BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490342 Length=2898 Score E Sequences producing significant alignments: (Bits) Value AT4G02280.1 | Symbols: SUS3, ATSUS3 | sucrose synthase 3 | chr4... 4196 0.0 > AT4G02280.1 | Symbols: SUS3, ATSUS3 | sucrose synthase 3 | chr4:994927-998967 FORWARD LENGTH=2917 Length=2917 Score = 4196 bits (2272), Expect = 0.0 Identities = 2732/2941 (93%), Gaps = 83/2941 (3%) Strand=Plus/Plus Query 1 ACATGTACTCTCCTCCAACACAAACACGTCACTTGTAGCaaaaaaaCAGTAACAAGAAAC 60 ||||||||||||||| |||| |||||||||||||||||| ||||||||| ||||||| Sbjct 1 ACATGTACTCTCCTCTAACATAAACACGTCACTTGTAGC--GAAAACAGTATCAAGAAAA 58 Query 61 AGAGAAGATCAAACACGtcttcttcttcgtctctctctcttTGTCGCATAAAATTCCAGA 120 |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| Sbjct 59 AGAGAAGATCAAACACGTCTTCTT-TTC-TCTCTCTCTCTTTGTCGCCTAAAATTCCAGA 116 Query 121 TTCACTCTGCTTTTTATCC-TTTAATCAGTGATTTTTCCTTTTTATTA-CGATCACT-G- 176 ||||||||||||||| || |||||||| |||||||||| ||||| || | ||| | | Sbjct 117 ATCACTCTGCTTTTTACCCTTTTAATCAATGATTTTTCC-TTTTAGTAGCAATCGTTGGT 175 Query 177 AAAGCGaaaaaaaCAAAACTTTTCT----C-A--A--C-------CT--T--T--TCTGA 214 | || |||||| |||||||||| | | | | | | | ||||| Sbjct 176 GATTCG--AAAAACCAAACTTTTCTCGGACTAGGATTCTAGGGTTTTAGTGATCATCTGA 233 Query 215 ATATCCATGGCAAACCCTAAGCTCACTAGGATTATAAGCACAAGGGATCGCGTGCAGGAC 274 |||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||| Sbjct 234 ATATTCATGGCAAACCCTAAGCTCACTAGGGTTCTAAGCACAAGGGATCGCGTGCAAGAC 293 Query 275 ACGCTCTCTGCTCACCGCAACGAACTCGTCGCTCTTCTCTCCAGATATGTGGATCAGGGA 334 ||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 294 ACGCTTTCCGCTCACCGCAACGAACTCGTTGCTCTTCTCTCCAGGTATGTGGATCAGGGG 353 Query 335 AAAGGGATTCTTCAGCCACATAACTTAATCGACGAACTCGAATCTGTAATCGGAGACGAT 394 |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 354 AAAGGGATTCTTCAACCACATAACTTAATTGACGAACTCGAATCTGTTATCGGAGACGAT 413 Query 395 GCAACGAAA-CAGAGTCTCTCTGATGGTCCTTTTGGAGAAATCCTTAAATCAGCAATGGA 453 | ||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 414 GAAAC-AAAGAAGAGTCTCTCTGATGGTCCTTTTGGAGAGATCCTTAAATCAGCAATGGA 472 Query 454 AGCGATAGTTGTGCCACCATTTGTTGCCTTAGCCGTTAGACCAAGACCTGGTGTTTGGGA 513 ||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 473 AGCTATAGTTGTACCACCTTTTGTTGCGTTAGCCGTTAGACCAAGACCTGGTGTTTGGGA 532 Query 514 ATATGTTCGTGTTAATGTCTTCGAGCTAAGTGTTGAACAGTTAACAGTCTCTGAGTATCT 573 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 533 ATATGTTCGTGTTAATGTCTTCGAGCTAAGTGTTGAACAATTAACAGTCTCTGAGTATCT 592 Query 574 TCGTTTCAAAGAAGAACTCGTTGATGGACCTAATAGTGACCCTTTTCCTCTTGAGCTTGA 633 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 593 TCGTTTCAAAGAAGAACTCGTTGATGGACCTAATAGTGACCCTTTTTGTCTTGAGCTTGA 