BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490469
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01000.1 | Symbols: | Ubiquitin-like superfamily protein | ... 1845 0.0
AT3G06455.1 | Symbols: | ubiquitin family protein | chr3:19805... 448 9e-125
> AT4G01000.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:431963-433849 REVERSE LENGTH=1593
Length=1593
Score = 1845 bits (999), Expect = 0.0
Identities = 1272/1396 (91%), Gaps = 49/1396 (4%)
Strand=Plus/Plus
Query 1 CAAGCAGTgagagagagagaCAC---TTATTAGGGCTCCGTCAATTTTCCCCAATTTCCT 57
||||||| |||||||||||| || |||||||||||||||||| |||||||||||| ||
Sbjct 1 CAAGCAGCGAGAGAGAGAGAGACTTATTATTAGGGCTCCGTCAAATTTCCCCAATTT-CT 59
Query 58 CTCTGATTCCTCTCCAGAAAtcttcttcttcttcttcttcGTCCAAGCTTCCTTTAGAAT 117
|||||||||||||| ||||||| ||||||||||||||||||||| | ||| ||||
Sbjct 60 CTCTGATTCCTCTCTAGAAATC--GAACTTCTTCTTCTTCGTCCAAGC-T--TTT-GAAT 113
Query 118 CG-AAATCGATGGCGGATCAGAGCTCTAAGCCGTTGCAGTTTTTCGTTAGACTACTCGAC 176
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 114 CGAAAATCGATGGCGGATCAGAGTTCTAAGCCGTTGCAGTTTTTCGTGAGACTACTCGAC 173
Query 177 GGTAAATCATTAACCCTAAGTTTCTCCTCTCCATTAGCTTATGGCGAGCAGATCAAGCAG 236
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 174 GGAAAATCATTAACCCTAAGTTTCTCCTCTCCGTTAGCTTATGGCGAGCAGATCAAGCAG 233
Query 237 CGGATCTTCGAGCAAACGAAGATTCCGACGCATCTACAGCGATTGATAAGCGGAGGATAT 296
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 234 CGGATCTTCGAGCAAACGAAGATCCCGACGCATCTACAGAGATTGATAAGCGGAGGATAC 293
Query 297 CAAATCTCCGACGGATCCGCGATTTCTCAGCCTGACGCCACCGTGAATCTTGTCCTTTCC 356
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CAAATCTCCGATGGATCCGCGATTTCTCAGCCTGACGCCACCGTGAATCTTGTCCTTTCA 353
Query 357 CTGCGTGGAGGTAAAGGTGGATTCGGATCGTTACTTCGTGGTGCGGGTACGAAAGCTGGG 416
|| |||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 354 CTCCGTGGAGGTAAAGGAGGATTCGGATCGTTACTTCGTGGTGGGGGTATGAAAGCTGGG 413
Query 417 CAGAAGAAGACAAACAACTTCGATGCGTGTAGGGATATGAGTGGACGGAGATTGAGGCAT 476
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 414 CAGAAGAAGACGAACAACTTCGATGCTTGTAGGGATATGAGTGGACGGAGATTGAGGCAT 473
Query 477 GTAAACGCCGAGAATAGGCTTCAGGAGTGGAAGGAAGGTGAAGAAGAGAGGAAGCTTGAG 536
|||||||| |||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 474 GTAAACGCAGAGAATAGGCTTCAGGAGTGGAAGGATGGTGAAGAAGGGAGGAACCTTGAG 533
Query 537 AAATCGGCTCTTGAGTTTCTCAAGAAGCAAGCCAATAAAGTGAAACAAGGTGTTGGGAAT 596
||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 534 AAAAAGGCTCTTGAGTATCTGAAGAAGCAATCCAATAAAGTGAAACAAGGTGTTGGAAAT 593
Query 597 GGAGCTACGCAGAAGTATGTTAACAAGTATAAGGAAGAATCTGATAAGTGTATTTTGGCT 656
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 594 GGAGCTACGCAGAAGTATGTTAATAAGTATAAGGAAGAATCTGATAAGTGTATTTTGGCT 653
Query 657 GTTGATTTGGCTTTGAACGAATCTTTCAAGAATGGGAAGAGAAAAGGGAAGATTGGTGCT 716
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 654 GTTGATTTGGCTTTGAATGAATCTTTCAAGAATGGGAAGAGAAAAGCGAAGATTGGTGCT 713
