BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490476
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00895.1 | Symbols: | ATPase, F1 complex, OSCP/delta subuni... 1142 0.0
> AT4G00895.1 | Symbols: | ATPase, F1 complex, OSCP/delta subunit
protein | chr4:381788-382643 FORWARD LENGTH=856
Length=856
Score = 1142 bits (618), Expect = 0.0
Identities = 758/822 (92%), Gaps = 23/822 (3%)
Strand=Plus/Plus
Query 1 ATGGATACTCTCTCAGCATCCGTTTCATCATCCTTGAACCTCCCTTCTCTTCCTCCACCG 60
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 36 ATGGATACTCTCTCAGCATCCG-TT--TCATCCTTGAACCTCCCTTCTCTTCCTCCACCA 92
Query 61 CCGCAACCACCGTTGAGATCCATCTCCCGCCGCTTTAAATCCAGCGCAAACGCCACCACT 120
||||| ||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 93 CCGCAGCCACCGTTGAGATCCATCTCCAGCCGCTTTAAATCCACCGTAAACGCCACCACT 152
Query 121 TCTGCTGCGTCTACCAATCTATCAAAACCAACATCGTCTTCACCTTCTT---CATCATAC 177
|||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 153 TCTGCTTCATCTACCAATCTTTCAAAACCAACATCGTCTTCACCTTCTTCAGCATCATAC 212
Query 178 TCCCACCACAAAAACCTTAATTT-CTCCAGAGCAATCTCGTTTCCGGTTCCGCACACAAA 236
|| || ||| ||||| |||||| || || |||||||||||||| ||||||| || ||
Sbjct 213 TCACAGAACAGAAACCCTAATTTCCT-CAAAGCAATCTCGTTTCATCTTCCGCAAACGAA 271
Query 237 ACCCTCTAGA---GTTACTCCTCCTCCTCCTCCGGTGCACGATAAAGCGGCCTCGGGGTT 293
|||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 272 ACCCTCGAGAGTTGTTACTCCTCCTCCTCCTCCGGTGCATGATAAAGCGGCCTCAGGGTT 331
Query 294 TGCTGCGGCGCTCGTTAGCGTTTGTCAATCGAAGAATTGCCTTGGTCGGACTCAAGAAGA 353
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 332 TGCTGCGGCGCTCGTTAGCGTTTGTCAATCGAAGAATTGTCTTGGTCGGACTCAAGAAGA 391
Query 354 TGTCAGAAGATTGATGGAGTTTCTTGTGGGAGAAGAAAAGAAGAGGAACAAGGTCTTAGT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TGTCAGAAGATTGATGGAGTTTCTTGTGGGAGAAGAAAAGAAGAGGAACAAGGTCTTAGT 451
Query 414 CAATGATGTTGTTGAGAGAGGTAAATTTGGTAAACACTTGAAGGGCTTGGTCAAGATGTT 473
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 452 CAATGATGTTGTTGAGAGAGGTAAATTTGGTAAACACTTCAAGGGCTTGGTCAAGATGTT 511
Query 474 GATTACAAGAGGTAAATCTGGGATTCTCGTTGATGTTTTAATGGAATTTCAGAGAATCTG 533
|||| |||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 512 GATTGCAAGAGGTAAATCTGGGATTCTGGTGGATGTTTTAATGGAATTTGAGAGAATCTG 571
Query 534 TAATGAATTGGTCACAACAAAACTTGTCTGGGTTTCTTGATGATACAAAAGATTATATCT 593
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TAATGAATTGGTCTCAAAAAAACTTGTCTGGGTTTCTTGATGATACAAAAGATTATATCT 631
Query 594 AATCCAAAGTTTGCTTCTTTACACAAGAAATGTTATACTACTTGTCTTTGGTTGATGTTT 653
||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 632 AATCCAAAGTTTGCTTCTTTA-A---GAAATGTTACACTACTTGTCTTTGGTTGATGTTT 687
Query 654 TTATGGAATCTGAGAGAATCTGTAATAAATTGTTTGT-CT-GATGAAACAAAAGATTGTA 711
| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 688 TAATGGAATCTGAGAGAATCTGTAATAAATTATTTGTTCTTGATGAAACAAAAGATTGTA 747
Query 712 AAAGAGATTATATCTAATCCAAAGTTTGATTTTGCTTCCACAAAGAATTAAAAAACAACA 771
|||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 748 AAAGAGATTATATCAAATCCAAAGTTTGATTTAGCTTCCACAAAGAATTTAAAAACAATA 807
Query 772 GGTTTAG-TTACTACTGTCTCTTTGGTTGAGATTTCTTAATG 812
|| ||| ||||| |||||||||||| ||||||||||
Sbjct 808 AC---AGGTTA--ACTGTGTCTTTGGTTGAGGTTTCTTAATG 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5