BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490436 Length=3518 Score E Sequences producing significant alignments: (Bits) Value AT4G01400.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3517 0.0 > AT4G01400.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink). | chr4:572997-577276 REVERSE LENGTH=3467 Length=3467 Score = 3517 bits (1904), Expect = 0.0 Identities = 2128/2236 (95%), Gaps = 15/2236 (1%) Strand=Plus/Plus Query 1290 AAAATCATAAAAATGCCGGAGCTTGAACAAGACGTTGCGGCGGCGGAGACGGTGGATTCC 1349 ||||| | ||||||||||||| |||||||||||| ||| ||||||||||||||||||||| Sbjct 1139 AAAAT-AAAAAAATGCCGGAGATTGAACAAGACGATGCAGCGGCGGAGACGGTGGATTCC 1197 Query 1350 TCCACCGTGAAATTTGGTACACCGGAAGCACTTGAGTATGTACGCTCGCTCACGGACGTT 1409 |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1198 TCCACCGTTAAATTCGGTACACCGGAAGCACTGGAGTATGTACGGTCGCTCACGGACGTT 1257 Query 1410 GGCGCGATGACGCGTCTTCTTCACGAATGTATTGCTTACCAGCGAAGCTTAGACTCAGAT 1469 ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1258 GGCGCAATGACACGTCTTCTTCACGAATGTATCGCTTACCAGCGAAGCTTAGACTCAGAT 1317 Query 1470 CTCGACACGCTTCTATCTCAGCGGACGGAGCTTGATCGGAATCTCGTTCAGCTTCAGAGA 1529 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 CTCGACACGCTTCTATCGCAGCGGACGGAGCTTGATCGGAATCTCGTTCAGCTTCAGAGA 1377 Query 1530 TCCGCCGAGATTCTCGATATCGTGAAAGCAGACGCAGATCACATGCTCGGAAATGTTCGA 1589 || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1378 TCGGCGGAGATTCTCGATATCGTGAAAGCAGATGCAGATCACATGCTCGGAAATGTTCGA 1437 Query 1590 TCGACTTGTGATCTCGCGGATCAGGTCAGTGGCAAGGTACGAGAACTCGATCTTGCTCAA 1649 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1438 TCGACTTGTGATCTCGCGGATCAAGTCAGTGGCAAGGTACGAGAGCTCGATCTTGCTCAA 1497 Query 1650 TCTCGTGTTAATGTTACTCTCTCCCGCATTGACGCAATTGTCGAGCGAGGGAATTGCATC 1709 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1498 TCTCGTGTTAATGTTACTCTCTCCCGCATTGACGCGATTGTTGAGCGAGGGAATTGCATC 1557 Query 1710 GAAGGCGTGAAAACTGCTTTGGAATCGGAGGATTATGAATCTGCTGCGAAATTTGTACAG 1769 ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1558 GAAGGCGTGAAGACTGCTTTGGAATCCGAGGATTACGAATCTGCTGCGAAATTTGTACAG 1617 Query 1770 AGATTTCTCCAGATCGATTCGCAGTACAAGGATTCTGGTTCTGACCAGAGAGAACAGCTT 1829 |||||||||||||| |||| ||||||||||||||||||||| || ||||| ||||||||| Sbjct 1618 AGATTTCTCCAGATTGATTTGCAGTACAAGGATTCTGGTTCCGATCAGAGCGAACAGCTT 1677 Query 1830 CTCGCGTCGAAGAAGCAGCTTGAAGGTATTGCGAAGAAGAAGCTCTTAGCGGCAATAGAC 1889 | |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1678 CACGCGTCGAAGGAGCAGCTTGAAGGTATTGCGAAGAAGAAGCTCTTGGCAGCAATAGAC 