BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490411
Length=2069
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01660.1 | Symbols: ATABC1, ATATH10, ABC1 | ABC transporter ... 3079 0.0
> AT4G01660.1 | Symbols: ATABC1, ATATH10, ABC1 | ABC transporter
1 | chr4:708544-711256 FORWARD LENGTH=2141
Length=2141
Score = 3079 bits (1667), Expect = 0.0
Identities = 1914/2033 (94%), Gaps = 18/2033 (1%)
Strand=Plus/Plus
Query 48 TTCGTGATGAGTTCGTGGAGCAAGAGCTTTGGTAGGCTCTTCAATGGTGTATCGCTTGTA 107
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 103 TTCGTGATGAGTTCGTGGAGCAAGAGCTTTACCAGGCTCGTCAATGGTGTTTCGCTTGTA 162
Query 108 GCGAAAGAGATCTATAATCAGTCACCGGAGTTACAGAGAGCGAGAAATGGAGATCTCGAA 167
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 163 GCGAAAGAGATCTATAATCAGTCACCGGAGTTACAAAGAGCGAGAAATGGAGATCTCGAA 222
Query 168 GGCTTAATTACGTCTTCAGGGAAAAAAGCTTTGGTTGCTGCCACCGACTTGGTCGGACTT 227
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 223 GGTTTAATAACGTCTTCAGGGAAAAAAGCTTTGGTTGCCGCCACCGACTTAGTCGGACTT 282
Query 228 ACCTCCGGGAAGCTTCGTGAGCTCTCGATTCGTCGATCTAAGGAACCTTCCGTTGTTTAC 287
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 283 ACCTCCGGGAAGCTTCGCGAACTCTCGATTCGTCGATCTAAGGAACCTTCCGTTGTTTAT 342
Query 288 TTCGACGAAGGGGATAATAAAGATACCGTCGTCGTAACGCCTGAGGTTAGATCTGATAGC 347
||||||||||| |||||||| |||| |||||||| |||||||||||||||||||| || |
Sbjct 343 TTCGACGAAGGAGATAATAAGGATAACGTCGTCGCAACGCCTGAGGTTAGATCTGTTAAC 402
Query 348 ACCGAACCTAGCGAGAAAATCGTTGATTCGAGAGACCTGAGAAGCGAATTTAGTGATGAA 407
||| ||||||||||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 403 ACCAAACCTAGCGAGAAAATCGTTGATTCGAAAGTCCTGAGAAATGAATTTAGCGATGAA 462
Query 408 GCTAAGATTTCAAATAGAGAAGAAGAGATTAAGGTTTCAAGCAACGTAGAC-AGCGAGAT 466
| ||||| |||||||||||||| ||||||||||||||| || | || | | |||||
Sbjct 463 GTTAAGAATTCAAATAGAGAAGGTGAGATTAAGGTTTCAGGCGTTGAAG-CGGGAGAGAT 521
Query 467 TATTGGAGTTCGAGCTGCTGAATCAGGTGCGGT----G--GCATCATCTTCGGCGGAGGT 520
|||||||||| |||||| |||||||||| |||| | ||||||||| || |||||||
Sbjct 522 TATTGGAGTTAGAGCTGTTGAATCAGGTACGGTAACGGAAGCATCATCTCCGTCGGAGGT 581
Query 521 AGTAGCTCCGGTGAAGAGACGGAGACCTAGAGAGAGGAAGGTTCCATCAACTCCTATGGC 580
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 582 AGTACCTCCGGTGAAGAGACGGAGACCTAGAGAGAGGAAGGTTCCTTCAACTCCTATGGC 641
Query 581 AAGAGCTTACGGGTTTTTCAATTTAGGAGCTGCTCTTGCTTGGGGAGCTGTTAAAGAATC 640
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 642 AAGAGCTTATGGGTTTTTTAATTTAGGAGCTGCTCTTGCTTGGGGAGCTGTTAAAGAATC 701
Query 641 TACGTATAGGATTGTGAATGGGACACCAATGACAGAAGGCAATCAACCTGCACTATCGTC 700
|||||||||||| || |||||||||||||||||| || |||||| ||||| |||||||
Sbjct 702 TACGTATAGGATGGTAAATGGGACACCAATGACACCAGACAATCAGCCTGCGTTATCGTC 761
Query 701 TTTGATGTCTAAGGAAAATGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGC 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TTTGATGTCTAAGGAAAATGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGC 821
Query 761 TGCTCTTAAAGTTGGGCAAATGTTGAGTATACAGGACGAGAGTCTTGTTCCTGCTCCGAT 820
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 822 TGCTCTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGTTCCTGCTCCGAT 881
Query 821 CTTGAATGCTCTGGAGTATGTGCGTCAAGGTGCTGATGTGATGCCAAGGAGTCAACTTAA 880
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 CTTGAATGCTCTGGAATATGTGCGTCAAGGTGCTGATGTGATGCCAAGGAGTCAACTTAA 941
Query 881 TCCTGTTTTGGATGCTGAGTT-GGGTCCTAATTGGCAATCCAAGTTGACTAGTTTTGATT 939
||| ||||||||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 942 TCCAGTTTTGGATGCTGAGTTAGGTTCC-AATTGGCAATCCAAGTTGACTAGTTTTGATT 1000
Query 940 ATGAACCGCTAGCGGCAGCGAGTATTGGTCAGGTGCACCGAGCTGTCACTAAAGATGGAT 999
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1001 ATGAACCGCTAGCGGCAGCGAGTATTGGTCAGGTGCACAGAGCTGTTACTAAAGATGGAT 1060
