BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490321
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02440.1 | Symbols: EID1 | F-box family protein | chr4:10724... 1304 0.0
> AT4G02440.1 | Symbols: EID1 | F-box family protein | chr4:1072481-1073779
FORWARD LENGTH=1299
Length=1299
Score = 1304 bits (706), Expect = 0.0
Identities = 1057/1209 (87%), Gaps = 94/1209 (8%)
Strand=Plus/Plus
Query 1 CCACAACAGTATAAGTGAATTTGGATAAGAAAGAAAGGGGCCGTTGTTagagagaagaag 60
||| |||||||||||||||||||||| |||||||| |||| |||||||||| |
Sbjct 14 CCATAACAGTATAAGTGAATTTGGAT----AAGAAAGGAGCCG--CCTAGAGAGAAG-A- 65
Query 61 agagagaTCCATGGCGGAATCAACCTTCTCTTGTGTACCAGATGACGTAGTCTTCAACAT 120
|| | |||||||||||||||| |||||||||| ||||||| |||||||||||||||||
Sbjct 66 AG-GCGATCCATGGCGGAATCTGTCTTCTCTTGTATACCAGAAGACGTAGTCTTCAACAT 124
Query 121 CTTCTTCAAGCTTCAAGACGATCCAAGAAATTGGGCTCGTCTCTCTTGCGTCTGCACCAG 180
|||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||
Sbjct 125 CTTCTTCAAGCTCCAAGATGATCCAAGAAACTGGGCTCGTCTCGCTTGCGTCTGCACCAA 184
Query 181 ATTCTCCTCAATTGTACGAAACGTTTGCTGTAAAACACAGTGCTACTCCGCTATCCCCAC 240
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 185 ATTCTCCTCAATTGTTCGAAACGTTTGTTGTAAAACTCAGTGCTACTCCGCTATCCCCAC 244
Query 241 CGTCATCTCCGA--T-CT-CCTC--CCT-CCT-----------T---CTTC--C-TCCAC 276
|||||||||||| | || |||| ||| ||| | |||| | |||||
Sbjct 245 CGTCATCTCCGATCTCCTCCCTCTTCCTCCCTCCGCCGCCGCATCCGCTTCTTCATCCAC 304
Query 277 CGCGGCGGATTCGTCTCTTCCTCCTCCCGGTGGTTGGGCTTCTCTT-TTCAAACTCGCCG 335
||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||| |
Sbjct 305 CGCGGCGGATTCGTCTCTTACTCCTCCCGGTGGTTGGGCTTCT-TTATACAAACTCGCTG 363
Query 336 TCTGCTGTCCTGGTCTCTTCCACGCTGGAATTCTCCTCGAAAACTCCGATTTCGGTTTAG 395
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTTGTTGTCCTGGTCTCTTCCACGCTGGAATTCTCCTCGAAAACTCCGATTTCGGTTTAG 423
Query 396 AACGTGAGCTAGGTCCCGATCAAAACCTCGATCCGAAACCTACTACGACGGATCTAGCTA 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AACGTGAGCTAGGTCCCGATCAAAACCTCGATCCGAAACCTACTACGACGGATCTAGCTC 483
Query 456 GTGACGACGGAGAAGTTTGGAAACCAGTCGGATCTGGTTTAGAAACGACTTCGTTTTGGT 515
| |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 484 TTAACGACGAAGAAGTTTCGAAACCAGTTGGATCTGGTTTAGAAACGACTTCGTTTTGGT 543
Query 516 CTCTGTATGACGATCTCTACACCGATACTATTCCCGCTCCTC-TC--GAAGA---AATCG 569
|||| ||||| ||||||||||| ||||||||||||||||||| || ||||| |||||
Sbjct 544 CTCTATATGATGATCTCTACACAGATACTATTCCCGCTCCTCCTCCCGAAGATTCAATCG 603
Query 570 A-GA-C--GA-G------T-GA---GA-T-----CAGACCTGGAAGAGATCTTCCGGTAA 608
| || | || | | || || | |||||||||| |||||||||||||||
Sbjct 604 ACGATCAAGAAGAAGAAATCGAAACGAGTGAGATCAGACCTGGACGAGATCTTCCGGTAA 663
Query 609 GGAAACGAAGGAAGATTTGTAGATCTTTAGGATCTCATATAGCTTCCGGTGGCTGGAATC 668
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |
Sbjct 664 GGAAACGAAGGAAGATTTGTCGATCTCTAGGATCTCATTTAGCTTCCGGTGGCTGGAACC 723
Query 669 TTAGCCGTGAACAAGGCAACAAGCTTCTGGCGAGTAGATTTCGAGGTGATTGTCTCTACA 728
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 724 TTAGCCGTGAACAAGGCAACAAGCTTCTCGCGAGTAGATTCCGAGGTGATTGTCTCTACA 783
Query 729 TTTGCAATTGGCCTGGATGTATTCACGTTGAAGAGAAACGAAATTACATGTTGTTTAGAG 788
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 784 TTTGCAATTGGCCTGGGTGTATTCACGTAGAAGAGAAACGAAATTACATGTTGTTTAGAG 843
Query 789 GTGTTTTCAAGGATTTCAAACGGTCTCGAGTTTGGAGAACGATAAATGACGGTAATCATC 848
| || ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 844 GAGTCTTCAAGGATTTCAAAAGGTCTAGAGTTTGGAGAACGATAAACGACGGTAATC--- 900
Query 849 GGAGTAAGATCTCGGGGCTGAAATGCGCCTTTTGTTTGTGCCATGAGACTTGGGATTTGC 908
||||||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 901 GGAGTAAGACCTCGGGTTTGAAATGCGCGTTTTGTTTGTGCGATGAGACTTGGGATTTGC 960
Query 909 ATTCATCGTTTTGTTTGAGAAGAGTCTTTGGGTTTCATGATGATGGTGAACCAGTTGTGA 968
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 961 ATTCATCGTTTTGTTTGAGAAGAGTGTTTGGGTTTCATGATGATGGTGAACCAGTTGTGA 1020
Query 969 GAGCTTATGTTTGTGAGAATGGTCATGTCTCTGGTGCTTGGACTGCTTTACCTCTCTACA 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAGCTTATGTTTGTGAGAATGGTCATGTCTCTGGTGCTTGGACTGCTTTACCTCTCTACA 1080
Query 1029 CTTGA--G---A---GAG-GC-C---T-TTTGATTCTTCTTCTACGGTCTAAAGTCTTCA 1074
||||| | | ||| | | | ||| |||||||||| ||||||| |||||| ||
Sbjct 1081 CTTGATAGCTCACTAGAGAGGACAGGTCTTTCATTCTTCTTCCACGGTCTCAAGTCT-CA 1139
Query 1075 -TCTTGTTTG--G-ATTTTGTAGGAATCGT-T--TT-T----CAA-TTCTGGTTAATGTT 1121
||||||||| | |||| |||||||| || | || | ||| ||||||||||||||
Sbjct 1140 ATCTTGTTTGATGTATTT-GTAGGAATAGTGTCATTGTGTTTCAAATTCTGGTTAATGTT 1198
Query 1122 TAACTAATG 1130
||| |||||
Sbjct 1199 TAAGTAATG 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5