1737 Query 1890 CAGAGGGATCATCCTACAATTTTGAGATTCGTGAGACTGTATTCTCCATTGGGAATGGAG 1949 ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1738 CAGAGAGATCATCCTACAATTTTGAGATTCGTGAGACTGTATTCCCCACTGGGAATGGA- 1796 Query 1950 GA-AGAAGGTCTACAGCTTTACGTTGGTTACTTGAAAAAGGTCATTGCGATGAGAGGAAG 2008 || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1797 GACAGAAGGTCTACAGCTTTACGTTGGTTACTTGAAAAAGGTCATTGCGTTGAGAGGAAG 1856 Query 2009 GATGGAATATGAAAATGTGGTTGAGCTTATGGAGCAAGGACTCGGACAGGCTAATTTCGT 2068 |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| Sbjct 1857 GATGGAATATGAAAATGTTGTTGAGCTCATGGAGCAAGGACTCGGACAGGTTAATTTCGT 1916 Query 2069 TGGGTGCTTAGCCAATTTGTTTAAGGATATTGTCATGGCTATTGTAGAAAACGATGAGAT 2128 |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1917 TGGGTGCTTAACCAATTTGTTTAAGGATATTGTCATGGCTATTGAAGAAAACGATGAGAT 1976 Query 2129 CTTGAGGGGTCTTTGTGGAGAAGACGGTGTTGTTTATGCGATTTGTGAATTGCAAGAGGA 2188 |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 1977 CTTGAGGGGTCTTTGTGGAGAAGATGGTGTTGCGTATGCGATTTGTGAATTGCAAGAGGA 2036 Query 2189 ATGTGATTCT-AGAGGTTCGTTGATCTTGAAGAAGTACATGGAGTTTAGAAAGTTAGCTA 2247 |||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2037 ATGTGATT-TAAGAGGTTCGTTGATCTTGAAGAAGTACATGGACTTTAGAAAGTTAGCTA 2095 Query 2248 GATTGGCGTCTGATATTAACAATTCTCCGAATCTGAATCTTCTTGCTGGTGGTGCGCCTG 2307 ||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||| ||| Sbjct 2096 TATTGGCGTCTGATATTAACAATTCTCCCAATCTGAATATTCTTCCCGGTGGTGCGTCTG 2155 Query 2308 AAGGACCAGACCCGAGAGAAGTTGAGCTGTATGTGGAAGAGATACTGTCACTGATGCAGA 2367 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2156 AAGGACCAGACCCGAGAGAAGTTGAGCTGTATGTGGAAGAGATACTGTCACTGATGCAG- 2214 Query 2368 TT-GGTGAGGATTATACCGAGTTCGTGGTGTCAAAAATCAAGTCTTTGACGTCGGTAGAT 2426 || |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2215 TTGGGTGAGGACTATACCGAGTTCATGGTGTCAAAAATCAAGTCTTTGACGTCGGTAGAT 2274 Query 2427 CCTGAATTGTTGCCAAGGGCTACAAAGGCATTTAGAAATGGA-AGTTTTTGCAAAGTGAT 2485 |||||||||||||||| |||||||||||||||||||||| | |||||| |||||| ||| Sbjct 2275 CCTGAATTGTTGCCAACGGCTACAAAGGCATTTAGAAAT-AAGAGTTTTAGCAAAGCGAT 2333 Query 2486 TCAGGATGTGACAG-GAT-TCTATGTGATACTAGAAGGGTTCTTTATGGTTGAGAATGTG 2543 |||||||||||| | ||| | ||||| ||||||||||||||||||||||||||||||||| Sbjct 2334 TCAGGATGTGAC-GAGATAT-TATGTTATACTAGAAGGGTTCTTTATGGTTGAGAATGTG 2391 Query 2544 AGGAAAGCTATAAGGATTGATGAGCATGTACCTGACAGCCTTACCACTTCAATGGTGGAC 2603 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2392 AGGAAAGCTATTAGGATCGATGAGCATGTACCTGACAGCCTTACCACTTCAATGGTGGAC 