BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490399 Length=3221 Score E Sequences producing significant alignments: (Bits) Value AT4G01800.2 | Symbols: AGY1, SECA1 | Albino or Glassy Yellow 1 ... 2780 0.0 > AT4G01800.2 | Symbols: AGY1, SECA1 | Albino or Glassy Yellow 1 | chr4:770838-776260 REVERSE LENGTH=3343 Length=3343 Score = 2780 bits (1505), Expect = 0.0 Identities = 1628/1689 (96%), Gaps = 1/1689 (0%) Strand=Plus/Plus Query 1429 GATGAGTCGGATGTAGTTTTCAAGGCAGTCAATGGTAAATGGCGGGCAGTAGTAGTGGAG 1488 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1615 GATGAGTCAGATGTGGTTTTCAAGGCAGTCAATGGCAAATGGCGGGCAGTAGTAGTGGAG 1674 Query 1489 ATCTCTAGAATGCACAAGACAGGTAGGGCTGTGCTAGTTGGTACAACCAGTGTCGAGCAG 1548 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1675 ATCTCTAGAATGCACAAGACAGGTAGGGCTGTGCTAGTTGGCACAACCAGTGTCGAGCAG 1734 Query 1549 AGTGATGAACTATCGCAACTATTGCGGGAAGCTGGAATACCTCATGAGGTCCTCAATGCC 1608 |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| Sbjct 1735 AGTGATGAACTATCGCAACTGTTGAGGGAAGCTGGAATAACTCATGAGGTCCTCAATGCC 1794 Query 1609 AAACCAGAAAATGTGGAGAGGGAAGCTGAAATTGTAGCACAAAGTGGCCGTTTAGGAGCA 1668 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1795 AAGCCAGAAAATGTGGAGAGGGAAGCTGAAATTGTAGCACAAAGTGGCCGTTTAGGGGCA 1854 Query 1669 GTAACAATTGCCACAAATATGGCAGGGCGTGGGACAGACATAATTCTTGGTGGAAACGCA 1728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1855 GTAACAATTGCCACAAATATGGCAGGGCGTGGGACAGACATAATTCTTGGTGGAAACGCA 1914 Query 1729 GAGTTTATGGCACGTTTGAAGCTCCGTGAGATACTTATGCCCAGAGTGGTAAAGCCTACT 1788 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1915 GAGTTCATGGCACGTTTGAAGCTTCGTGAGATACTTATGCCCAGAGTGGTAAAGCCTACT 1974 Query 1789 GATGGTGTTTTCGTATCTGTGAAGAAGGCCCCTCCCAAGAGAACATGGAAGGTGAACGAG 1848 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1975 GATGGTGTTTTTGTATCTGTGAAGAAGGCCCCTCCCAAGAGAACATGGAAGGTGAATGAG 2034 Query 1849 AAGTTATTTCCATGCAAATTGTCAAATGAGAAAGTAAAGCTAGCTGAAGAAGCTGTACAA 1908 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 2035 AAGTTATTTCCATGCAAACTGTCAAATGAGAAAGCAAAGCTAGCTGAAGAAGCTGTACAA 2094 Query 1909 TCAGCTGTAGAGGCTTGGGGCCAGAAAGCTTTAACTGAGCTTGAAGCAGAGGAACGTCTA 1968 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || Sbjct 2095 TCAGCTGTAGAGGCTTGGGGCCAGAAATCGTTAACTGAGCTTGAAGCAGAGGAACGTTTA 2154 Query 1969 TCTTATTCTTGTGAAAAGGGTCCTGTCCAAGATGAAGTTATAGCTAAACTGAGGACCGGA 2028 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | Sbjct 2155 TCTTATTCTTGTGAAAAGGGTCCTGTCCAAGATGAAGTTATAGGTAAACTGAGGACTGCA 2214 Query 2029 TTTCTGGCGATAGCGAAAGAATATAAGGGCTACACTGATGAAGAAAGGAAGAAGGTTGTG 2088 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2215 TTTCTGGCGATAGCGAAAGAATATAAGGGCTACACTGATGAAGAAAGGAAGAAGGTGGTG 2274 Query 2089 GAAGCTGGTGGACTTCACGTTGTGGGGACAGAGCGGCATGAATCACGCCGAATAGACAAT 2148 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 