BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490441
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01310.1 | Symbols: | Ribosomal L5P family protein | chr4:5... 1356 0.0
> AT4G01310.1 | Symbols: | Ribosomal L5P family protein | chr4:543970-545547
REVERSE LENGTH=1052
Length=1052
Score = 1356 bits (734), Expect = 0.0
Identities = 840/890 (94%), Gaps = 11/890 (1%)
Strand=Plus/Plus
Query 1 GAACGCCGAGAGCTCTCTCACTTCTCCTGCAACTTTATCCACTTTGGAGCTTCGACAATG 60
|||||||||||| ||||||| | | | | ||||||||||| |||||||||||||||||
Sbjct 19 GAACGCCGAGAG--CTCTCAC-T-T-C-AC-ACTTTATCCAC-TTGGAGCTTCGACAATG 70
Query 61 GCGTCTCCTTCGCTTCTGCAGTCTTCTGCTTCTTCATTTCACGGACGTTTTTCTCCTTTA 120
|||||||||||||||||||||||||| |||||||| |||||||||||||| || || |||
Sbjct 71 GCGTCTCCTTCGCTTCTGCAGTCTTCCGCTTCTTCGTTTCACGGACGTTTCTCACCATTA 130
Query 121 GCGGCTCCATCCTCCGCACGGATGCTATCTCCGCCGCTCAGAAACTTGGTGAAAGTCTCG 180
|||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 131 GCGGCTCCATCCTCCGCACGAATGCTCTCTCCGCCGCTCAGAAACGTGGTGAAAGTCTCG 190
Query 181 GCCTCTGGAACAGTGCTGGTTGAGAAATCTGAGGCCGAGAAAACTCAGCGGCTCAAAACC 240
|| |||||||| || ||||| ||||||||||| |||||||||||||| || |||||||||
Sbjct 191 GCGTCTGGAACTGTACTGGTCGAGAAATCTGAAGCCGAGAAAACTCAACGCCTCAAAACC 250
Query 241 GCTTACCTGGAGAGGATTATCCCTGCGCTCAAAGATGAGTTCAAGTACGTTAATATTCAC 300
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 251 GCTTACCTCGAGAGGATTATCCCTGCGCTCAAAGAAGAGTTCAAGTACGTTAATATTCAC 310
Query 301 CAGGTTCCAAAGGTACAGAAGATTGTAGTGAATTGTGGTATTGGAGATGCAGCGCAGAAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 311 CAGGTTCCAAAGGTACAGAAGATTGTAGTGAATTGTGGTATTGGAGATGCGGCGCAGAAC 370
Query 361 GACAAGGGTTTGGAGGCTGCAATGAAGGATATCGCGCTTATTACAGGGCAGAAACCTATT 420
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 371 GACAAGGGTTTGGAGGCTGCGATGAAGGATATCGCGCTTATCACAGGGCAGAAACCTATT 430
Query 421 AAGACACGAGCTAGAGCTTCCATTGCTACTTTCAAGATCAGGGAAGATCAACCTCTTGGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AAGACACGAGCTAGAGCTTCCATTGCTACTTTCAAGATCAGGGAAGATCAACCTCTTGGG 490
Query 481 ATTGCTGTCACTCTCAGAGGAGACGTAATGTACTCCTTCTTGGATCGTCTTATCAACTTA 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 491 ATTGCTGTCACTCTCAGAGGAGATGTAATGTACTCCTTCTTGGATCGTCTTATCAACTTA 550
Query 541 GCGCTTCCGAGAACTCGAGATTTCCAAGGCGTGAGCCCCAGTAGCTTTGATGGGAATGGA 600
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 551 GCCCTTCCGAGAACTCGAGATTTCCAAGGTGTGAGTCCCAGTAGCTTTGATGGGAACGGA 610
Query 601 AACTACAGTATTGGTGTGAAAGACCAAGGTGTATTCCCTGAGATCAGGTTTGATGCTGTT 660
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 611 AACTACAGTATTGGTGTGAAAGACCAAGGTGTATTCCCTGAAATCAGGTTTGATGCCGTT 670
Query 661 GGAAAAACGAGAGGAATGGATGTATGCATCAGCACAACGGCAAAAACCGATCAAGAAGGG 720
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 671 GGAAAAACGAGAGGAATGGATGTATGCATCAGCACAACGGCTAAAAGCGATCAAGAAGGA 730
Query 721 CAGAAACTATTGGCTCTAATGGGAATGCCTTTCAGGGAAGGAGGTGGTGGCAACACAGGC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 731 CAGAAACTATTGGCTCTAATGGGAATGCCTTTCAGGGAAGGAGGTGGTGGCAGCACAGGC 790
Query 781 GCAATAGTGCGGAAGAAGAAACTAAAGTCTCATCATTTTGATGCTAAAGGAAAAGGAAAG 840
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 791 GCGATAGTGCGGAAGAAGAAACTAAAGTCTCATCACTTTGATGCTAAAGGAAAAGGAAAG 850
Query 841 ACAAAGAGATGAACATAGCTGCCTATTATATGTATTGTCTTCTGTAACCA 890
| | || |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 851 AGAT-GA--TGAACATAGCTGCCTATTGTATGTATCGTCTTCTGTAACCA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43452537155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5