652 Query 634 TTTCGAGCCCTTTAACGCAAACGTGCCACGTCCTTCTCGTTCGTCTTCCATTGGTAATGG 693 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 653 TTTCGAGCCCTTTAACGCAAACGTGCCACGTCCTTCTCGTTCGTCTTCGATTGGTAATGG 712 Query 694 AGTTCAGTTTCTGAATCGTCACTTGTCTTCTGTAATGTTCCGTAACAAAGATTGCTTGGA 753 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 713 AGTTCAGTTTCTGAATCGTCACTTGTCTTCTGTTATGTTCCGTAACAAAGATTGCTTGGA 772 Query 754 GCCTCTGCTTGATTTCCTTAGAGTTCATAAGTACAAAGGTCATCCGTTGATGTTGAATGA 813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 GCCTCTGCTTGATTTCCTTAGAGTTCATAAGTACAAAGGTCATCCGTTGATGTTGAATGA 832 Query 814 TCGGATTCAAAGCATATCTAGGCTTGAAAACCAACTTAATAAAGCAGAAGATCATATCTC 873 ||||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||| Sbjct 833 TCGGATTCAAAGCATATCTAGGCTTCAAATCCAGCTTAGTAAAGCAGAAGATCATATCTC 892 Query 874 TAAGCTTTCACAAGAAACTCCATTCTCGGAATTCGAATATGTGCTT-CAAGGAATGGGTT 932 ||||||||||||||||||||| ||||||||||||||||| | | || ||||||||||||| Sbjct 893 TAAGCTTTCACAAGAAACTCCGTTCTCGGAATTCGAATACGCG-TTGCAAGGAATGGGTT 951 Query 933 TTGAGAAAGGATGGGGAGATACCGCAGGGCGAGTTCTTGAAATGATGCATCTTCTCTCTG 992 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 952 TTGAGAAAGGATGGGGAGATACCGCAGGGAGAGTTCTTGAAATGATGCATCTTCTCTCTG 1011 Query 993 ATATTCTTCAAGCTCCTGATCCTTCGACCTTGGAGAAGTTTCTCGGGATGGTACCGATGG 1052 |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| Sbjct 1012 ATATTCTTCAAGCTCCTGATCCTTCGTCCTTGGAGAAGTTTCTTGGGATGGTACCAATGG 1071 Query 1053 TTTTCAACGTTGTGATCTTATCTCCACATGGATATTTTGGGCAAGCCAATGTCTTAGGAT 1112 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 1072 TTTTCAACGTTGTGATCTTATCTCCACATGGATATTTCGGGCAAGCCAATGTTTTAGGCT 1131 Query 1113 TACCTGACACTGGTGGACAAGTTGTCTATATTCTAGACCAAGTCCGTGCCCTTGAGACCG 1172 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1132 TACCTGACACTGGTGGACAAGTTGTCTATATTCTTGACCAAGTCCGTGCCCTTGAGACTG 1191 Query 1173 AAATGCTGTTGAGAATAAAGAGACAGGGGTTGGATATAACACCTAGGATTCTTATTGTAA 1232 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1192 AAATGCTGTTGAGAATAAAGAGACAGGGGTTGGATATATCACCTAGTATTCTTATTGTAA 1251 Query 1233 CTAGGTTGATACCGGATGCTAAAGGAACCACGTGTAACCAGCGGTTAGAGAGAGTCAGCG 1292 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1252 CTAGGTTGATACCGGATGCTAAAGGAACTACGTGTAACCAGCGGTTAGAGAGAGTCAGCG 1311 Query 1293 GAACAGAGCATACTCATATTCTCCGGGTTCCTTTTAGGTCCGATAAAGGGATCCTCCGTA 1352 |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| Sbjct 1312 GAACAGAGCATACTCATATTCTCCGGGTTCCTTTTAGGTCTGAGAAAGGAATCCTCCGTA 1371 Query 1353 AGTGGATTTCAAGATTCGACGTATGGCCTTATCTGGAGAACTATGCTCAAGATGCAGCAA 1412 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1372 AGTGGATTTCAAGATTCGACGTATGGCCTTATCTAGAGAACTATGCTCAGGATGCAGCAA 1431 