2275 GAAGCTGGTGGACTTCACGTGGTGGGGACAGAGCGGCATGAATCACGTCGAATAGACAAT 2334 Query 2149 CAGTTGCGTGGGCGAAGTGGTCGGCAGGGGGATCCTGGAAGTTCCCGGTTCTTCCTTAGT 2208 |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct 2335 CAGTTGCGTGGGCGAAGTGGCCGGCAAGGGGATCCTGGAAGTTCCCGATTCTTCCTTAGT 2394 Query 2209 CTTGAAGATAACATATTCCGCATTTTTGGTGGAGATCGGATTCAGGGTATGATGAGAGCA 2268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2395 CTTGAAGATAACATATTCCGCATTTTTGGTGGAGATCGGATTCAGGGTATGATGAGGGCA 2454 Query 2269 TTCAGGGTGGAAGACTTACCGATCGAATCCAAGATGCTTACTAAAGCTCTAGATGAAGCT 2328 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2455 TTCAGGGTGGAAGATTTACCGATCGAATCCAAGATGCTTACTAAAGCTCTAGATGAAGCT 2514 Query 2329 CAGAGAAAAGTTGAGAATTACTTCTTTGACATCAGAAAGCAACTATTCGAATTTGACGAG 2388 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2515 CAGAGAAAAGTTGAGAATTACTTCTTTGACATCAGAAAGCAATTATTCGAATTTGACGAG 2574 Query 2389 GTTCTCAATAGCCAAAGAGATCGTGTTTACACAGAGAGAAGGCGTGCTCTTGTGTCAGAC 2448 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 2575 GTTCTCAATAGCCAAAGAGATCGTGTTTATACAGAGAGAAGGCGTGCTCTTGTGTCGGAC 2634 Query 2449 AGCCTCGAGCCTCTGATTATCGAGTATGCTGAATTGACAATGGATGACATTCTAGAGGCA 2508 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2635 AGCCTTGAGCCTCTGATTATCGAGTATGCTGAATTGACAATGGATGACATTCTAGAGGCA 2694 Query 2509 AATATTGGCCCAGAAACTCCAAAAGAAAGCTGGGATTTTGAAAAGCTCATTGCGAAAGTT 2568 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2695 AATATTGGCCCAGATACTCCAAAGGAAAGCTGGGATTTTGAAAAGCTCATTGCGAAAGTT 2754 Query 2569 CAGCAGTACTGTTACCTGTTGAACGATCTCACTCCAGATTTGCTAAAAAGCCAAGGATCA 2628 ||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| Sbjct 2755 CAGCAGTACTGTTACCTGTTGAACGATCTCACTCCCGATTTGCTGAAAAGCGAAGGATCA 2814 Query 2629 AGTTACGAAGGGTTGCAAGATTATCTACGTGCCCGTGGCCGCGAGGCATACTTACAGAAA 2688 ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 2815 AGTTATGAAGGGTTGCAAGATTATCTCCGTGCCCGTGGCCGCGATGCATACTTACAGAAA 2874 Query 2689 AGAGAAATTGTGGAGAAACAATCACCAGGGCTAATGAAAGATGCTGAACGATTCTTAATC 2748 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2875 AGAGAAATCGTGGAGAAACAATCACCAGGGCTAATGAAAGATGCCGAACGATTCTTAATC 2934 Query 2749 TTGAGCAATATTGACCGGTTATGGAAAGAACACCTTCAAGCGCTCAAGTTTGTGCAACAA 2808 |||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 2935 TTGAGCAATATTGATAGGTTATGGAAAGAACACCTTCAAGCACTCAAGTTCGTGCAACAA 2994 Query 2809 GCTGTGGGGCTTAGAGGATATGCGCAACGCGATCCACTCATCGAGTATAAGCTTGAAGGA 2868 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2995 GCTGTGGGGCTCAGAGGATATGCGCAACGCGATCCACTCATCGAGTATAAGCTCGAAGGA 3054 Query 2869 TACAATCTATTTCTGGAAATGATGGCTCAAATACGAAGAAATGTTATATACTCCATATAT 2928 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3055 TACAATCTATTTCTGGAAATGATGGCTCAAATACGAAGAAATGTGATATACTCCATATAT 3114 Query 2929 CAGTTTCAACCAGTGCGGGTAAAGAAGGACGATGATAAGAAATCTCAGAACGGGAAACCG 2988 |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| Sbjct 3115 CAGTTTCAACCAGTGCGGGTAAAGAAGGACGAAGAGAAGAAGTCTCAGAACGGGAAACCG 3174 Query 2989 AGCAAACAAATGGATAATGTTAGTGAGAAGCCTAAACAAGTCGGTGTCACAGATGAGCCA 3048 ||||||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 3175 AGCAAACAAGTAGATAATGCTAGTGAGAAGCCTAAACAAGTTGGTGTCACAGATGAGCCA 3234 Query 3049 TCCTCAATTGCCAGCGCCTAAGAGCAGTAAACGGTAAAATCTTTTTGGGATACTAGAGCG 3108 ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| Sbjct 3235 TCCTCAATTGCAAGCGCCTAAGAGCGGTAAACGGTAAAATCTTTTTGGG-TACAAGAGCG 3293 Query 3109 GGAATTCGT 3117 ||||||||| Sbjct 3294 GGAATTCGT 3302 Score = 1203 bits (651), Expect = 0.0 Identities = 718/751 (96%), Gaps = 2/751 (0%) Strand=Plus/Plus Query 1 ATGGTGTCTCCACTCTGCGACTCTCAGTTACTTAACCACCGACCCTCGATCTCACCCACA 60 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || Sbjct 130 ATGGTGTCTCCACTCTGCGACTCTCAGTTACTTTACCACCGCCCCTCGATCTCACCTACC 189 Query 61 GCTTCCCAGTTCGTGATCGCTGATGGAATCTTCCTCCGGCAGAATCGTCTTTTGAGCTCT 120 ||||| |||||||||||||| ||||||||| |||||||||| ||||||||| |||||||| Sbjct 190 GCTTCTCAGTTCGTGATCGCGGATGGAATCATCCTCCGGCAAAATCGTCTTCTGAGCTCT 249 Query 121 TCGTCGTTTTGGGGCACCAAATTCGGAAACACCGTGAAGTTGGGAGTATCCGGATGTAGT 180 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 250 TCGTCGTTTTGGGGCACCAAATTCGGAAACACCGTCAAGTTGGGAGTATCTGGATGTAGT 309 Query 181 AGCTGCTCTCGGAGGAGGACCACGAGTGTGAATGCTTCATTAGGTGGTCTTCTCAGCGGG 240 ||||||||||||| ||| | ||||||||||||||||||| ||||||||||||| ||||| Sbjct 310 AGCTGCTCTCGGAAGAGAAGCACGAGTGTGAATGCTTCACTAGGTGGTCTTCTTAGCGGA 369 Query 241 ATTTTCAAGGGTTCTGATAACGGAGAGTCGACGAGGCAACAGTACGCATCAATCGTTGCC 300 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || Sbjct 370 ATTTTCAAGGGTTCTGATAACGGAGAGTCGACTAGGCAACAGTACGCATCCATCGTCGCA 429 Query 301 TCCGTCAATCGCTTGGAGACTGAGATTTCGGCTCTTTCGGATTCAGAGTTGCGAGGA-AG 359 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || || Sbjct 430 TCCGTTAATCGCTTGGAGACTGAGATTTCGGCTCTTTCGGATTCTGAGTTGCGA-GAGAG 488 Query 360 AACTGATGCGTTGAAGCAACGGGCTCAGAAAGGAGAATCCATGGATTCACTTTTACCTGA 419 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 489 GACTGATGCGTTGAAGCAACGTGCTCAGAAAGGAGAATCCATGGATTCACTTTTACCTGA 548 Query 420 AGCATTTGCTGTTGTGAGAGAAGCTTCCAAGAGAGTTCTTGGACTAAGACCTTTTGATGT 479 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 549 AGCATTTGCTGTTGTGAGAGAAGCTTCCAAGAGAGTTCTTGGACTCAGACCTTTCGATGT 608 Query 480 GCAATTAATTGGTGGTATGGTTCTTCATAAAGGAGAAATAGCTGAAATGAGAACTGGTGA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 GCAATTAATTGGTGGTATGGTTCTTCATAAAGGAGAAATAGCTGAAATGAGAACTGGTGA 668 Query 540 AGGGAAAACGCTTGTTGCTATTTTACCTGCTTATTTGAATGCATTAAGTGGGAAAGGTGT 599 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 669 AGGGAAAACGCTTGTTGCTATTTTACCAGCTTATTTGAATGCATTAAGTGGGAAAGGTGT 728 Query 600 TCATGTGGTTACAGTCAATGATTATCTTGCTCGAAGAGATTGTGAATGGGTTGGTCAAGT 