BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490470
Length=2557
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00990.1 | Symbols: | Transcription factor jumonji (jmjC) d... 3716 0.0
> AT4G00990.1 | Symbols: | Transcription factor jumonji (jmjC)
domain-containing protein | chr4:426944-431821 FORWARD LENGTH=2804
Length=2804
Score = 3716 bits (2012), Expect = 0.0
Identities = 2390/2570 (93%), Gaps = 36/2570 (1%)
Strand=Plus/Plus
Query 1 TTTGTCTCCGAGTATGGAGAAAAGGAAAGGGAAGCGAATCAGACGAGGAGATTCCGACGA 60
||||||||||||||||||||||| || ||||||||||||||||| | ||||||||| |||
Sbjct 79 TTTGTCTCCGAGTATGGAGAAAATGAGAGGGAAGCGAATCAGACCAAGAGATTCCGGCGA 138
Query 61 GTTATTCGAAGATGGGGGATCTCAAAACGGGCGTAAGGCGAGGAAGAAAGAGAATGATCT 120
|||| ||||||||||| ||||| ||| || ||||||| |||||||||||||||||||| |
Sbjct 139 GTTAGTCGAAGATGGGAGATCTGAAAGCGAGCGTAAGACGAGGAAGAAAGAGAATGATGT 198
Query 121 TGTGAGCAGAGGACGAATCGGAAGAGGAAGAGGAAGAAGAAAATTTGATGGCGGAGAGGT 180
|||||||| |||| ||||||||||||| | | | || | || || ||||||||
Sbjct 199 TGTGAGCAAAGGAAGAATCGGAAGAGG-A-A-G-AG--G--AA---GA----GGAGAGGT 243
Query 181 TTCTAAGCGATCTATTGAAATCGACATGTCTAATCCCGAGAAGGATATTAAGTCTGATGG 240
||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||
Sbjct 244 TTCGAAGCGATCTATTGAAATAGACATTTCTAATCCCGAGAAGGATATTAAGCCTGACGG 303
Query 241 AAGCAGAAAGTATGTGGGTTTGACGTGTCATCATTGTAAGAACTTGACGAGTGAGAGTGA 300
||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 304 AAGCAGAAAGTGTTTGGGTTCGACGTGTCATCATTGTAAGATCTTGACGAGTGAGAGTGA 363
Query 301 TCTTATCTTCTGTTCAAAATGTAACAAGAA--G-TATTGCAATGAGTGTATCAAGAGATG 357
|||||||||||||||||| ||||||||||| | |||||| ||| || ||||||||||
Sbjct 364 TCTTATCTTCTGTTCAAAGTGTAACAAGAAGTGTTATTGCTTTGACTGCATCAAGAGATC 423
Query 358 GTATTCAGAAAGAACA-ATAGAGGAAGTTCGAGCTGCTTGTCCATTCTGTATGAAGAATT 416
|||||||||||||||| || ||||||||| |||||||||||||||||||||||| || ||
Sbjct 424 GTATTCAGAAAGAACACAT-GAGGAAGTTAGAGCTGCTTGTCCATTCTGTATGATGACTT 482
Query 417 GCAATTGCAGAGGTTGTTTGCGGTTGCCTTTGGTTGTCAAGCCTCGAAGTGAAAAAGAAA 476
||| |||||||| |||||||||||||||||||||| ||||||||| |||||||||||| |
Sbjct 483 GCATTTGCAGAGCTTGTTTGCGGTTGCCTTTGGTTATCAAGCCTCCAAGTGAAAAAGATA 542
Query 477 CAAATGTCAAGTTTAAGCAGTTGCAGTACCTATTAGTTAAAGTTCTCCCAGTTCTTAAGG 536
|| |||||||| |||||||| ||||||| || ||||| ||||||||||||||||||||||
Sbjct 543 CAGATGTCAAGCTTAAGCAGCTGCAGTATCTGTTAGTCAAAGTTCTCCCAGTTCTTAAGG 602
Query 537 ATATTTATATGGAGCAGAACCGTGAACTTGAGATTGAAGCAACTATTAGAGGACTCCCTG 596
||||||||| |||||||||||||||||| ||||||||| |||| |||||||||| |||||
Sbjct 603 ATATTTATACGGAGCAGAACCGTGAACTAGAGATTGAATCAACAATTAGAGGACACCCTG 662
Query 597 TGACAGAAGCTAATATTAATAGGTGCAAACTTGACCCAAGTGAACGCATATACTGTGATC 656
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 663 TGACAGAAGCTAATATCAAGAGGTGCAAACTTGACCCAAGCGAACGCATATACTGTGATC 722
Query 657 TCTGCCGAACATCCATTGCCAATTTTTACAGAAGCTGTCCGAACCCAGATTGTTCAGTCG 716
||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 723 TCTGCCGCACATCCATTGCCAATTTTCACAGAAGCTGTCCGAACAAAAATTGTTCAGTCG 782
Query 717 ATATATGTCTTTCTTGTTGCAAGGAACTAAGTGAGGGATTCCATCAAGAGAGAGATGGGA 776
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 783 ATATATGTCTTTCTTGCTGCAAGGAACTAAGTGAGGGCTTCCATCAAGAGAGAGATGGGA 842
