BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490488
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00780.1 | Symbols: | TRAF-like family protein | chr4:33473... 1615 0.0
AT4G01390.1 | Symbols: | TRAF-like family protein | chr4:57024... 1020 0.0
> AT4G00780.1 | Symbols: | TRAF-like family protein | chr4:334732-336344
FORWARD LENGTH=1171
Length=1171
Score = 1615 bits (874), Expect = 0.0
Identities = 1091/1191 (92%), Gaps = 34/1191 (3%)
Strand=Plus/Plus
Query 1 GTATAAGTCTCCTCCACTTAAGAAGATATCATTTGCAGCTTCTTACAATGTCGCGACCAA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GTATAAGTCTCCTCCACTTAAGAAGATATCATTTGTAGCTTCTTACAATGTCGCGACCAA 60
Query 61 TCCCTATTGAAGAAATGGTGAGACTGTT-TAAATCGCGTTACACAACATCTCACTTGTTC 119
|||| ||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||
Sbjct 61 TCCCCATTGAAGAAATGGTGAGGCTGTTCAAAAT-ACGTCACACAACATCTCACTTGTTC 119
Query 120 AAGATAGACAACTTCTCTTTACTCAAAAAGCATGGAGTCGAAAAGGTCGAATCCTCTGTT 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 AAGATAGACAACTTCTCTTTACTCAAAAAGCATGGAATCGAAAAGGTCGAATCCTCTGTT 179
Query 180 TTCGATCTCGCTGGTCACAAATGGACACTCTCTGTGTACCCAAATGGGCATAA-AAGTGC 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 180 TTCGATCTCGCTGGTCACAAATGGAAACTCTCTGTGTACCCAAATGGGCATAAGAA-TGC 238
Query 239 TAAGGGGACTCATGTCTCCATCTTCTTAATGAATCAAGTTTCAGTAAATGTTTTGCTTAC 298
||||||||||||||||||||| |||||| ||||||||||| | ||||||| | ||| |||
Sbjct 239 TAAGGGGACTCATGTCTCCATGTTCTTAGTGAATCAAGTTCCGGTAAATGATATGCCTAC 298
Query 299 ATATGAGCTCTTTGTCGTCAGTCAACTAGAGCGAAAATGGCACACCTATGGAAGAGATGA 358
|||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 299 ATATGAGCTCCTAGTCGTCAGTCAACTAGAGCGAAAATGGCACACCCATGGACGAGATGA 358
Query 359 GTTTGATACAAATCCAGAACCGGCTACTGAGGGGTTTTTAAGGTTCATATCTTTTGCTGA 418
|||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 359 GTTTGATATAAATCCAGAACCAGCTAGTGAGGGGTTTTTAAGGTTCATATCTCTTGCTGA 418
Query 419 TCTTGAGAGAAAAGGTTTCCTTATTGGAGATTGTTGTATGTTTGGTGTCAAGTTTTATGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 TCTTGAGAGAAAAGGTTTCCTTATTGGAGATTGTTGTATGTTTGGTGTCAAGTTTCATGG 478
Query 479 GATTGAACCTGCTAATCCCGGGACAGCGGAATGTTTTAGCTTAATTGAGAAGCCTCTTAA 538
||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||
Sbjct 479 GATTGAACCTGCTAATCCCGGAACAGCAGAGTGTTTTAGCTTAATAGAGAAGCCTCTTAA 538
Query 539 TCACAAAGTTACCTGGATGATGAGCAAGTTCTCGTCCTTCAACCCTGGAAAGGCTCATCA 598
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCACAAAGTCACTTGGATGATGAGCAAGTTCTCGTCCTTCAACCCTGGAAAGGCTCATCA 598
Query 599 GTCTAATGAATTTGTCGTTGGAACCAGGAAATGGAGAATTAAAGTTCATCCAAGAGGGTA 658
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 599 GTCTAATGAATTTGTCGTTGGAACCAGGAAATGGAGACTTGAAGTTCATCCAAGAGGGTA 658
Query 659 TAATG-AGGAAAAAGACAAATCATTTTCTGTGTATCTATCCGCAGAAGGGTTTGTCAAGA 717
|| || | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 659 TA-TGGATGAAAAAGACAAATCATTTTCTGTGTATCTATCAGCAGAAGGGTTTGTCAACA 717
Query 718 ATGCACCAAACACAAAAACTTACGCGAGGTTCAAGCTGCGGGTATTGGATCAAGTTAGCT 777
||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 718 ATGCACCAATGACAAAAACTTACGCCAAGTTCAAGCTGCGGGTATTGGATCAAGTTAGCT 777
Query 778 GGAATCATGCTGAGAGAG-CAGGTACGGAG-TGGTTTGATGCAGAACCT--G-AGCAAAG 832
||||||||| |||| || ||||| | || |||||||||||||||||| | | |||||
Sbjct 778 GGAATCATGTTGAG-GAATCAGGTTTG-AGCTGGTTTGATGCAGAACCTTCGGACCAAAG 835