Query 1000 TAGAAGTGGCAATGAAGATTCAGTACCCTGGCGTTGCCAACAGCATTGAAAGTGATATCG 1059
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1061 TAGAAGTTGCAATGAAGATTCAGTACCCTGGCGTTGCCAACAGCATTGAAAGTGATATTG 1120
Query 1060 AAAATGTCAGACGCTTGTTAAATTATACAAATCTTATTCCAAAGGGACTCTTTCTGGACA 1119
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1121 AAAATGTCAGACGCTTGTTAAATTATACAAATCTAATTCCAAAGGGACTGTTTCTAGACA 1180
Query 1120 GAGCTATAAAGGTTGCCAAAGAAGAGTTGGCGCAGGAGTGTGACTATGAAATCGAAGCAG 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GAGCTATAAAGGTTGCCAAAGAAGAGTTGGCGCAGGAGTGTGACTATGAAATCGAAGCAG 1240
Query 1180 TCAGTCAAAAGCGCTTTCGTGATTTGCTTTCAGACACTCCAGGGTTTTATGTTCCTCTTG 1239
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1241 TCAGTCAAAAGCGCTTTCGTGATTTGCTTTCAGACACTCCAGGGTTTTATGTGCCGCTTG 1300
Query 1240 TGGTAGATGAGATTTCAAGCAAAAAGATTCTAACCACAGAACTTATATCTGGGATCCCCA 1299
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1301 TGGTAGATGAGACTTCAAGCAAAAAGATTCTAACCACTGAACTTATATCTGGGATCCCCA 1360
Query 1300 TTGATAAAGTAGCCTTGTTAGATCAGAAAACACGAGATTATGTTGGGAGGAAGATGCTAG 1359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TTGATAAAGTAGCGTTGTTAGATCAGAAAACACGAGATTATGTTGGGAGGAAGATGCTAG 1420
Query 1360 AACTCACTCTAAAGGAGCTCTTCATCTTCCGCTTCATGCAGACGGATCCAAACTGGGGTA 1419
|||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1421 AACTCACTTTGAAGGAGCTCTTTGTCTTCCGCTTTATGCAGACGGATCCAAACTGGGGTA 1480
Query 1420 ACTTCTTATACAATGAAGCCACAAAAACAATAAATCTTATTGATTTCGGAGCAGCTCGTG 1479
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1481 ACTTCTTATACAATGAAGCCACAAAGACAATAAATCTTATCGATTTCGGAGCAGCTCGTG 1540
Query 1480 ATTACCCCAAAAAATTCGTCGATGACTATCTACGAATGGTGATGGCATGTGCAGAAAAAG 1539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 ATTACCCCAAGAAATTCGTCGATGACTATCTACGAATGGTGATGGCATGTGCAGAAAAAG 1600
Query 1540 ACAGTGAAGGAGTGATTGAAATGTCAAGGAGACTCGGGTTTTTAACCGGAGATGAATCAG 1599
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1601 ACAGTGAAGGAGTGATTGAAATGTCTAGGAGACTCGGGTTCTTAACCGGAGATGAATCAG 1660
Query 1600 ACGTAATGCTAGACGCTCATGTCCAAGCCGGTTTCATAGTGGGTCTACCTTTTGCAGAAC 1659
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 ATGTAATGCTAGACGCTCATGTCCAAGCCGGTTTCATAGTGGGTCTACCTTTTGCAGAAC 1720
Query 1660 CCGGTGGCTACGCTTTCCGAACCAACAACATTGCTTCTAGTATCTCCAATTTAGGAGCAA 1719
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 CCGGTGGCTATGCTTTCCGAACCAACAACATTGCTTCTAGTATCTCCAATTTAGGAGCAA 1780
Query 1720 CCATGTTGAAACATAGACTCACTCCACCACCCGATGAAGCCTATAGCCTTCACCGTAAAT 1779
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1781 CCATGTTGAAACATAGACTCAGTCCACCACCCGATGAAGCCTATAGCCTTCACCGTAAAT 1840
Query 1780 TATCTGGCGCTTTCTTGGCTTGTATCAAGCTTGGAGCCACCGTCCCTTGCCGTGATCTCT 1839
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1841 TATCCGGCGCTTTCTTGGCTTGTATCAAGCTTGGAGCCACCGTCCCTTGCCGTGATCTAT 1900
Query 1840 TGCTCCAAGTTTACAACAAGTATCAGTTTGATGATGAGCCACAAGGTCCAATAGTAGCGA 1899
|||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |
Sbjct 1901 TGCTCCAAGTTTACAACAAGTATCAGTTCGATGATGAGCCACAAGATCCCGTAGTAGCTA 1960
Query 1900 CAAGCTCTGTTTCTTCAACATAGCTCTCTCATACACACACAATACATTAATGATTTTTTC 1959
||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 1961 CAAGCTCTGTTTCTTCA---TAGCTCCCTCATACACACACACTACATTAATGATTTTTTC 2017
Query 1960 TCTTCCCTTTGTGGGGAGTA-AAAACGATTCTTTCT--GGTACACCTTCGAGTTTAATTT 2016
|| |||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 2018 TCGTCCCCTTGTAGGGAGTATAAAACGATTCTTTCTTTGGTACACCTTCGAGTTTAATTT 2077
Query 2017 AGAATaaaaaaaaTTCAATAATGTAAAATGTTGAATATTACAATGCTGGAGAA 2069
|| |||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 2078 AGTATAATTTT--TTCAATAATGTAAAATGTTAAATATTACAATGCTGGAGAA 2128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102559713435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5