Query 777 AGAAAAATGCAGAAGGGAAAGGATATGAATGGCGAATCCAAGCAGGTCAAGGAAAAGATT 836
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
Sbjct 843 AGAAAAATGCAGAAGGGAAAGGATATGAATGTCGAATCCCAGCAGGTCAAGGAAAAGACT 902
Query 837 CGGAAGCCTATGTTCCACTGCATTTCTCTACTTGGAAGATTAAATCAGACAGTAGCATTC 896
|||| || |||||||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct 903 CGGACGCATATGTTCCACTGCATTTCTCGACTTGGAAGCTTAACTCAGACAGTAGCATTC 962
Query 897 CATGCCCTCCAAAAGAGTGTGGTGGTTGTGGTACTTCAACACTGGAGTTGAGACGCTTAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CATGCCCTCCAAAAGAGTGTGGTGGTTGTGGTACTTCAACACTGGAGTTGAGACGCTTAT 1022
Query 957 GGAAAAAAGATTGGGTTGAAAAATTAATAACGAATGCCGAGGAATGTACTCTGCATTTTA 1016
|||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1023 GGAAAAGAGATTGGGTTGAAAAATTAATAACGAATGCCGAGAAATGTACTCTGAATTTTA 1082
Query 1017 GGCCATCAGATGTGGATATTGCTCATGAATGTTCCTCATGCACTACCAATTCTGATTCCA 1076
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1083 GGCCAACAGATGTGGATATTGTTCATGAATGTTCCTCATGCTCTACCAATTCTGATTCCA 1142
Query 1077 TTAGAAGGCAGGCAGCATTTAGGAAGAATGCTCATGATAATTTCTTGTACTCCCCAAATG 1136
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1143 TTAGAAGGCAGGCAGCTTTTAGGAAGAATGCTCATGATAATTTCTTATACTCCCCAAATG 1202
Query 1137 CTGTTGATCTGGCTGAAGACGATATTGCTCATTTTCAGTCGCATTGGATGAGGGCAGAAC 1196
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1203 CTGTTGATCTGGCTGAAGACGATATTGCTCATTTTCAGTTTCATTGGATGAAGGCAGAAC 1262
Query 1197 CTGTTATAGTTAGAAATGTTCTCGAGAAGACGTCTGGACTAAGTTGGGAACCAATGGTTA 1256
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1263 CTGTGATAGTCAGAAATGTTCTCGAGAAGACATCTGGACTAAGTTGGGAACCAATGGTTA 1322
Query 1257 TGTGGAGGGCTTGTAGGGAAATGGATCCAAAGCTTAAATGTAAAGAAGAAGAGACGAA-A 1315
||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| || |
Sbjct 1323 TGTGGAGGGCTTGTAGGGAAATGGATCCAAAGCGTAAAGGTACAGAAGAAGAGAC-AACA 1381
Query 1316 AAAGTCAAAGCTTTGGATTGCTTGGACTGGTGTGAGGTTGAAATAAATATTCATCAGTTT 1375
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1382 AAAGTGAAAGCTTTGGATTGCTTGGACTGGTGTGAGGTTGAAATAAATCTGCATCAGTTT 1441
Query 1376 TTTGACGGCTACTTAGAAGGCCGCATGCATAAAAACGGTTGGCCAGAAATGTTGAAATTG 1435
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TTTGAGGGCTACTTAGAAGGCCGCATGCATAAAAACGGTTGGCCAGAAATGTTGAAATTG 1501
Query 1436 AAGGATTGGCCTCCATCA-ACTTTATTTGAAAAGCGCCTTCCAAGGCATAATGCTGAGTT 1494
||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1502 AAGGACTGGCCTCCCTCAGA-TTTATTTGAAAAGCGCCTTCCAAGGCATAATGCTGAGTT 1560
Query 1495 TATTGCTGCACTGCCTTTCTTTGATTACACTGATCCAAAGTCTGGTATCCTAAATCTCGC 1554
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1561 TATTGCCGCATTGCCTTTCTTTGATTACACTGACCCAAAGTCTGGTATCCTAAATCTCGC 1620
Query 1555 AACAAGACTTCCAGAAAAATCCTTGAAGCCAGATCTTGGACCCAAGACATACATTGCGTA 1614
||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AACAAGATTTCCGGAAGGATCCTTGAAGCCAGATCTTGGACCCAAGACATACATTGCGTA 1680
Query 1615 CGGTTTCCATGAAGAGCTTAATAGAGGAGATTCGGTGACAAAACTACATTGTGATATTTC 1674
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1681 CGGTTTCCATGAAGAGCTTAATAGAGGAGATTCGGTGACAAAACTTCATTGTGACATTTC 1740
Query 1675 TGACGCGGTCAATGTGTTGACACACACAGCTAAAGTGGAAATCCCTCCCGCCAAATACCA 1734