Query 1413 GCGAGATTGTAGGTGAATTACAAGGTGTACCCGATTTTATCATCGGTAACTATAGTGACG 1472 |||||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||||| Sbjct 1432 GCGAGATTGTCGGTGAATTGCAAGGCGTACCGGACTTTATCATCGGTAACTATAGTGACG 1491 Query 1473 GAAACCTTGTTGCATCGTTAATGGCACATAGAATGGGTGTTACACAGTGTACTATTGCAC 1532 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1492 GAAACCTTGTTGCATCGTTAATGGCACATAGAATGGGTGTTACACAATGTACTATTGCAC 1551 Query 1533 ATGCTTTGGAGAAAACCAAGTATCCAGATTCAGACATTTACTGGAAAGATTTCGACAACA 1592 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1552 ATGCTTTGGAGAAAACCAAGTATCCAGATTCAGACATTTACTGGAAAGACTTCGACAACA 1611 Query 1593 AGTATCATTTCTCTTGTCAATTCACAGCTGATCTAATCGCAATGAACAACGCAGATTTCA 1652 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1612 AGTATCATTTCTCTTGTCAATTCACAGCTGATCTTATCGCAATGAACAACGCAGATTTCA 1671 Query 1653 TCATCACAAGCACTTACCAAGAAATCGCGGGAACGAAGAACACGGTCGGTCAATATGAAA 1712 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1672 TCATCACAAGCACTTACCAAGAAATCGCAGGAACGAAGAACACCGTCGGTCAATATGAAA 1731 Query 1713 GCCATGGGGCTTTTACGCTCCCGGGACTATACAGAGTAGTACACGGCATCGATGTGTTTG 1772 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1732 GCCACGGGGCTTTTACGCTCCCGGGACTATATAGAGTAGTACACGGCATCGATGTGTTTG 1791 Query 1773 ATCCGAAGTTCAACATAGTCTCGCCCGGCGTAGACATGGCCATATATTTCCCGTTTTCTG 1832 |||||||||||||||||||||||||||| | ||||||| ||||||||||||||| ||| | Sbjct 1792 ATCCGAAGTTCAACATAGTCTCGCCCGGTGCAGACATGACCATATATTTCCCGTATTCCG 1851 Query 1833 AAGAAACTAAGAGACTTACAGCTTTACATAGTTCAATAGAGGAAATGCTCTATAGCCCTG 1892 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1852 AAGAAACTAGGAGACTTACAGCTTTACATGGTTCAATAGAGGAAATGCTCTATAGCCCTG 1911 Query 1893 AGCAGACTGATGAGCATGTCGGTACACTGAGCGATCGGTCAAAGCCAATACTCTTCTCTA 1952 | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1912 ACCAGACTGATGAGCATGTCGGTACACTGAGTGATCGATCAAAGCCAATACTCTTCTCTA 1971 Query 1953 TGGCGAGGCTCGACAAAGTGAAGAACATCTCCGGTTTAGTTGAGATGTACAGCAAGAACA 2012 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1972 TGGCGAGGCTCGACAAAGTGAAGAACATCTCCGGTTTAGTTGAGATGTATAGTAAGAACA 2031 Query 2013 CAAAGTTGAGGGAGCTGGTTAATCTGGTTGTAATATCTGGTAACATTGATGTGAACAAGT 2072 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2032 CAAAGTTGAGGGAGCTGGTTAATCTGGTTGTAATAGCTGGTAACATTGATGTGAACAAGT 2091 Query 2073 CCAAAGACAGAGAAGAAATCGCAGAGATTGAGAAAATGCAGAACCTTGTGAAGAGTTACA 2132 ||||||| ||||||||||||| |||||||||||||||||| |||||| |||||| ||||| Sbjct 2092 CCAAAGATAGAGAAGAAATCGTAGAGATTGAGAAAATGCATAACCTTATGAAGAATTACA 2151 Query 2133 AGCTTGATGGACAGTTTCGTTGGATAACGGCTCAGACAAACCGAGCTCGAAATGGTGAGC 2192 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 2152 AGCTTGATGGACAGTTTCGTTGGATAACTGCTCAGACTAACCGAGCTCGAAATGGTGAGC 