGCACAAGCTCAGAGTCAGAAGATGCTGTGCATAAGCTGGTTTATCCTGCAG 760
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 762 CAGAAGCTAGCACAAGCGCAGATTCAGAAGATGCTGTGCATAAGCTGGTTTATCCTGCAG 821
Query 761 ACAATTCGGCAATGACACAGAAATCACCTCCTCTTCAAATTAGATTTGGGAGTATCGATA 820
|||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 822 ACAATTTGGCAATTACACAGAACTCACATCCTCTTCAAATTAGATTTGGGAGTATCGATG 881
Query 821 TTGTGAACGAGACATCAAGTGGTTCATTGGCTGTTGAAAATAGCGATGCAGAGTTGAGTG 880
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 882 TTGTGAACGAGACATCAAGTGGTTCGTTGGCTGTTGAAAATAGTGATGCCGAGTTGAGTG 941
Query 881 GTTCAAATCTTGTGGATGTGACATCAAAGGGCTCTTTGGCAGTTGAAAATGGTGATCCAG 940
|||||||||||||||||| || |||||||||||||||||| | |||||||||||||||||
Sbjct 942 GTTCAAATCTTGTGGATGAGATATCAAAGGGCTCTTTGGCCGATGAAAATGGTGATCCAG 1001
Query 941 AGCTGGTTGGTGCTTTTAGCTCTGTTGTTAGCAGATCAACCCAGGGATGCAACATTGTCC 1000
|||||| ||||||| |||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 1002 AGCTGGATGGTGCTGTTAGCTCTGTTGGTAACAGATCAACCCAGGGATGCAACATGGTCC 1061
Query 1001 ACCTTGAACAGATCATTGAAGATGCCAAAAGTAACAAGAAAACCTTGTTCACTGTGATGG 1060
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1062 ACCTTGAACAGATCATTGAAGATGCCAAAAGTAACAAGAGAACCTTGTTCACTGTGATGG 1121
Query 1061 AGTCGATTATGAATCTGATGAGAGAAGTTGAACTTCAAGAAAAGGATGCAGAAAAGGCAA 1120
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1122 AGTCGATTATGAATCTGATGAGAGAAGTTGAACTTCAAGAGAAGGAGGCAGAAAAGGCAA 1181
Query 1121 AGGAAGATGCTTCTAGAGGAGGCTTTGATACTCTTGACAAGGTGGAGGAGCTGAAGAAGA 1180
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 AGGAAGATGCTAGTATAGGAGGCTTTGATACTCTTGACAAGGTGGAGGAGCTGAAGAAGA 1241
Query 1181 TGCTGGAACATGCGAAGGAGGCAAATGACATGGATGCTGGAGAAGTTTATGGGGAGAGGT 1240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1242 TGCTGGAACATGCGAAGGAGGCAAATGACATGGCTGCTGGAGAAGTTTATGGGGAGAGGT 1301
Query 1241 CAATTTTGACCACTGAAGTTAACGAGCTTGAAAATCGCTTGCTCAACTTATCAGAGGAAC 1300
|||||||||||||||||||||| |||||||||||||||||| ||| ||||||||| ||||
Sbjct 1302 CAATTTTGACCACTGAAGTTAATGAGCTTGAAAATCGCTTGATCAGCTTATCAGAAGAAC 1361
Query 1301 GAGACAAATCTCTTTCTGTTCTTGATGAGATGCGTGAAGTTCTTGAAATAAGACTAGCGG 1360
||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1362 GAGACAACTCTCTCTCTGTTCTTGATGAGATGCGTGTAGATCTTGAAATAAGACTAGCGA 1421
Query 1361 CAGCGCTGGAGATAAAAAATGCTGCTGAGCAAGAAAAGCAGGAAAAAGAAGGGTCTGCAC 1420
|||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1422 CAGCTTTGGGGATAAAAAATGCTGCTGAGCAAGAAAAACAGGAAAAAGAAGGGTCTGCAC 1481
Query 1421 GCAAGGCATTTGCTGAACAAGAAGCGATCATGGAAAAAGTTGTCCAAGAATCAAAGCTTC 1480
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 1482 GCAAGGCATTTGCTGAACAAGAAGCGATCATGGAGAGAGTTGTCCAAGAATCCAAGCTTC 1541
Query 1481 TACAGCAAGAGGCAGAAGAAAACTCCAAGCTGCGAGAGTTTCTTATGGATCATGGTCGGA 1540
||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1542 TACAGCAGGAGGCAGAGGAAAACTCCAAGCTGCGAGAGTTCCTTATGGATCATGGTCGAA 1601
Query 1541 TTGTTGATTCCTTACAAGGAGAAATCTCTGTGATCTGTCAAGACATCCGACACTTGAAAG 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 TTGTTGATTCCTTACAAGGAGAAATCTCTGTGATCTGTCAAGACATCCGACACTTGAAAG 1661
Query 1601 AGAAATTCGACAACCGAGTGCCATTGAGCCAATCAAT-TACCTCAAGCCAGACTAGCTGT 1659
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1662 AGAAATTCGACAACCGAGTGCCATTGAGCCAATCAATCT-CCTCAAGCCAGACTAGCTGT 1720
Query 1660 AAACTGGCTTCTTCCGCATCATCCATGAAGAGCTTATTG-CTGGAGAAGCCTTTGGAGGC 1718
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 1721 AAACTGGCTTCTTCCGCCTCATCCATGAAGAGCTTATTGAC-GGAGAAGCCTTTGGAAGC 1779
Query 1719 ATCTTATGAAACAGCTGAAGCCTCGAGCAACAACACGAGCCCAAAAGCTT-TGGTTAACG 1777
||||||||||||| |||||||||||||||| |||| |||||||||||||| || |||| |
Sbjct 1780 ATCTTATGAAACACCTGAAGCCTCGAGCAATAACAAGAGCCCAAAAGCTTCTG-TTAATG 1838
Query 1778 AGGGAAAAGATGATCGTAAGGAGCTTCTGGAAGAGGGCTGGGACTTTTTTGACAAAGAGA 1837
| | ||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1839 A---A---------CGTAAGGAGCTTCTGGATGACGGCTGGGACTTCTTTGACAAAGAGA 1886
Query 1838 CAGAGCTCTAAGTGTCTTCATTACAGAAGATTTCATCAGTTTTAAGAATAAAAGAGATAT 1897
||||||||||||||||||| || ||| ||||| ||| || || |||||||||||||||
Sbjct 1887 CAGAGCTCTAAGTGTCTTCTTTTCAGTAGATT--ATCGGTGCTA-GAATAAAAGAGATAT 1943
Query 1898 GAAGGGCTTTTGGGT-CGTGCTCTATATAGAGTAAAGCTTGGATCTTTGAGCTAATCTAC 1956
|||||| || ||||| | |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1944 GAAGGGATTCTGGGTTC-TGCTCTATGTAGAGTAAAGCTTGGATCTTTGATCTAATCTAC 2002
Query 1957 CATTAGTGTAAA-CATCTATTGAGCTCT-TTATTATTTTTCTTCT 1999
| ||||| |||| ||||||||||||||| || |||||||||||||
Sbjct 2003 CGTTAGTATAAAACATCTATTGAGCTCTCTT-TTATTTTTCTTCT 2046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99045675285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5