BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490462
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01080.1 | Symbols: TBL26 | TRICHOME BIREFRINGENCE-LIKE 26 |... 2143 0.0
> AT4G01080.1 | Symbols: TBL26 | TRICHOME BIREFRINGENCE-LIKE 26
| chr4:466391-468294 REVERSE LENGTH=1583
Length=1583
Score = 2143 bits (1160), Expect = 0.0
Identities = 1325/1403 (94%), Gaps = 18/1403 (1%)
Strand=Plus/Plus
Query 1 CACTGTTCTCTCTTCTTCAATGGAACAACAATTAACATTCGTATTGCTTGATAGCCCAGA 60
|||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 1 CACTGTGCTCTCTTCTTCAATGGAACAACAATTAACCTTAGTATTGCTTGATAGCCCAAA 60
Query 61 AGGCGCGAAATATGTAGAAGAAACC-CT--AGAAGTCG---cttcttcttcttcttcttc 114
|||||| |||||||| ||||||| | ||||| || |||||||||||||||||||
Sbjct 61 AGGCGCCAAATATGT---AGAAACCTTTGAAGAAGCCGCTTCTTCTTCTTCTTCTTCTTC 117
Query 115 ttcttcttctGTTCCCTCCTCCACTGATCACCGCCATCGAACCTTCGTCAAATTCTTCGT 174
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 118 TTCTTCTTCTGTTCCCTCCTGCACTGATCACCGCCATCGAACCTTCGTCAAATTCTTCCT 177
Query 175 TTACTTCTCTCTCGTCGCTCTCGCTTACTATTTCATCATCTCCAGTTTCGCCGTCTCTCC 234
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 178 TTACTTCTCTCTCGTCGCTCTTGCTTACTATTTCATCATCTCCAGTCTCGCCGTCTCTCC 237
Query 235 AATTTCCCCAACGTTGCCGCAGCAATCTTCTTCCGGAAACGTTTCATCAGCAAAGTGTGA 294
|||| ||||||| ||| | | |||||||||| ||||||||||||||||||||||||||||
Sbjct 238 AATTCCCCCAACATTG-C-C-GCAATCTTCTCCCGGAAACGTTTCATCAGCAAAGTGTGA 294
Query 295 TCTTTTCACCGGAGATTGGGTTCCGGATCCAACAGGTCCTCTGTACACAAATGTCTCTTG 354
||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||
Sbjct 295 TCTTTTCACCGGAGATTGGATACCAGATCCAACAGGTCCTCTGTACACAAATGTCACTTG 354
Query 355 TCATCACATTCAAGATTTTCAGAACTGTCTATTGAATGGACGGCCAGATGTGAATTACCT 414
|| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 355 TCGTCACATTCAAGATTTTCAGAACTGCCTATTGAATGGACGACCAGATGTGAATTATCT 414
Query 415 CTTCTGGAGATGGAAGCCTCGTGATTGTGATCTTCCTAGGTTTAGTCCATCGCAGTTTCT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CTTCTGGAGATGGAAGCCTCGTGATTGTGATCTTCCTAGGTTTAGTCCATCGCAGTTTCT 474
Query 475 TGATTCAGTGAAGAACAAATGGTGGGCTTTTATCGGTGATTCCATAGCTCGTAACCATGT 534
|| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 475 TGCTTCAGTGAAGAACAAATGGTGGGCTTTTATCGGTGATTCCATTGCTCGTAATCATGT 534
Query 535 CCAGTCTCTCATCTGCATTCTCTCTCAGGTGGAAGAAGTGGAGGAAATCTATCACGATAA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCAGTCTCTCATCTGCATTCTCTCTCAGGTGGAAGAAGTGGAGGAAATCTATCACGATAA 594
Query 595 GGAGTTCAGATCCAAGATATGGAGATTCCCTTCTCACAACTTCACACTTTCTGTCATTTG 654
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 595 GGAGTTCAGATCCAAGATATGGAGATTCCCTTCTCACAACTTCACACTATCAGTCATTTG 654