2451 Query 2604 GATGTGTTCTACGTGTTGCAGAGTTGTCTGAGGAGAGCGATTTCAACTTCAAACATCAGT 2663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2452 GATGTGTTCTACGTGTTGCAGAGTTGTCTGAGGAGAGCGATTTCAACTTCAAACATAAGT 2511 Query 2664 TCTGTGATTGCTGTGTTGAGCAATGCTGGTAGCTTGTTGGGCAATGATTACCATGAAGCT 2723 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2512 TCTGTGATTGCTGTGTTGAGCTATGCTGGTAGCTTGTTGGGCAATGATTACCATGAAGCT 2571 Query 2724 CTACAACAGAAGATTAGAGAGCCAAACCTTGGTGCTAGGTTGTTCTTGGGTGGTATCGGT 2783 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 2572 CTACAACAGAAGATTAGAGAGCCTAACCTTGGTGCTAGGTTGTTCTTGGGTGGTATAGGT 2631 Query 2784 GTGGAAAACACCGGAACTGAGATTGCAACTGCTTTGAACAATATGGACGTGAGCTGCGAG 2843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2632 GTGGAAAACACCGGAACTGAGATTGCAACTGCTTTGAACAATATGGACGTGAGCTGCGAG 2691 Query 2844 TACATTATCAAACTAAAA-ATTGAAATCGAGGAGCAATGTACTGAGATGTTTCCTGCACC 2902 |||||| ||||||||||| || |||||||||||||||||||||||| | ||||||||||| Sbjct 2692 TACATTCTCAAACTAAAACAT-GAAATCGAGGAGCAATGTACTGAGGTATTTCCTGCACC 2750 Query 2903 AGCAGATCGAGAGAGGATAAAATCATGTCTATCCGAGTTAGGCGAGTTAAGCAACACGTT 2962 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 2751 AGCAGATCGAGAGAGGATAAAATCATGTCTATCCGAGCTAGGCGAGTTAAGCAGCACGTT 2810 Query 2963 CAAGCAATTACTCAACTCAGGCATGGAACAGCTAGTGGCAACCGTAACACCAAGAATCCG 3022 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2811 CAAGCAGTTACTCAACTCAGGCATGGAACAGCTAGTAGCAACCGTAACACCAAGAATCCG 2870 Query 3023 TCCGGTTCTAGACACTGTAGCTACCATAAGCTACGAGTTAACAGAAACTGAGTACGCAGA 3082 ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| Sbjct 2871 TCCGGTTCTAGACACCGTGGCTACCATAAGCTACGAGTTAACAGAAACCGAGTACGCAGA 2930 Query 3083 GAACGAGGTGAATGACCCGTGGGTCCAAAGACTGCTCCACTCGGTCGAAACAAATGCCGC 3142 ||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| Sbjct 2931 GAATGAGGTGAACGACCCTTGGGTCCAAAGACTTCTCCACTCAGTCGAAACAAATGCCGC 2990 Query 3143 ATGGCTCCAACCACTCATGACATCCAACAACTACGACTCGTTTCTGCATCTCATAATCGA 3202 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 2991 GTGGCTCCAACCACTAATGACATCCAACAACTACGACTCGTTTCTGCATCTCATAATTGA 3050 Query 3203 TTTCATAGTTAAGAGACTCGAAGTCATAATGATGCAGAAACGGTTTAGCCAGCTTGGCGG 3262 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3051 TTTCATAGTTAAGAGACTCGAAGTCATAATGATGCAGAAACGGTTTAGCCAGCTTGGTGG 3110 Query 3263 GCTTCAGCTTGACCGAGACACAAGGGCGTTGGTTAGCCATTTCTCGGGAATGACTCAAAG 3322 |||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 3111 GCTTCAGCTTGATCGAGACACAAGGGCTTTGGTTAGCCATTTCTCGGGTATGACTCAAAG 3170 Query 3323 