BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490383
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01935.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1424 0.0
AT4G01915.3 | Symbols: | unknown protein; Has 35333 Blast hits... 420 1e-116
AT4G01940.1 | Symbols: NFU1, AtCNFU1 | NFU domain protein 1 | c... 405 4e-112
> AT4G01935.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; Has 37 Blast hits to 37 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink). | chr4:841057-842364 FORWARD LENGTH=952
Length=952
Score = 1424 bits (771), Expect = 0.0
Identities = 882/936 (94%), Gaps = 6/936 (1%)
Strand=Plus/Plus
Query 1 tttttttGTATGGATGAGATTGGAAGATGTTTGTCTTAACGATATCTTCTCCTTCAACTC 60
||||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||
Sbjct 20 TTTTTTTGTATGGATAAAATTGGAAAATGTTTGTCTTAGCGATATCTTCTCCTTCAACGA 79
Query 61 CTCTCATCAGACCACTAAAACGAAACGGGCCAAACCGGTCACCGGTTCGAAAAATCCTCT 120
||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 80 CTCTCATCAAACCATTAAAACGAAATGGGCCAAACCGGTCACCGGTTCGAAAAATCCTTT 139
Query 121 GCATGAGCCAGAGGAGGCAGAGCAAAACCGGTACCGGAAAATCTTGGATAGTCCCAGTAA 180
|| |||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct 140 GCCTGAGCCAGAGGAAGCAGAGCAAAACCAGTACCGGCAAATCTTGGATCGTCCCAGTAA 199
Query 181 GTCTCTCTCTTTTTGGTTCAGGCTTCGTCTTGGGTCCTCTTCTCGATGGTCTCCACTCAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 200 GTCTCTCTCTTTTTGGTTCAGGCTTCGTCTTGGGTCCTCTTCTCGATGGTATCCACTCAC 259
Query 241 GTGTTGATCTCGTGGTTTACCAAAACGGAGCTTTTCAAATCGGTCCCCTTCATACAAACA 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GTGTCGATCTCGTGGTTTACCAAAACGGAGCTTTTCAAATCGGTCCCCTTCATACAAACA 319
Query 301 TCTGGGTCCCGTTCTTGCTTGGCTTATTTTATTGTACAGTAGGTTTACTACAACTCCTAT 360
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 320 TCTGGGTACCGTTCTTGCTTGGCTTATTTTACTGTACAGTAGGTTTACTACAACTCCTAT 379
Query 361 TGGATGAGACAACCTCTATAAAG-CCTCCACGTGGCAGCTTGGACAAAACCATAATTTCA 419
||||||||||||||||| ||| ||||||||||| ||| ||||||||||| ||||||||
Sbjct 380 TGGATGAGACAACCTCT-GCAAGTCCTCCACGTGGTAGCCTGGACAAAACCGTAATTTCA 438
Query 420 CTCTTAGCACTGCTGGTGTTCTTAGAGTTAAGTGCTGAAATGTACAAAGCTGGAGTTTCA 479
||||||||| || || | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 439 CTCTTAGCATTGATGTTCTTCTTAGAGCTAAGTGCTGAAATGTACAAAGCTGGAGTTTCA 498
Query 480 GACAACATAGAAGCTTACATTCTATTTGCCTTAGCAGAATTTATTTGGTTCTCTTTGGAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GACAACATAGAAGCTTACATTCTATTTGCCTTAGCAGAATTTATTTGGTTCTCTTTGGAT 558
Query 540 AGAACTTGGCTTGGCTTCACCATTGCCACTCTCCTCGGTGTTGCCTGTCCTTTAGCCGAA 599
||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 559 AGAACTTGGATTTGCTTCACCATTGCCACTCTCCTTGGTGTCGCCTGTCCTTTAGCCGAA 618
Query 600 ATCCCCATCATGCAATTCTTCCATCTGTGGTACTATCCAGAAGCTAACATAGAGATCTTT 659
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 619 ATCCCCATCATGCAATTCTTCCATCTGTGGTACTATCCAGAAGCAAACATAGAAATCTTT 678
Query 660 GGCCAGGGATTGGTTACTTGGACAACAACTTGCTACTTTGTCTACACACCGTTCTTGATC 719
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GGCCAGGGACTGGTTACGTGGACAACAACTTGCTACTTTGTCTACACACCGTTCTTGATC 738
Query 720 AACCTAGCAAGATGGCTCAGGACAGTTATGGAGAGGACGACTACTGATGTAGACATTAGC 779
||||| ||||||||||| ||||||||||||||||||||||||| ||| || |||||||||
Sbjct 739 AACCTGGCAAGATGGCTAAGGACAGTTATGGAGAGGACGACTATTGAAGTGGACATTAGC 798
Query 780 TCAAGCGAAGAGCAATAATGTTTTTACATAATATAGTGAG-TTTCTTCATGCTTTCTAGC 838
|||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 799 TCAAACAAAGAGCAATAATGTTTTTACATAATATAGTG-GCTTTCTTCATGCTTTCTAGC 857
