BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490274

Length=613
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02840.2 | Symbols:  | Small nuclear ribonucleoprotein famil...   725    0.0  


> AT4G02840.2 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr4:1264627-1266459 FORWARD LENGTH=686
Length=686

 Score =  725 bits (392),  Expect = 0.0
 Identities = 554/623 (89%), Gaps = 48/623 (8%)
 Strand=Plus/Plus

Query  1    CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAA----  56
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct  14   CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAATTTT  73

Query  57   ---------TT-TTC-TTCTCTCACCATGAAGCTCGTTAGGTTTTTGATGAAATTGAACA  105
                     || ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  74   CTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGGTTTTTGATGAAATTGAACA  133

Query  106  ACGAAACAGTTTCAATTGAGCTCAAGAACGGAACCATTGTTCATGGAACCATTAC--A-G  162
            |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  | |
Sbjct  134  ACGAAACAGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGATG  193

Query  163  -GTG---TAGATGTTA---G--T--A--TG-A-AC---A-C-T---CA-T--TT-AAAAG  195
             ||    ||||| |||   |  |  |  || | |    | | |   || |  || |||||
Sbjct  194  AGTACACTAGATTTTACTTGAATCGAGGTGTAGATGTTAGCATGAACACTCATTTAAAAG  253

Query  196  CTGTGAAACTCACTTTGAAAGGGAAGAATCCAGTTACATTAGACCACCTAAGTGTCAGGG  255
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  254  CTGTGAAACTCACTCTGAAAGGGAAGAATCCAGTTACATTAGACCACTTAAGTGTCAGGG  313

Query  256  GAAACAACATTCGCTATTATATTCTTCCAGACAGTTTGAATCTCGAGACTTTGCTGGTTG  315
            |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  314  GAAACAACATTCGCTATTATATTCTTCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTG  373

Query  316  AAGACACTCCAAGAATCAAGCCCAAAAAGCCAACTGCAGGTAAGATTCCACCAGGTCGTG  375
            ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct  374  AAGACACTCCAAGAATCAAACCCAAAAAGCCAACTGCAGGTAAGATTCCAGCAGGTCGGG  433

Query  376  GACGTGGTCGTGGAAGAGGTCGTGGACGTGGACGTGGTGGTCGCTAAGCATTTTGCAGTG  435
            ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| 
Sbjct  434  GACGTGGTCGTGGAAGAGGTCGTGGACGTGGCCGTGGTGGTCGTTAAGCATTTTGCAGTA  493

Query  436  ATCAAAAG-CTTGGTCCTTTTTGTTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA  494
            |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  494  ATCAAAAGTCT-GGTCCTTTTTGGTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA  552

Query  495  GTGAGATTTGGTGTCACGAAGACAAATCCTTGTTATCTCTT-AAGTTTTCATGATTTTGA  553
            ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||
Sbjct  553  GTGAGATTTGGTGTCACTAAGACAAATTCTTGTTATCTCTTTAAGTTTTCATGAATTTGA  612

Query  554  GATTTGATACGTTATTGCCAAAC  576
            ||||||| |||||||||||||||
Sbjct  613  GATTTGAAACGTTATTGCCAAAC  635



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29537678436


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5