BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490274 Length=613 Score E Sequences producing significant alignments: (Bits) Value AT4G02840.2 | Symbols: | Small nuclear ribonucleoprotein famil... 725 0.0 > AT4G02840.2 | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:1264627-1266459 FORWARD LENGTH=686 Length=686 Score = 725 bits (392), Expect = 0.0 Identities = 554/623 (89%), Gaps = 48/623 (8%) Strand=Plus/Plus Query 1 CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAA---- 56 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14 CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAATTTT 73 Query 57 ---------TT-TTC-TTCTCTCACCATGAAGCTCGTTAGGTTTTTGATGAAATTGAACA 105 || ||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 74 CTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGGTTTTTGATGAAATTGAACA 133 Query 106 ACGAAACAGTTTCAATTGAGCTCAAGAACGGAACCATTGTTCATGGAACCATTAC--A-G 162 |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | | Sbjct 134 ACGAAACAGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGATG 193 Query 163 -GTG---TAGATGTTA---G--T--A--TG-A-AC---A-C-T---CA-T--TT-AAAAG 195 || ||||| ||| | | | || | | | | | || | || ||||| Sbjct 194 AGTACACTAGATTTTACTTGAATCGAGGTGTAGATGTTAGCATGAACACTCATTTAAAAG 253 Query 196 CTGTGAAACTCACTTTGAAAGGGAAGAATCCAGTTACATTAGACCACCTAAGTGTCAGGG 255 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 254 CTGTGAAACTCACTCTGAAAGGGAAGAATCCAGTTACATTAGACCACTTAAGTGTCAGGG 313 Query 256 GAAACAACATTCGCTATTATATTCTTCCAGACAGTTTGAATCTCGAGACTTTGCTGGTTG 315 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 314 GAAACAACATTCGCTATTATATTCTTCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTG 373 Query 316 AAGACACTCCAAGAATCAAGCCCAAAAAGCCAACTGCAGGTAAGATTCCACCAGGTCGTG 375 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 374 AAGACACTCCAAGAATCAAACCCAAAAAGCCAACTGCAGGTAAGATTCCAGCAGGTCGGG 433 Query 376 GACGTGGTCGTGGAAGAGGTCGTGGACGTGGACGTGGTGGTCGCTAAGCATTTTGCAGTG 435 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 434 GACGTGGTCGTGGAAGAGGTCGTGGACGTGGCCGTGGTGGTCGTTAAGCATTTTGCAGTA 493 Query 436 ATCAAAAG-CTTGGTCCTTTTTGTTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA 494 |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 494 ATCAAAAGTCT-GGTCCTTTTTGGTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA 552 Query 495 GTGAGATTTGGTGTCACGAAGACAAATCCTTGTTATCTCTT-AAGTTTTCATGATTTTGA 553 ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| ||||| Sbjct 553 GTGAGATTTGGTGTCACTAAGACAAATTCTTGTTATCTCTTTAAGTTTTCATGAATTTGA 612 Query 554 GATTTGATACGTTATTGCCAAAC 576 ||||||| ||||||||||||||| Sbjct 613 GATTTGAAACGTTATTGCCAAAC 635 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29537678436 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5