BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490282
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02740.1 | Symbols: | F-box/RNI-like superfamily protein | ... 2194 0.0
AT4G02760.3 | Symbols: | RNI-like superfamily protein | chr4:1... 353 2e-96
> AT4G02740.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:1217591-1220857 REVERSE LENGTH=1628
Length=1628
Score = 2194 bits (1188), Expect = 0.0
Identities = 1462/1590 (92%), Gaps = 36/1590 (2%)
Strand=Plus/Plus
Query 14 ATCCTCCCACACAAAGCCCTAACTCGGTCCGTACTCTTCCCGGCTCGAACCATAGCCACA 73
|||||||||| ||||||| |||||||||||||||| |||| |||||||| ||||||||||
Sbjct 28 ATCCTCCCACCCAAAGCCATAACTCGGTCCGTACTGTTCCAGGCTCGAATCATAGCCACA 87
Query 74 CCGATTTGATTATCTCATCGCTCATTTCGTTTTCAGATTCTTCTACGATCTCCATTAGCT 133
|||||||||||||||||||| || |||||||| ||||||| ||| ||||||||||||||
Sbjct 88 CCGATTTGATTATCTCATCGTTCCTTTCGTTTCCAGATTCCTCTCCGATCTCCATTAGCA 147
Query 134 GTTCCTTCGATCGAGTCCTTGATAGAGCTCTCGCCTCCGCTTCCGCTGATGAATCCGTTC 193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 ATTCCTTCGATCGAGTCCTTGATAGAGCTCTCGCCTCCGCTTCCGCTGATGAATCCGTTC 207
Query 194 AGGATCGTCTCGTCGATCGTACTCTCGAACTCGCATCGCTTCTTCTCGATTCCACGAAAC 253
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 208 AGGATCGTCTCGTCGATCGTACTCTCGAACTCGCGTCGCTTCTTCTCGATTCCACTAGGC 267
Query 254 GATGCTTCCGGAAACGAGCTTCTGTTCACAATTCCAATTCCTGGTTCCTTCCTCCAGAAC 313
| |||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 268 GTTGCTTCCGTAAGCGAGCTTCTGTTCACAATTCCAATTCCTGGTCCCTCCCTCCAGAAC 327
Query 314 TTACCATTAAGGTATTTTCGATGCTTGATACAAAGTCTCTGATGCAAGCAGCTGTGTGCT 373
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 328 TTACCATTAAGGTCTTTTCGATGCTTGATACAAAGTCTATGATGCAAGCAGCTGTGTGCT 387
Query 374 GCACCATGTTCAACAAATGTGCTATGGACCGTTTATGTTACTCCCACATCGACTTGACAA 433
||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 388 GCACCATGTTCAATAAATGTGCAATGGACCGTTTATGTTACTCCCACATCGACCTGACAA 447
Query 434 CCTCTGCTAGATATGCTGATAAAGGAGTTGTGTCTACTATGATCAATCGGGCTGGAAAAG 493
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 448 CGTCTGCTAGATATGCTGATAAAGGAGTTGTGTCTACTATGATCAATCGGGCTGGTAAAG 507
Query 494 AACTCAGATCCCTCAAACTTGGTCGTGTTGTTCGTACAGCTGGATCTGATTCTACTGCAC 553
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 508 AACTCAGATCCCTGAAACTTGGTCGTGTTGTTCGTACAGCTGGATCTGATTCTGCTGCAC 567
Query 554 CTTTGCTTAGCGGATCTTGTCTTTCCCCACTAGCATATAATCATGGCTTTCTTGGGAGTC 613
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 568 CTTTGCTTAGCGGATCTTGTCTTTCCCCACTAGCATATAATCATGGTTTTCTTGGGAGTC 627
Query 614 GCTTGAGAAGCCTGCGGCTTTACAATCTCAGACCTATGAAATACAGGTCCTTATGCGATG 673
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 628 GCTTGAGAAGCCTACGGCTTTACAATCTCAGACCTATAAAATACAGGTCCTTATGCGATG 687
Query 674 CGTTGTCAGTTTGTCCAAATATCACTGATTTGAGGATTGTTGGATTGTATAACCTAACTG 733