2211 Query 2193 TTTACCGATACATCGCCGATACAAGAGGTGCTTTTGCTCAGCCTATTAGGCTATTAGCTA 2252 ||||||| |||||||| ||||||||||||||||||||||||||| | | | | Sbjct 2212 TTTACCGCTACATCGCGGATACAAGAGGTGCTTTTGCTCAGCCT----G-C-----G-T- 2259 Query 2253 TGAAAACCTGCATTCTACGAGGGTTTTGGGCTTACGGTATTGGAAGCGATGACTTGCGGG 2312 | | | | | |||| |||||| ||||||||| |||||||||||||||||||| Sbjct 2260 T-----C-T--A--C---GAGGCTTTTGGACTTACGGTAGTGGAAGCGATGACTTGCGGG 2306 Query 2313 CTTCCGACTTTCGCCACTTGTCA-GGTGGTCCTGCAGAGATCATCGAGCACGGGCTCTCG 2371 || |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 2307 CTCCCGACTTTTGCCACTTGTCACGGTGGTCCAGCAGAGATCATCGAGCACGGGCTCTCG 2366 Query 2372 GGTTTCCACATCGATCCATACCATCCTGAGCAAGCGGGTAACATAATGGCTGATTTCTTT 2431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2367 GGTTTCCACATCGATCCATACCATCCTGAGCAAGCGGGTAACATAATGGCTGATTTCTTT 2426 Query 2432 GAACGTTGTAGGGAAGATCCAAACCATTGGAAGAAAGTATCAGACGCTGGTCTCCAAAGG 2491 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2427 GAACGTTGTAAGGAAGATCCAAACCATTGGAAGAAAGTATCAGACGCTGGTCTCCAAAGG 2486 Query 2492 ATATACGAAAGGTACACATGGAACATATACTCGGAGAGATTGATGACACTAGCTGGTGTG 2551 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2487 ATATACGAAAGGTACACATGGAAGATATACTCGGAGAGATTGATGACACTAGCTGGTGTG 2546 Query 2552 TATGGTTTCTGGAAATATGCATCAAAATTGGAGCGTCGTGAGACTCGGCGATATCTTGAA 2611 ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| Sbjct 2547 TATGGTTTCTGGAAATACGTATCGAAATTGGAGCGTCGTGAGACTCGGCGATATCTTGAA 2606 Query 2612 ATGTTCTACATTCTCAAATTCCGCGACTTGGTGAAAACTGTTCCT-CTAACCGCCGACGA 2670 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 2607 ATGTTCTACATTCTCAAATTCCGCGACTTGGTGAAAACTGTTCCTTC-AACCGCCGATGA 2665 Query 2671 CTGACCCGGTTGGGCGTAGGATGAAGTGTTGGGCTGTAAAAAAGAATAAAAGATGAGTAA 2730 ||||||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 2666 CTGACCCGGTTCAGCGTTGGATGAAGTGTTGGACTGTAAAAAAGAATAAATGATGAGTAA 2725 Query 2731 CCTTGGCTATGTAG--TATGTACCCTATGTTGTGTGTATGAACGGAAGA-TTTGTTCCAT 2787 | ||||||||||| ||||| | ||| || |||||||| |||||| |||||||||| Sbjct 2726 CTTTGGCTATGTACCCTATGT----TGTGT-GTATGTATGAAAGGAAGAATTTGTTCCAT 2780 Query 2788 -------GGAGTTATTACGAACTTCGTGGTACTTTTGTGTTGTCTCATGTGTGT--GACT 2838 ||||| |||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 2781 CTTCCATGGAGTAATTACGAATTTGGTGGTACTTTTGTGTTGTCTCATGTGTGTCTGACT 2840 Query 2839 GACATGTTGAAAAT-ATTCACGTGAAGTTTGTAGCTTATAATAAAAAGTCTTCAATGGAA 2897 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2841 GACATGTTGAAGATTATTCACGTGAAGTTTGTAGCTTATAATAAAAAGTCTTCAATGGAA 2900 Query 2898 C 2898 | Sbjct 2901 C 2901 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 144029293353 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5