Query 717 GACTCTGAAAAGAAGAAGCGACTCAAGATATGGAAGGGGAAGAGAGCTGTTGAAGATAGT 776
|| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 714 GAATCTGAGAAGAAGAAGCGTCTCAAAATATGGAAGGGGAAGAGAGCTGTTGAAGATAGT 773
Query 777 GACAGTGATGATAGC-AGCGACGAAGAAGATGAGAAATCTGTTGTTATGAACAATGGTGG 835
||||||||||||||| | |||||| ||||||||||||||||||||| | |||||||||||
Sbjct 774 GACAGTGATGATAGCGA-CGACGAGGAAGATGAGAAATCTGTTGTTCTAAACAATGGTGG 832
Query 836 ACATGATGGTGATTCTTCTGGTAAATCT-CTATGCAATAGCGGTTCGGAGGAAGAGAACG 894
|||||||||||||| |||||||||||| | ||||||||| ||||| |||||||||||||
Sbjct 833 TCATGATGGTGATTCATCTGGTAAATCTTC-ATGCAATAGTGGTTCAGAGGAAGAGAACG 891
Query 895 ACGGTCTAGTGCACCACCGAAGATTAGATGTGGTTA---------TCACCGGTGTTCAAG 945
||| | || |||||| | | | || |||||||||| |||||||||||||||
Sbjct 892 ACGCTGTAATGCACCGC--A-GTTTCGATGTGGTTAAGGAAGAGATCACCGGTGTTCAAG 948
Query 946 GGATTAACGAAGAGAAGATGGATGATTTACCTGTTGCTGTTGCTGTTGCTGATGC-AAT- 1003
|||||| |||||| ||||| |||||||||||||| |||||||||||| |||||| |||
Sbjct 949 GGATTATTGAAGAGGAGATGAATGATTTACCTGTTTCTGTTGCTGTTGATGATGCTAATA 1008
Query 1004 --G--G---ATCA--T----C--CT-GAAATTGTGGAGAAATCAAGTGGAGACGCAGGGA 1047
| | || | | | || |||| ||||||||||||||||||||||||||||
Sbjct 1009 CTGTTGCTGATGAAATGGATCAACTTGAAAAGGTGGAGAAATCAAGTGGAGACGCAGGGA 1068
Query 1048 AGAATCTGGTCGATGTAGCTTGTGAAACGTTAATTACGTCTGCAGCTGTTAAGAGAGGAG 1107
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1069 AGAATCTGGTTGATGTAGCTTGTGAAACGTTAATTACGTCTGCAGCTGTTAAGAGAGAAG 1128
Query 1108 GAACTGCGAAAGAAACAGTGTCTGTTGATGCAGTTTGTTGCAAACCTGTTGGACCGCTTA 1167
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct 1129 GAACTGCGAAAGAAACAGTGTCTGTTGATGCAGTATGTTGCAAACCTGTTGAACCACTTA 1188
Query 1168 ACTTTGACGACTTCAATTCAGCTA-CAGATATGGAGGTTTTGGGGATGGAGAGATTGAAG 1226
||||||| |||||||||||| | | |||| ||||||||||||||||||||||||||||||
Sbjct 1189 ACTTTGATGACTTCAATTCACC-AGCAGACATGGAGGTTTTGGGGATGGAGAGATTGAAG 1247
Query 1227 ACTGAGCTTCAGTCACGTGGTCTGAAATGCGGAGGGACATTGCAAGAGCGGGCTGCGAGA 1286
|||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 1248 ACTGAGCTTCAGTCACGTGGTCTGAAGTGCGGAGGGACATTGCGAGAGCGAGCTGCGAGG 1307
Query 1287 CTATTTTTACTTAAATCAACACCACTCGATAAGCTCCCAAAGAAATTGCTGGCCAAGAAA 1346
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1308 CTATTTTTACTTAAATCAACGCCACTCGATAAGCTCCCAAAGAAATTACTGGCCAAGAAA 1367
Query 1347 TGA-AGAACAACATCC 1361
||| ||| ||||||||
Sbjct 1368 TGACAGA-CAACATCC 1382
> AT3G06455.1 | Symbols: | ubiquitin family protein | chr3:1980542-1982162
FORWARD LENGTH=1488
Length=1488
Score = 448 bits (242), Expect = 9e-125
Identities = 326/365 (89%), Gaps = 11/365 (3%)
Strand=Plus/Plus
Query 86 ttcttcttcttcGTCCAAGCTTCCTTTAGAATCG-AAATCGATGGCGGATCAGAGCTCTA 144
||||||||||||||||||| ||||||||||| ||||||||||||||||| || | ||
Sbjct 307 TTCTTCTTCTTCGTCCAAG----CTTTAGAATCGAAAATCGATGGCGGATCAAAGTTGTA 362
Query 145 AGCCGTTGCAGTTTTTCGTTAGACTACTCGACGGTAAATCATTAACCCTAA-GTTTCTCC 203
||||||||||||||||||| |||||||||||||| |||||| ||||||||| ||| |||
