BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490390
Length=2021
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01870.1 | Symbols: | tolB protein-related | chr4:808376-81... 2848 0.0
> AT4G01870.1 | Symbols: | tolB protein-related | chr4:808376-810446
REVERSE LENGTH=2071
Length=2071
Score = 2848 bits (1542), Expect = 0.0
Identities = 1847/1994 (93%), Gaps = 22/1994 (1%)
Strand=Plus/Plus
Query 1 ATCCAAAACTCGACAATGGAAACTCCCAAAGGCACCATCATCTTCACCACCATTGGTCGA 60
||| ||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||
Sbjct 1 ATCAAAAACTCGACAATGGAAACTCCCAAAGGCACTATCATTTTCACCACCGTCGGTCGA 60
Query 61 ACTCACTACGGCTTCGACGTCTTCTCTCTTC-ACATCGCCACCACCGTCGAACGCCGCTT 119
|||||||||||||||||||||||||||| || |||| |||||| ||||||||||||| ||
Sbjct 61 ACTCACTACGGCTTCGACGTCTTCTCTC-TCAACATAGCCACCTCCGTCGAACGCCGTTT 119
Query 120 AACAGACGGCGTTTCAGTTAACTTCAACGCTCAATTTGTCAACGATAAAAGCGATGATGT 179
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 AACAGACGGCGTTTCCGTGAACTTCAACGCTCAATTCGTCAACGATAAAAGCGATGATGT 179
Query 180 CGTTTTTGTTTCGGAACGAAACGGATCCGCCCGGATTTACAAAACCCGACCCGGAATTTC 239
||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 180 CGTCTTTGTTTCGGAAAGAAACGGATCCGCCAGGATTTACAAAACCCGATCCGGAATTTC 239
Query 240 TGAA-CCCGAGCA-ACTTCCCGGAGCTCCGGAAAGCTACTTCCACGACCGTCCTATCATT 297
| || |||||||| | ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 240 T-AAGCCCGAGCAGA-TTCCCGGAGCTCCAGAGAGCTACTTCCACGACCGTCCTATCATC 297
Query 298 ACTC-AATCAAACAGACTCTATTTCATCTCTGCTCACGAACAACCTGATCGTCATTTCAA 356
|||| || | ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 298 ACTCAAAAC-AACAGACTCTATTTCATCTCTGCTCACGAGCAACCTGATCGTTATTTCAA 356
Query 357 GAATTGGTCTGCGCTTTACACCGTGGAGCTCAACGGCG-AGGAGAGAGAAGTTACACGTG 415
|||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 357 GAATTGGTCTGCGCTTTACACCGTGGAGCTCAACAGCGCA-AAGAGAGAAGTTACACGTG 415
Query 416 TCACTCCATTAGACACCGCCGA-TTTCAGCCCGGCGGTTTCTCAATCTGGAGATTTCTTA 474
|||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 416 TCACTCCACCAGACACCGCCGACTTT-AGTCCGGCGGTTTCTCAATCTGGAGATTTCTTA 474
Query 475 GCCGTCGCGTCATATGGATCTCGCTCTTGGGGCGGTGAGTTTCACGAGATCAACACTGAT 534
||||| || || |||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 475 GCCGTTGCTTCTTATGGAACTCGCTCTTGGGGTGGTGAGTTTCACGAGATCAACACTGAT 534
Query 535 ATTACTGTTTTTAAAGCATCTGAACCAGAGACAAGAGTGGTGATTTGCGAGCGTGGTGGT 594
||||||||||| |||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 535 ATTACTGTTTTCAAAGCATCAAAACCAGAGACAAGAGTGGTTATCTGCGAGCGTGGTGGA 594
Query 595 TGGCCGACTTGGTCCGGCGATTCAACTGTTTTCTTCCACCACCAAGCAGACGACGGTTGG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGGCCGACTTGGTCCGGCGATTCAACTGTTTTCTTCCACCACCAAGCAGACGACGGTTGG 654
Query 655 TGGAGCATTTTCCGGGTAGATATACCGGAGAACTTCaaaaaaaaTTCCGGTTTCCCGATC 714
|||||||| ||||||||||||||||||||||| |||| || || ||| |||||| |||
Sbjct 655 TGGAGCATCTTCCGGGTAGATATACCGGAGAATTTCACGGAATATACCGATTTCCCAATC 714
Query 715 ACACCGATCCGAGTCACTCCATCAGGACTCCATTGTTTCACTCCTGCAGCTTTCCACGAC 774
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 715 ACACCAATCCGAGTCACTCCATCTGGACTCCATTGCTTCACTCCTGCAGCTTTCCGCGAC 774
Query 775 GGAAAAAGAATCGCCGTCGCAACTCGCCGTCGCGGCGTTAACCACCGCCACATCGAGATT 834
|| ||| |||||||| | |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 775 GGGAAACGAATCGCCTTAGCAACTCGCCGTCGCGGCGTCAACCACCGTCACATCGAGATT 834
Query 835 TACGACCTTGACCACAAAACGTTTCAGCCGGTGACTGAGCCACTCAATCCGAGTTTCCAC 894
||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 835 TACGACCTTGAAAACACAACGTTTCAGCCGGTGACTGAGTCACTCAATCCGAGTTTCCAC 894
Query 895 CATTACAACCCCTTCGTATCTCCAGATTCCGAGTTCCTCGGCTACCACCGATTCAGAGGC 954
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 CATTACAACCCTTTCGTGTCTCCAGACTCCGAGTTCCTCGGCTACCACCGATTCAGAGGC 954