||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |
Sbjct 688 CGTTGTCAGTTTGTCCAAATATCACTGATCTGAGGATTGTGGGATTGTATAACTTAACCG 747
Query 734 AGGAGCTATTTAATTCATTGACaaaaaaaTGCCGCTTAATAGAGAACCTGTTCTTAGAGA 793
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 748 AGGAGCTATTTAATTCATTGACAAAAAAATGCCGCTTAATAGAGCACCTGTTCTTAGAGA 807
Query 794 CCTACGGTTATCCACGTACGTTAGAGACTAAAACAGGATCATCATTAGTGGAGTTTGTGA 853
||||||||||||||||||||||||||| |||| |||||||||| ||||| ||||||||||
Sbjct 808 CCTACGGTTATCCACGTACGTTAGAGAGTAAAGCAGGATCATCCTTAGTAGAGTTTGTGA 867
Query 854 CCAATTGCCCCAACTTAACGTCCCTAACGCTCATACGCTTTGGACTAACCGATGACTGGG 913
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 868 CCAATTGCCCCAACTTAACGTCCCTGACGCTCATACGTTTTGGACTAACCGATGACTGGG 927
Query 914 CCCGAAATCTTGCTGAGAGTTGTCGTAAAGTGAAGTACCTGAATTTGTCCAGATCACCTA 973
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 928 CCCGAAATCTTGCTGAGAGTTGTCGTAAACTGAAGTACCTGAATTTGTCCCGATCACCTA 987
Query 974 CAATCAAGGGTCGTTTTTTGAGGGAGGTGGGACCTAGCTGCAGAGAAAGTCTACTCAAGA 1033
|||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||
Sbjct 988 CAATCAAGGGTCGTTTTTTGAGGGAGTTGGGACTTAGCTGCAAAGAAAATCTACTCAAGA 1047
Query 1034 CTCTAATAATGCGCAACTGCCCTAAACTACAGGAGAAAGAAATGTTGGAATTCTGTAACT 1093
|||||||| |||||| |||||| |||||||||||||||||| | ||||||||||||||||
Sbjct 1048 CTCTAATATTGCGCAGCTGCCCAAAACTACAGGAGAAAGAAGTATTGGAATTCTGTAACT 1107
Query 1094 CACTACTCACAGGGAGCTTCAAATCCATTAGGCACATTGATGTTTCAAGTAACCGCGGCT 1153
||||||||||||||| ||||||||||||| |||| |||||||||||||||||| | || |
Sbjct 1108 CACTACTCACAGGGAACTTCAAATCCATTCGGCAAATTGATGTTTCAAGTAACAGTGGAT 1167
Query 1154 TAGCATCTTCAGACAGGGGCAAGAGATGTAACAAACCAAACTTTCCTCTGGAGAGGCTGA 1213
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 TAGCTTCTTCAGACAGGGGCAAGAGATGTAACAAACCAAACTTTCCTCTGGAGAGGCTGA 1227
Query 1214 AAGAAGAAAGATCAGATGTCACATTTGTGGCGGACTTTCCTCCATTGCCTAGTTCCGAAA 1273
|||||||||||||||||||||||||||||||||| ||| ||||| | ||||| | ||
Sbjct 1228 AAGAAGAAAGATCAGATGTCACATTTGTGGCGGA-TTT--TCCATCAACAAGTTCAGGAA 1284
Query 1274 AGCCTTATGGTGTCTGCGATGAAGAAGAGTTGAGGCTGATAGAGATGATGGAAGCTGAGG 1333
||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1285 AGCGTTATGGTGTGTGCGATGAAGAAGAGCTGAGGCTGATAGAGATGATGGAAGCTGAGG 1344
Query 1334 ACGATGAAGTGGACGACGAAGATGACTCGGATGAGGA-ATCGGACGATGCATCGGATGAG 1392
|||||||||||||||| ||||||||||||||||| || | | ||||||| |||||||||
Sbjct 1345 ACGATGAAGTGGACGAAGAAGATGACTCGGATGACGACA-CTGACGATGTATCGGATGAA 1403
Query 1393 GATGAGTCAGAAGATGA-G--GACATGGGC-T----TTA-ATGTCGATTATTTGTTATGA 1443
|||||||||||| |||| | |||||||| | || |||||||||||||||| |||
Sbjct 1404 GATGAGTCAGAAAATGATGATGACATGGGAATGGGATTTGATGTCGATTATTTGTTGTGA 1463
Query 1444 TTAGTGTT-GGTAATCCGTTAGTGTT-CGTTATTGAACTA-T-T---CCAC-GAGAAGTT 1495
|||||||| ||||||| |||||| || | ||||||||||| | | ||| | ||||||