Sbjct 363 AGCCGTTGCAGTTTTTCGTGAGACTACTCGACGGAAAATCAGTAACCCTAACCTTT-TCC 421
Query 204 TCTCC-ATTAGCTTATGGCGAGCAGATCAAGCAGCGGATCTTCGAGCAAACGAAGATTCC 262
||||| | |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCTCCGA-TAGCGTGTGGCGAGCAGATCAAGCAGCGGATCTTCGAGCAAACGAAGATTCC 480
Query 263 GACGCATCTACAGCGATTGATAAGCGGAGGATATC-AAATCTCCGACGGATCCGCGATTT 321
||||||||||||| |||||||||||||||||| || ||||| ||| || |||||||||||
Sbjct 481 GACGCATCTACAGAGATTGATAAGCGGAGGAT-TCCAAATCCCCGGCGCATCCGCGATTT 539
Query 322 CTCAGCCTGACGCCACCGTGAATCTTGTCCTTTCCCTGCGTGGAGGTAAAGGTGGATTCG 381
||||| ||||| ||||| ||||||||||||| ||||| |||||||| ||||||||| |||
Sbjct 540 CTCAGTCTGACACCACCATGAATCTTGTCCTGTCCCTCCGTGGAGGCAAAGGTGGACTCG 599
Query 382 GATCGTTACTTCGTGGTGCGGGTACGAAAGCTGGGCAGAAGAAGACAAACAACTTCGATG 441
|||||||||||||| || || || ||||||||| ||||||||||||||||| ||||||
Sbjct 600 GATCGTTACTTCGTAATGTGGTTATGAAAGCTGGACAGAAGAAGACAAACAATTTCGATT 659
Query 442 CGTGT 446
|||||
Sbjct 660 CGTGT 664
Score = 313 bits (169), Expect = 3e-84
Identities = 206/224 (92%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 1139 AGTTTGTTGCAAACCTGTTGGACCGCTTAACTTTGAC-GACTTCAATTCAGCTACAGATA 1197
||| |||||||||||||||| |||||||||||||| | || ||||| |||| |||||||
Sbjct 1171 AGTGTGTTGCAAACCTGTTGAACCGCTTAACTTTG-CTGAGTTCAAAGCAGCCACAGATA 1229
Query 1198 TGGAGGTTTTGGGGATGGAGAGATTGAAGACTGAGCTTCAGTCACGTGGTCTGAAATGCG 1257
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1230 TGGAGGTTTTGGGGATGGAGAGATTGAAGACTGAGCTTCAGTCACGCGGTCTGAAATGCA 1289
Query 1258 GAGGGACATTGCAAGAGCGGGCTGCGAGACTATTTTTACTTAAATCAACACCACTCGATA 1317
|||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct 1290 GAGGGACATTGCGAGAGCGAGCTGCGAGGCTATTTTTACTTAAATCAACGCCCCTCGATA 1349
Query 1318 AGCTCCCAAAGAAATTGCTGGCCAAGAAATGAAGAACAACATCC 1361
||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 1350 AGCTCCCGAAGAAATTACTGGCCAAGAAATGAAGACCAACATCC 1393
Score = 267 bits (144), Expect = 3e-70
Identities = 216/248 (87%), Gaps = 15/248 (6%)
Strand=Plus/Plus
Query 586 GTGTTGGGA-ATGGAGCTACGCAGAAGTATGTTAACAAGTATAAGGAAGAATCTGATAAG 644
||||| ||| ||||||||||||||||| |||| ||||||||||||| | ||||||||||
Sbjct 663 GTGTT-GGAGATGGAGCTACGCAGAAGAATGTCAACAAGTATAAGGGGGGATCTGATAAG 721
Query 645 TGTATTTTGGCTGTTG-ATTTGGCTTTGAACGAATCTTTCAAGAATGGG---AAGAGAAA 700
||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 722 TGTATTTTGGCTG-TGCATTTGGCTTTGAACGAAACTTTCAAGAATGGGAATAAGAGAAA 780
Query 701 A-GG--GAAGATTGG---TGCTGACTCTGAAAAGA-AGAAGCGACTCAAGATATGGAAGG 753
| || |||||| || ||| || |||||||| | ||| ||| |||| |||||||| |
Sbjct 781 AGGGAAGAAGATGGGTACTGCAGAATCTGAAAA-ATCGAAACGAATCAAAATATGGAATG 839
Query 754 GGAAGAGAGCTGTTGAAGATAGTGACAGTGATGATAGCAGCGACGAAGAAGATGAGAAAT 813
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 840 GAAAGAGAGCTGTTGAAGATAGTGACAGTGATGATAGCAGTGACGAGGAAGATGAGAAAT 899
Query 814 CTGTTGTT 821
||||||||
Sbjct 900 CTGTTGTT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5