Query 955 GAGTCGCCTCAGGGCGAGTCAATCGTTCCCAACATCGAGTCCATCGTTTCACCAATCAAA 1014
||||| |||| |||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 955 GAGTCAACTCAAGGCGAGTCAATCGTACCTAACATCGAATCCATCGTTTCACCAATCAAA 1014
Query 1015 ACCCTCCGTTTACTCAGAATCAACGGATCGTTTCCATCATCATCTCCCAACGGTGATCTA 1074
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 ACCCTCCGATTACTAAGAATCAACGGATCGTTTCCATCATCATCTCCCAACGGTGATCTA 1074
Query 1075 ATCGCACTAAATTCCGATTTCGACATCAACGGTGGTATCAAAGTAGCTAAATCCGACGGT 1134
|||||| | || ||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1075 ATCGCATTGAACTCCGATTTCGACATCAACGGTGGAATCAAAGTATCTAAATCCGACGGT 1134
Query 1135 TCAAAACGATGGACGTTGATCAAAGACCGTACAGCTTTCTACAATTCATGGAGTCCAACG 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TCAAAACGATGGACGTTGATCAAAGACCGTACAGCTTTCTACAATTCATGGAGTCCAACA 1194
Query 1195 GAGCGTCATGTAATCTACACATCTCTCGGTCCGATCTTC-CGTCCGGCGGGAATCGCCGT 1253
|||||||||||||||||||||||||| ||||| |||||| | ||||||| ||||||| ||
Sbjct 1195 GAGCGTCATGTAATCTACACATCTCTAGGTCCAATCTTCTC-TCCGGCGAGAATCGCGGT 1253
Query 1254 TCAAATAGCTCGAATTAAGTTCGATCCATCAGATCTCATCGCCGATAAAGAAGAGCTTCC 1313
||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 1254 TCAGATAGCTCGAATCAAGTTCGATCCATCAGATCTCACCGCTGATAAAGAAGATCTTCC 1313
Query 1314 TTGTGATGTGAAGATTCTCACTCTAGAGAACACTGGGAATAACGCTTTTCCGTCTTGCTC 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ATGTGATGTGAAGATTCTCACTCTAGAGAACACTGGGAATAACGCTTTTCCGTCTTGCTC 1373
Query 1374 TCCCGACGGCAAATCAATCGTGTTCCGATCTGGTAGATCTGGGCATAAGAATCTCTACAT 1433
||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1374 TCCGGACGGTAAATCAATCGTGTTCCGATCTGGTAGATCAGGTCATAAAAATCTCTACAT 1433
Query 1434 TGTAGACGCTGTTAACGGAGAATCTAACGGCGGTGGAATAAGACGGTTAACGGAAGGACC 1493
||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 1434 TGTAGACGCCGTTAACGGAGAATCTAACGGCGGTGGAATACGACGGTTAACGGATGGGCC 1493
Query 1494 ATGGATCGATACTATGCCTTGCTGGTCTCCGAAAGGAGATCTCATCGGATTCTCATCTAA 1553
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 ATGGATTGACACTATGCCTTGCTGGTCTCCGAAAGGAGATCTCATCGGATTCTCATCTAA 1553
Query 1554 CCGACACAATCCAGCGAACATCGAGGCGT-T-CGGTGCTTACGTGGTGAGACCTGACGGT 1611
|| || ||||||| ||||| || | ||| | ||||||||||||||||||||||||||||
Sbjct 1554 TCGTCATAATCCAGAGAACA-CG-GCCGTGTTCGGTGCTTACGTGGTGAGACCTGACGGT 1611
Query 1612 ACTGGATTGAGGAGGATTCTAATTTCGGGACCGGAAGGGTCGGAGGAAGCGGCGAGGGAG 1671
||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1612 ACTGGTTTGAGGAGGATTCAAATTTCGGGACCGGAAGGGTCTGAGGAAGCGGCGAGGGAG 1671
Query 1672 AGAGTTAATCATGTGAGTTTCAATAAGGATGGTGATTGG-TTAGTTTTCACGGCGAATCT 1730
|||||||||||||||||||||||||| |||||||||||| || |||||| |||||||| |
Sbjct 1672 AGAGTTAATCATGTGAGTTTCAATAAAGATGGTGATTGGCTT-GTTTTCGCGGCGAATTT 1730
Query 1731 CT-CTGGAATAACGGCGGAGCCGGTGGCGATGCCGAATCAGTTTCAGCCGTATGGAGATT 1789
| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 1731 GAGC-GGAGTAACGGCGGAGCCGGTGACGATGCCGAATCAGTTTCAGCCTTATGGGGATT 1789
Query 1790 TGTACGTTGTGAAATTGGATGGAACGGGATTGAGGAGGCTGACGTGGAATGGGTATGAAG 1849
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 TGTACGTTGTGAAATTAGACGGAACGGGATTGAGGAGGCTGACGTGGAATGGGTATGAAG 1849
Query 1850 ATGGGACTCCCACGTGGCATACTGCTGATGAATTGGATTTGAGTCGGTTGTGTTTGAACG 1909
|||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1850 ATGGGACTCCTACGTGGCATACTGCTGATGAATTGGATTTGAGTCAGTTGAATTTGAACG 1909
Query 1910 GTCAAGATGGAGACAAACTTGATGGTCAGTTTGAGGAGCCGTTGTGGATTTCTTGCGACA 1969
|||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1910 GTCAAGATGGTGACAAGCTTGAAGGTCAGTTTGAGGAGCCGTTGTGGATTTCTTGCGATA 1969
Query 1970 TCTGAATGCGATTT 1983
||||||||||||||
Sbjct 1970 TCTGAATGCGATTT 1983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100150087275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5