Query 655 GTCTCCTTTCCTTCTCAAATCCGAAACATCTAGCGACTCGGATATCCAGCTTTACCTTGA 714
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 655 GTCTCCTTTCCTTCTCAAATCCGAAACATCTAGCAACTCGGATATTCAGCTTTACCTCGA 714
Query 715 TCAGCTCGACCACAAATGGACCGTCCAATACTCGAAATTCGACTACGTTGTTATCTCTGG 774
||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 715 CCAGCTTGACCACAAATGGACTGTCCAATACCCGAAATTCGACTACGTTGTTATCTCTGG 774
Query 775 AGGCAAATGGTTTCTTAAAACCACAATATTTC-ATGAAAACAACGCAGTCACAGGCTGTC 833
||||||||||||||||||||| ||||| |||| |||||||||||| |||||| |||||||
Sbjct 775 AGGCAAATGGTTTCTTAAAACAACAAT-TTTCCATGAAAACAACGTAGTCACGGGCTGTC 833
Query 834 ATTACTGCCAAGGAAGAAACAACCTAACTGATCTCGGCTACGATTACTCCTACCGCAAAA 893
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 834 ATTACTGCCAAGGAAGAAACAACCTAACTGATCTCGGCTATGATTACTCCTACCGCAAAA 893
Query 894 CCCTTAACCTTCTCCGTGACTTCGTCCTAAACTCAAACCACAAACCGCTGGTTCTGTTCC 953
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 894 CCCTAAACCTTCTCCGTGACTTCGTCCTAAACTCAACCCACAAACCGCTGGTTCTGTTTC 953
Query 954 GAACTACAACACCTGACCATTTTGAAAATGGAGAGTGGAACACTGGTGGGTATTGCAACA 1013
|||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 954 GAACAACAACGCCTGACCATTTCGAAAACGGAGAGTGGAACACTGGTGGGTATTGCAACA 1013
Query 1014 GAACGATGCCGTTTAAAGAAG-CTCAGGCAAAAATGAAAACCGTTGATGATGTGATGCGT 1072
||||||||||||||||||||| | || ||||| |||||||| || |||||||||||||||
Sbjct 1014 GAACGATGCCGTTTAAAGAAGGC-CAAGCAAATATGAAAACTGTAGATGATGTGATGCGT 1072
Query 1073 GATGTTGAGCTTGAGGTGTTTCAGAAATTCGGGAAAGGTTTCGGTTTAGGTTCCAACATC 1132
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1073 GATGTTGAGCTTGAGGTGTTTCAGAAATTTGGGAAAGGTTTTGGCTTAGGTTCCAACATC 1132
Query 1133 AGACTATTAGACACGACTGGAATGTCTCTTCTCCGTCCAGACGGGCATCCGGGACCGTAC 1192
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1133 AGGCTATTAGACACGACTGGAATGTCTCTTCTCCGTCCAGACGGGCATCCGGGACCATAC 1192
Query 1193 CGGCATCCAAATCCTTTTGCTGGAGTTAAGAATAAGAGCCATGTTCAGAATGATTGTCTG 1252
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1193 CGGCATCCAAATCCTTTTGCTGGAGTTAAGAATAAGAGCAATGTTCAGAATGATTGTCTG 1252
Query 1253 CATTGGTGCTTACCTGGTCCAATTGATTCATGGAATGATGTGATGGTCGAAACCACGCTT 1312
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1253 CATTGGTGCTTACCTGGTCCAATTGATTCATGGAATGATGTGATGGTGGAAACCACGCTT 1312
Query 1313 AACAGGGAACGGGAACTATACGATTTAACCGGTTAAGGTACCACGATGTTGCTTGTAGCT 1372
||| |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 1313 AACCGGGAACGGGAACTATACGATTTAACCGGTTAATGTACCACGATATCGCTTGTAGCT 1372
Query 1373 AGTTACAGTCTATATAGCCATTC 1395
|||||||||| | ||||||||||
Sbjct 1373 AGTTACAGTC-A-ATAGCCATTC 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5