Sbjct 1464 TTAGTGTTTGGTAATC-GTTAGTATTTC-TTATTGAACTAGTCTAGTCCAAAGGGAAGTT 1521
Query 1496 CTTCGTTTCTTTTGCTTAAGATTCTTCTTGTTGGCA---CAAACATACGAAATTATTAAA 1552
||| |||||||| ||| ||| ||| || | ||||||||| | || ||||||
Sbjct 1522 CTTTGTTTCTTTC-CTT------CTTATTG--GGAAATACAAACATACCATATCATTAAA 1572
Query 1553 CGAATTAGAAAAAAGTGACGTTGTGGTTTT 1582
|||||| |||||| ||||||||||||||||
Sbjct 1573 CGAATTTGAAAAATGTGACGTTGTGGTTTT 1602
> AT4G02760.3 | Symbols: | RNI-like superfamily protein | chr4:1223962-1228070
REVERSE LENGTH=2243
Length=2243
Score = 353 bits (191), Expect = 2e-96
Identities = 444/561 (79%), Gaps = 38/561 (7%)
Strand=Plus/Plus
Query 173 CTT-CCGCTGATGAATCCGTTCAGGATCGTCTCGTCGATCGTACTCTCGAACTCGCATCG 231
||| ||| |||||||| | |||||||||| || | |||||||||||| |||||||||||
Sbjct 440 CTTCCCG-TGATGAATTTGATCAGGATCGTTTCTTGGATCGTACTCTCCAACTCGCATCG 498
Query 232 CTTCTTCT-CGATTCCACGAAACGATGCTTCCGGAAACGAGCTTCTGTTCACAATTCCA- 289
|||| | | | | ||||| ||||| ||| | ||||||| || | | || |||||||
Sbjct 499 CTTC-TATACAAGTCCACCAAACGTTGCATAAGGAAACGTGCCACCCTCCAAAATTCCAC 557
Query 290 ATTCCTGGTTCCT-TCCT-CCAGAACTTACCATTAAGGTATTTTCGATGCTTGATACAAA 347
| |||||| ||| |||| || ||||| || |||||||| ||||| ||||||||||| ||
Sbjct 558 A-TCCTGG--CCTCTCCTCCCTGAACTAACTATTAAGGTCTTTTCAATGCTTGATACGAA 614
Query 348 GTCTCTGATGCAAGCAGCTGTGTGCTGCACCATGTTCAACAAATGTGCTATGGACCGTTT 407
|||||| |||||||| ||| ||| ||||| ||||||||||| ||||| ||||| ||| |
Sbjct 615 GTCTCTCATGCAAGCTTCTGCGTGTTGCACAATGTTCAACAAGTGTGCCATGGATCGTGT 674
Query 408 ATGTTACTCCCACATCGACTTGACAACCTCTG-CTAGATATGCTGATAAAGGAGTTGTGT 466
||||||||||||||||||| ||||||| ||| | | | ||| |||||| ||||||||||
Sbjct 675 ATGTTACTCCCACATCGACCTGACAACGGCTGCCGA-AGATGTTGATAATGGAGTTGTGT 733
Query 467 -C-TACTATGATCAATCGGGCTGGAAAAGAACTCAGATCCCTCAAACTTGGT-CGTGTTG 523
| || |||||| |||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 734 GCGTA--ATGATCCATCGGGCTGGAAAAGAACTCAGATCCCTCAAACTTGGTTC-TATTT 790
Query 524 -TTCGTACAGCTGGATCTGATTCTACTGCACCTTTGCTTAGCG-GATCTTGTCTTTCCCC 581
||| | |||||| | || | |||| | ||||||| | | |||| |||||| | ||
Sbjct 791 CTTCCT-CAGCTGAACCT-A--CTAC---ATCTTTGCTGA-CAAGATCCTGTCTTACTCC 842
Query 582 ACTAGCATATAATCATGGCTTT-CTTGGGAGTCGCTTGAGAAGCCTGCGGCTTTACAATC 640
|||| | | ||| ||||| ||| || ||| ||| ||||||||||| | |||||| |||
Sbjct 843 ACTAACTTTTAACCATGGTTTTACTGGGG-GTCATTTGAGAAGCCTACACCTTTACCATC 901
Query 641 TCAGACCTATGA-A-ATA-CAGGTCCTTATG-CGATGCGTTGTCAGTTTGTCCAAATATC 696
||||| |||| | || | ||||||||| | || |||||||| |||| |||| ||
Sbjct 902 TCAGA---ATGATAGATTGCGGGTCCTTATCTCC-TGTGTTGTCAGCTTGTTTAAATCTC 957
Query 697 ACTGATTTGAGGATTGTTGGA 717
|||||||||| ||||||||||
Sbjct 958 ACTGATTTGAAGATTGTTGGA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78112048020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5