659 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 TCATGTGGTTACAGTTAATGATTATCTTGCTCGAAGAGATTGTGAATGGGTTGGTCAAGT 788 Query 660 TCCTCGGTTCCTTGGATTGAAGGTTGGTCTAATCCAACAGAATATGACACCTGAACAAAG 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 TCCTCGGTTCCTTGGATTGAAGGTTGGTCTAATCCAACAGAATATGACACCTGAACAAAG 848 Query 720 AAAGGAAAATTATTTATGCGACATCACTTAT 750 ||||||||||||||||||||| ||||| ||| Sbjct 849 AAAGGAAAATTATTTATGCGATATCACATAT 879 Score = 1050 bits (568), Expect = 0.0 Identities = 608/628 (97%), Gaps = 0/628 (0%) Strand=Plus/Plus Query 802 AGTGTGGAGGAGCTCGTCTTGAGGGATTTCAATTATTGTGTAATTGATGAAGTTGATTCC 861 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 880 AGTGTTGAGGAGCTCGTCTTGAGGGATTTCAATTATTGTGTGATTGATGAAGTTGATTCC 939 Query 862 ATACTTATTGATGAAGCAAGGACTCCTCTCATTATCTCTGGGCCTGCAGAGAAACCTAGT 921 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 940 ATACTTATTGATGAAGCAAGGACTCCTCTCATTATCTCTGGGCCTGCAGAGAAACCTAGT 999 Query 922 GACCAATATTACAAAGCTGCAAAGATTGCTTCAGCCTTTGAGCGGGATATACATTACACT 981 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1000 GACCAATATTACAAAGCTGCAAAGATTGCTTCAGCCTTTGAGCGGGATATACATTACACT 1059 Query 982 GTTGATGAAAAGCAGAAGACTGTTTTACTAACAGAACAGGGTTATGAGGATGCAGAAGAA 1041 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1060 GTTGATGAAAAGCAGAAGACTGTTTTACTGACGGAACAGGGTTATGAGGATGCAGAAGAA 1119 Query 1042 ATCCTGGACGTGAAAGATTTGTATGATCCCCGTGAACAATGGGCATCATATGTTCTTAAT 1101 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1120 ATCCTGGACGTGAAAGATTTGTATGATCCCCGTGAACAGTGGGCATCATATGTTCTTAAT 1179 Query 1102 GCCATTAAGGCAAAAGAACTTTTTCTCAGAGATGTTAACTATATCATCCGGGCAAAGGAG 1161 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1180 GCCATTAAGGCAAAAGAACTTTTTCTCAGAGATGTGAACTATATCATCCGAGCAAAGGAG 1239 Query 1162 GTTCTTATCGTGGATGAGTTTACTGGCCGTGTAATGCAGGGAAGACGTTGGAGTGACGGA 1221 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1240 GTTCTTATCGTGGATGAGTTTACTGGTCGTGTAATGCAGGGAAGACGTTGGAGTGATGGA 1299 Query 1222 CTACATCAAGCAGTTGAAGCAAAAGAAGGCTTGCCTATTCAGAATGAATCCATTACTTTG 1281 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1300 CTACATCAAGCTGTTGAAGCAAAAGAAGGCTTGCCTATTCAGAATGAATCTATTACTCTG 1359 Query 1282 GCATCAATTAGTTATCAAAATTTCTTTTTGCAGTTTCCGAAACTTTGCGGGATGACTGGT 1341 || ||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| Sbjct 1360 GCGTCAATTAGTTATCAAAACTTCTTTCTGCAGTTTCCGAAACTTTGCGGGATGACGGGT 1419 Query 1342 ACTGCATCCACCGAGAGTGCAGAATTTGAGAGCATATACAAGCTCAAAGTTACAATTGTA 1401 || ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1420 ACAGCATCGACCGAGAGTGCAGAATTTGAAAGCATATACAAGCTTAAAGTTACAATTGTA 1479 Query 1402 CCCACAAATAAGCCCATGATAAGAAAGG 1429 |||||||||||||||||||||||||||| Sbjct 1480 CCCACAAATAAGCCCATGATAAGAAAGG 1507 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 160233215942 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5