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1741 TGACGCGGTCAATGTGTTGACACACACAGCTAAAGTGGAAATCCCTCCCGTCAAATACCA 1800
Query 1735 AAACATAAAAGTACATCAGAAAAA-TAATGCAGAAGCCATGTTGCAGAAACAGCAATACA 1793
|||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 1801 AAACATAAAAGTACATCAGAAAAAATA-TGCAGAAGCCATGTTGCAGAAACAACAATACA 1859
Query 1794 GTGGTCAAGTGACAGAAGCCAGCGAACTTGAAAATAAGTCACTGAAAGAAGTGGATGAT- 1852
|||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1860 GTGGTCAAGTGAAAGAAGCCAGCGAACTTGAAAACAAGTCAATGAAAGAAGTGGATGAAA 1919
Query 1853 GATAAACAGGATTTAAAGGACAAGGCAGCTAACGAAGAACAGTCAAATAACAGTTCAAGA 1912
| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1920 G-TAAAAAGGATTTAAAAGACAAGGCAGCTAACGAAGAACAATCAAATAACAGTTCAAGA 1978
Query 1913 CCG--GG-CTCACAAGAAGTTGAGAAAGTAAATATTTCAAAAGAGGATAATCCCACACAA 1969
||| || |||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1979 CCGTCGGGCTCAGGAGAAGCTGAGAAAGTAATTATTTCAAAAGAGGATAATCCCACACAA 2038
Query 1970 CCTGCTGTGAGTATAATTGTGGAATCCATACAAGAGCAGAAGCTGGATGTTC-AAAAGAA 2028
||||||||||||| || |||||||||||||||||| ||||||||||||| || |||||||
Sbjct 2039 CCTGCTGTGAGTACAAGTGTGGAATCCATACAAGAACAGAAGCTGGATGCTCCAAAAGAA 2098
Query 2029 AACAGATGGCAATACCAATGAGAGGTCAAAGGCTGTGCACGGTGGTGCTGTCTGGGATAT 2088
| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2099 A-CTGATGGCAATACCAATGAGAGGTCAAAGGCTGTGCATGGTGGTGCTGTCTGGGATAT 2157
Query 2089 CTTTCGAAGAGAGGATGTTCCAAAACTTATTCAGTTTTTGAAAAGGCACAAGCATGAGTT 2148
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2158 CTTTCGAAGAGAGGATGTTCCAAAACTTATTCAGTTTTTGAAAAGGCACGAGCATGAGTT 2217
Query 2149 TCGTCACATCAATAACGAACCCGTGAAATCTGTTGTTCACCCAATTCATGACCAGACTAT 2208
||||||| |||||||||||||| || |||| ||| |||||||||||||||||||||||||
Sbjct 2218 TCGTCACTTCAATAACGAACCCCTGGAATCCGTTATTCACCCAATTCATGACCAGACTAT 2277
Query 2209 GTTCTTGTGTGAAAGTCAGAAGCAACAGCTGAAGGAGGAATTTGATATAGAACCATGGAC 2268
||||||| |||| || |||||| |||||||||| || |||||||||||||||||||||||
Sbjct 2278 GTTCTTGAGTGATAGCCAGAAGAAACAGCTGAAAGAAGAATTTGATATAGAACCATGGAC 2337
Query 2269 CTTTGAGCAACACCTCGGCGAAGCTGTTTTCATACCTGCAGGGTGTCCTCACCAAGTGAG 2328
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 2338 CTTTGAGCAACACCTCGGCGAAGCAGTCTTCATACCTGCAGGTTGTCCTCACCAAGTGAG 2397
Query 2329 GAATAGACAGTCTTGCATAAAGGTGGCACTAGACTTTGTGGCTCCTGAAAGCGTTGAAGA 2388
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2398 GAATAGACAGTCTTGCATAAAGGTGGCACTAGACTTTGTGGCTCCTGAAAGCGTCGAAGA 2457
Query 2389 ATGCCTTAGGCTAACACAGGAGTTCCGTAGATTACCGAAAGACCACAGATCTAGCGAAGA 2448
||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||
Sbjct 2458 ATGCCTTAGGCTAACACAGGAGTTCCGGAGATTGCCTAAAGACCACAGTTCTAGCGAGGA 2517
Query 2449 TAAATTGGAGCTTAAGAAAATAGCGCTTTATGCTGCGAGCTCAGCCATAAGAGAGGTAAA 2508
||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||
Sbjct 2518 TAAATTGGAGCTTAAGAAAATTGCACTGTATGCTGCGAGTTCAGCCATAAGAGAGGTAAA 2577
Query 2509 -GGAGCTAATGCAAAACTCCACGACGCAGTGATGCCTAACAAATGACAAG 2557
|| ||||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct 2578 AGG-GCTAATGCAAAGCTCC-CGACGCAGTGATACCTAACAAATGACAAG 2625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126922365790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5