AACAGTGAGAGATAAGTTTGCTCGGTTAACTCAAATGGCGACGATATTGAACTTGGAAAA 3382 |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| Sbjct 3171 AACAGTGAGAGATAAGTTTGCTCGGTTAACGCAGATGGCGACGATACTGAACTTGGAAAA 3230 Query 3383 GGTCTCAGAGATTTTGGACTTTTGGGGAGAGAACTCAGGACCCATGACTTGGAGACTCAC 3442 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3231 GGTCTCAGAGATTTTGGACTTTTGGGGAGAAAACTCAGGACCCATGACTTGGAGACTCAC 3290 Query 3443 ACCAGCTGAGGTTAGACGGGTTTTGGGTCTCCGAGTCGAGTTTAAACCCGAATCAGTTTC 3502 ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || | Sbjct 3291 ACCAGCTGAGGTTAGACGGGTTTTGGGTCTCCGGGTCGAGTTCAAACCCGAATCAATTGC 3350 Query 3503 TGCTCTCAAGTTGTGA 3518 |||||||||||||||| Sbjct 3351 TGCTCTCAAGTTGTGA 3366 Score = 1075 bits (582), Expect = 0.0 Identities = 750/828 (91%), Gaps = 23/828 (3%) Strand=Plus/Plus Query 1 AACGGCCGATTTATT----AAAAGCTCCGAAC-GATGATTCGCCGGCCGATCTACGACTG 55 ||||||||||||||| |||| ||||| || ||||||||||||||||||||||||| Sbjct 1 AACGGCCGATTTATTAAAAAAAAACTCCG-ACAAATGATTCGCCGGCCGATCTACGACTT 59 Query 56 CTCCGCCGCTGCTCGCCACCTAA-TTACTCCGTTATCGACATTTTCGCGTTTTCT-ATCT 113 | |||||| | ||||||| ||| || ||||||||||||||| ||||||||||| ||| Sbjct 60 CGCCGCCGTTTTTCGCCACTTAACTT-CTCCGTTATCGACATCCTCGCGTTTTCTGTTCT 118 Query 114 GAACACAAAGC-TCGAGAAC-CGAAGGCCTCGGCTTTGGTATCGAATC-CTAGCCCTAAA 170 | | | || |||| ||| | |||| | || | || | | ||||||| Sbjct 119 --ATTC--TTCATC-TGAACATGAA-G-CTCGAAAACCG-ATTG--TCTCGAACCCTAAA 168 Query 171 TCCCCAATCGGGTCTCCGACTCGGGTTCAAAAGCTCATAGCTTCGCAATCGGATCCTCTC 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 169 TCCCCAATCGGGTCTCCGACTCGGGTTCAAAAGCTCATAGCTTCGCAATCGGATCCTCTC 228 Query 231 CTCGCCAAAGAGATTTTCGATTACGCTTCTCAACAGCCCAATTTCCGCCATTCTCAATCT 290 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 229 CTCGCCAAGGAGATTTTCGATTATGCTTCTCAACAGCCCAATTTCCGCCATTCTCGATCT 288 Query 291 TCTCATCTCATCCTCATTCTCAAACTCGGCCGTGCTAGATATTTCAATCTCATCGACGAC 350 |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 289 TCTCATCTAATCCTCATTCTCAAACTCGGCCGTGGTAGATATTTCAATCTTATCGACGAC 348 Query 351 GTTCTCGCCAAGCACAGATCAAGTCGTTATCCGGTAACCGGAGAAATATTCACATATCTG 410 ||||||||||| |||||||||||| ||||||| ||||||||||||| ||||| |||||| Sbjct 349 GTTCTCGCCAAACACAGATCAAGTGGTTATCCATTAACCGGAGAAATTTTCACTTATCTG 408 Query 411 ATCAAAGTCTACGCAGAGGCAAAGATACCGGAGAAAGTTTTAAGAACGTTTTACAAAATG 470 ||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||| Sbjct 409 ATCAAAGTCTACGCAGAAGCAAAGTTACCGGAGAAAGTCTTAAGTACGTTTTACAAAATG 468 Query 471 CTGGAGTTCAATTTCACGCCGCAGCCAAAACATCTGAATCGGATTCTAGATGTTCTTGTA 