BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490280 Length=765 Score E Sequences producing significant alignments: (Bits) Value AT4G02770.1 | Symbols: PSAD-1 | photosystem I subunit D-1 | chr... 1131 0.0 > AT4G02770.1 | Symbols: PSAD-1 | photosystem I subunit D-1 | chr4:1229111-1229945 REVERSE LENGTH=835 Length=835 Score = 1131 bits (612), Expect = 0.0 Identities = 675/704 (96%), Gaps = 9/704 (1%) Strand=Plus/Plus Query 1 ATCTCTTTTCTCTTCTCATCAAAACATACC-ATCAAGCAATTTGCTCATTAGAGAACAAA 59 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | Sbjct 1 ATCTCTTTTCTCTTCTCATCAAAACATACCAAT-AAGCAATTTGCTCATTAGAGAACAGA 59 Query 60 GAAAGaaaaaaaCAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGCCATAACAACCG 119 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GAAA-AAAAAAACAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGCCATAACAACCG 118 Query 120 CCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCGTCCGAAATCCC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 119 CCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCGTCCCAAATCCC 178 Query 180 TCTCCTTCACCAAAACCTCAATCCGCGCCGAGAAAACAGATTCCAAAGCCGC---TGC-- 234 ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| Sbjct 179 TCTCCTTCACCAAAACCGCAATCCGCGCCGAGAAAACAGATTCCTCCGCCGCCGCTGCTG 238 Query 235 -AGCCCCCGCCGTGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCTAGACCCAAACA 293 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 CAGCCCCCGCCACGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCTAGACCCAAACA 298 Query 294 CACCGTCTCCGATCTTCGCGGGAAGCACCGGTGGTCTTCTACGTAAAGCACAAGTGGAAG 353 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 299 CACCGTCTCCGATCTTCGCTGGAAGCACCGGTGGTCTTCTACGTAAAGCGCAAGTGGAAG 358 Query 354 AGTTCTACGTTATTACATGGAACTCACCAAAAGAACAGATCTTTGAGATGCCGACAGGAG 413 ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 359 AGTTCTACGTTATCACGTGGAACTCACCGAAAGAACAGATCTTTGAGATGCCGACAGGAG 418 Query 414 GTGCAGCGATCATGAGAGAAGGTCCGAATCTGCTGAAGCTAGCGAGGAAAGAACAGTGTT 473 | ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 419 GAGCAGCGATCATGAGAGAAGGTCCGAATCTTCTGAAGCTAGCGAGGAAAGAGCAGTGTT 478 Query 474 TAGCTTTGGGGACAAGGCTTAGATCCAAGTACAAGATTACCTACCAGTTTTACAGAGTGT 533 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 479 TAGCTTTGGGGACAAGGCTTAGATCCAAGTACAAGATCACTTACCAGTTTTACAGAGTGT 538 Query 534 TTCCTAATGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTATCCAGAGAAGGCGA 593 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTCCTAACGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTATCCAGAGAAGGCGA 598 Query 594 ATCCAGGAAGAGAAGGTGTTGGTCTGAACATGAGATCTATTGGGAAAAATGTTAGTCCCA 653 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 599 ATCCAGGAAGAGAAGGTGTTGGTCTCAACATGAGATCTATTGGGAAAAATGTTAGTCCCA 658 Query 654 TTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAGAT 697 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAGAT 702 Score = 82.4 bits (44), Expect = 6e-15 Identities = 59/65 (91%), Gaps = 6/65 (9%) Strand=Plus/Plus Query 698 AAAACTATGTGCA--T-GTGATG---ATGACTATGTTTCATGTTAATTTTTAATGGATTT 751 ||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| Sbjct 722 AAAACTATGTGCATGTGGTGATGATTATGACTATGTTTCATGTTAATTTTTAATGGATTT 781 Query 752 TGTTT 756 ||||| Sbjct 782 TGTTT 786 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37173268780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5