Query 839 TTGTAAAGGTTACATTAGATATGTCCTTGAACTTTTCTTTAATAGCTGC-TCGTATTCCC 897
|||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||
Sbjct 858 TTGTAAAGGTTACATTAGATATGTCCTTAAACTTTTCTTTAATCGCTGCCT-GTATTCCC 916
Query 898 ATTCCAATCGATTCTGGTCCAACATATTTTACAACG 933
||||||||||| || |||||||||||||||||||||
Sbjct 917 ATTCCAATCGACTCCGGTCCAACATATTTTACAACG 952
> AT4G01915.3 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:827237-828607
FORWARD LENGTH=768
Length=768
Score = 420 bits (227), Expect = 1e-116
Identities = 287/316 (91%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 27 ATGTTTGTCTTAACGATATCTTCTCCTTCAACTCCTCTCATCAGACCACTAAAACGAAAC 86
||||| |||||| |||||||| |||||||||| ||||||| |||||| |||||| |||
Sbjct 1 ATGTTAGTCTTAGCGATATCTCCTCCTTCAACGACTCTCATAAGACCATTAAAACAAAAT 60
Query 87 GGGCCAAACCGGTCACCGGTTCGAAAAATCCTCTGCATGAGCCAGAGGAGGCAGAGCAAA 146
|||| |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 61 GGGCAAAACCGGTCACCGGTTTGAAAAATCGTCTGCTTGAGCCAGAGGAGGCAGAGCAAA 120
Query 147 ACCGGTACCGGAAAATCTTGGATAGTCCCAGTAAGTCTCTCTCTTTTTGGTTCAGGCTTC 206
|| || ||||||||||| ||||| |||||||||| ||||| ||||||||||||||||||
Sbjct 121 ACTGGCACCGGAAAATCATGGATCGTCCCAGTAAACCTCTCGCTTTTTGGTTCAGGCTTC 180
Query 207 GTCTTGGGTCCTCTTCTCGATGGTCT-C-C--ACTCACGTGTTGATCTCGTGGTTTACCA 262
|| |||||||||||||||||||||| | | ||||||||||||||||||| ||||||||
Sbjct 181 TTCGTGGGTCCTCTTCTCGATGGTCTCCACTGACTCACGTGTTGATCTCGTTGTTTACCA 240
Query 263 AAACGGAGCTTTTCAAATCGGTCCCCTTCATACAAACATCTGGGTCCCGTTCTTGCTTGG 322
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 AAACGGAGCTTTTCAAATCGGTCCTCTTCATACAAACATCTGGGTCCCGTTCTTGCTTGG 300
Query 323 CTTATTTTATTGTACA 338
||||||||| ||||||
Sbjct 301 CTTATTTTACTGTACA 316
Score = 134 bits (72), Expect = 2e-30
Identities = 92/101 (91%), Gaps = 4/101 (4%)
Strand=Plus/Plus
Query 612 CAATTCTTCCATCTGTGGTAC----TATCCAGAAGCTAACATAGAGATCTTTGGCCAGGG 667
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 315 CAATTCTTCCATCTGTGGTACTATATATCCAGAAGCAAACATAGAGATCTTTGGCCAGGG 374
Query 668 ATTGGTTACTTGGACAACAACTTGCTACTTTGTCTACACAC 708
||||||||| ||||| ||||| |||||||| ||||||||||
Sbjct 375 ATTGGTTACGTGGACGACAACGTGCTACTTCGTCTACACAC 415
> AT4G01940.1 | Symbols: NFU1, AtCNFU1 | NFU domain protein 1 |
chr4:841989-843459 REVERSE LENGTH=1043
Length=1043
Score = 405 bits (219), Expect = 4e-112
Identities = 255/272 (94%), Gaps = 4/272 (1%)
Strand=Plus/Minus
Query 664 AGGGATTGGTTACTTGGACAACAACTTGCTACTTTGTCTACACACCGTTCTTGATCAACC 723
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 AGGGACTGGTTACGTGGACAACAACTTGCTACTTTGTCTACACACCGTTCTTGATCAACC 878
Query 724 TAGCAAGATGGCTCAGGACAGTTATGGAGAGGACGACTACTGATGTAGACATTAGCTCAA 783
| ||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct 877 TGGCAAGATGGCTAAGGACAGTTATGGAGAGGACGACTATTGAAGTGGACATTAGCTCAA 818
Query 784 GCGAAGAGCAATAATGTTTTTACATAATATAGTGAG-TTTCTTCATGCTTTCTAGCTTGT 842
| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 817 ACAAAGAGCAATAATGTTTTTACATAATATAGTG-GCTTTCTTCATGCTTTCTAGCTTGT 759
Query 843 AAAGGTTACATTAGATATGTCCTTGAACTTTTCTTTAATAGCTGC-TCGTATTCCCATTC 901
|||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||
Sbjct 758 AAAGGTTACATTAGATATGTCCTTAAACTTTTCTTTAATCGCTGCCT-GTATTCCCATTC 700
Query 902 CAATCGATTCTGGTCCAACATATTTTACAACG 933
||||||| || |||||||||||||||||||||
Sbjct 699 CAATCGACTCCGGTCCAACATATTTTACAACG 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5