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 469 CTGGAGTTCAATTTCACGCCGCAGCCAAAACATCTGAATCGGATTCTAGATGTTCTCGTA 528 Query 531 AGCCATAGAGGTTATCTCCAGAAAGCTTTTGAGCTTTTCAAGAGTTCACGGCTTCACGGA 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 529 AGCCATAGAGGTTATCTCCAGAAAGCTTTTGAGCTTTTCAAGAGTTCACGGCTTCATGGA 588 Query 591 GTAATGCCTAACACGAGAAGCTACAATATATTGATGCAAGCTTTTTGTTTGAATGATGAT 650 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 589 GTAATGCCTAACACGAGAAGTTACAATTTATTGATGCAAGCTTTTTGTTTGAATGATGAT 648 Query 651 TTGAGTATTGCATACCAATTGTTTGGTAAAATGCTTGAGAGAGATGTTGTCCCTGATGTG 710 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 649 TTGAGTATTGCATACCAACTGTTTGGTAAAATGCTTGAGAGAGATGTTGTCCCTGATGTG 708 Query 711 GAGTCTTATAAGATTCTGATAAAAGGGTTTTGTAGGAAAGGGCAAGTGAATGGTGCTATG 770 || |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 709 GATTCTTATAAGATTCTGATACAAGGGTTTTGTAGGAAAGGTCAAGTGAATGGTGCTATG 768 Query 771 GAATTACTGGAAGATATGTTGAATAAAGGATTTGTTCCCGATAG-ACT 817 |||||||| || |||||||||||||||||||| || || ||||| ||| Sbjct 769 GAATTACTTGATGATATGTTGAATAAAGGATTCGTGCCTGATAGGACT 816 Score = 481 bits (260), Expect = 2e-134 Identities = 304/326 (93%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 917 GACATTGATTGGAGGATTGTGTGATCAAGGAATGTTTGATGAAGGGAAGAAGTATCTACA 976 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 813 GACTTTGATTGGAGGATTGTGTGATCAAGGAATGTTTGATGAAGGGAAGAAGTATCTAGA 872 Query 977 AGAGATGATATCGAAGGGGTTTTCTCCTCATTTCTCGATTTCGAATTGTTTGGTAAAAGG 1036 |||||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 873 AGAGATGATATCCAAAGGGTTTTCTCCTCATTTCTCGGTTTCAAATTGTTTGGTAAAAGG 932 Query 1037 GTTTTGCAGCTTCGGGAAAGTCGAAGAAGCGTGTGATGTGGTAGAGTTTGTGATGAAGAA 1096 |||||| ||||||||||||||||||||||| |||||||| |||||| ||||||||||||| Sbjct 933 GTTTTGTAGCTTCGGGAAAGTCGAAGAAGCTTGTGATGTTGTAGAGGTTGTGATGAAGAA 992 Query 1097 CGGAGAAATATTACATTCAGACACGTGGGAGATGATAATTCCATTGATCTGTAAAGAAGA 1156 |||||||| ||| ||||||||||| ||||||||| |||||||||| |||||||| ||||| Sbjct 993 CGGAGAAACATTGCATTCAGACACTTGGGAGATGGTAATTCCATTAATCTGTAATGAAGA 1052 Query 1157 TGAGACGGAGAAGATCAAACGGTTTCTTGAAGATGCTTTAAAGGAAGAGATAACCGGTGA 1216 |||| ||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| Sbjct 1053 TGAGTCGGAGAAGATCAAACTGTTTCTTGAAGATGCTGTAAAGGAAGAAATAACCGGTGA 1112 Query 1217 TACCAGAATTGTCGATGTCGGTATCG 1242 ||||||||| || ||||||||||||| Sbjct 1113 TACCAGAATCGTTGATGTCGGTATCG 1138 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 175132798013 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5