Query 833 TGGCTTTGCGGATTTCATGCCTTTGGAGAAACTAGATGAACCTTATTTGGTGAAGGATAA 892
|||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||||
Sbjct 836 TGGCTTTGCGGATTTCATGCCTCTGGGGAAACTAAATGAACCTTATTTGGTAAAGGATAA 895
Query 893 GCTTTATGTGGGAGTTGAGTTTGAAGTCATTTCTACCACTAATTACTGTTAGCTTCTTGG 952
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 896 GCTTTATGTGGGAGTTGAGTTTGAAGTCGTTTCTACCACTTATTACTGTTAGCTTCTAGG 955
Query 953 CTTTAATAAACCTTATTGTGAGCTAAAAATAGCAACAAATATTATAATGTATTGAATAAA 1012
|| |||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 956 CTGTAATAAGTCTTATTGTGAGCTAAAAATAACAAGAAATGTTATAATGTATTGAATAAA 1015
Query 1013 ATGCTGGAGAATGTACCTACTGATGCAGTAATGACTTGGAGGTTGGA-CTACATCGACCG 1071
||| ||||||||||||||||||| | | ||||||||| ||| |||||| ||||
Sbjct 1016 ATGTTGGAGAATGTACCTACTGA-G-A-------CTTGGAGGT-GGAACTACATTGACCT 1065
Query 1072 AGTCTTAGCCAAAGTCATATTTCTCTTTTT-GTCGTTTGTATAAATAAAACAGTTTATTT 1130
||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||
Sbjct 1066 AGTCTTAGCCAAAGTCAGATTTCTCTTTTTTGTCGTTCGTATAAATAATACAGTTT---- 1121
Query 1131 GCTTCCAAGTTTTTAGGAACTTTTGTCATCAAAGTCACACTTGCAATTAGT 1181
|||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 1122 GCTTCCAAGTTTC-A----CTTTTGTCATCAAAGTCAGACTTGCAATTAGT 1167
> AT4G01390.1 | Symbols: | TRAF-like family protein | chr4:570242-571595
REVERSE LENGTH=903
Length=903
Score = 1020 bits (552), Expect = 0.0
Identities = 797/913 (87%), Gaps = 26/913 (3%)
Strand=Plus/Plus
Query 48 ATGTCGCGACCAATCCCTATTGAAGAAATGGTGAGACTGTTTAAA-TCGCGTTACACAAC 106
||||||||||||||| | |||||||||||||||||||||| ||| | ||| || ||||
Sbjct 1 ATGTCGCGACCAATCTCGCTTGAAGAAATGGTGAGACTGTTCAAAGT-ACGTCACGCAAC 59
Query 107 ATCTCACTTGTTCAAGATAGACAACTTCTCTTTACTCAAAAAGCATGGAGTCGAAAAGGT 166
| ||||| |||||||||||||| | ||||||||||||| |||||||||| ||||||||||
Sbjct 60 AGCTCACATGTTCAAGATAGACCATTTCTCTTTACTCAGAAAGCATGGAATCGAAAAGGT 119
Query 167 CGAATCCTCTGTTTTCGATCTCGCTGGTCACAAATGGACACTCTCTGTGTACCCAAATGG 226
||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 120 CGAGTCCTCTGTTTTCGATCTCGCTGGTCACAAATGGAAACTCTCTGTGCACCCAAATGG 179
Query 227 GCATA-AAAGTGCTAAGGGG--AC-TCATGTCTCCATCTTCTTAATGAATCAAGTTTCAG 282
|||| ||| |||||||||| || | |||||||| ||| |||||||||||||| | | |
Sbjct 180 CCATACAAA-TGCTAAGGGGACACATTATGTCTCCCTCTACTTAATGAATCAAGCTCCGG 238
Query 283 TAAATGTTTTGCTTACATATGAGC-TCTTTGTCGTCAGTCAACTAGAGCGAAAATGGCAC 341
|| ||| | |||||||||||||| || ||| |||||||||||| |||| ||||||||||
Sbjct 239 TATATGATACGCTTACATATGAGCTTC-TTGCCGTCAGTCAACTTGAGCCAAAATGGCAC 297
Query 342 ACCT-ATGGAAGAGATGAGTTTGATACAAATCCAGAACCGGCTACTGAGGGGTTT-TTAA 399
| || | ||||||||||| | || || ||| ||||| || || |||||||||| | |
Sbjct 298 A-CTCACGGAAGAGATGAATACGAAACCAATGAAGAACTGGGTAGTGAGGGGTTTCGTGA 356
Query 400 GGTTCATATCTTTTGCTGATCTTGAGAGAAAA-GGTTTCCTTATTGGAGATTGTTGTATG 458
|||||||||| ||| ||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 357 -GTTCATATCTCTTGTTGATCTTAAGA-AAAATGGTTTCCTTATTGGAGATTGTTGTATG 414
Query 459 TTTGGTGTCAAGTTTTATGGGATTGAACCTGCTAATCCCGGGACAGCGGAATGTTTTAGC 518
|||||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 415 TTTGGTGTCAAGTTCCATGGGATTGAACCTGCTAAACCCGGAACAGCGGAAAGTTTTAGC 474
Query 519 TTAATTGAGAAGCCTCTTAATCACAAAGTTACCTGGATGATGAGCAAGTTCTCGTCCTTC 578
||||| ||||||||||||||||||| ||| || |||||||||| || |||||||||||||
Sbjct 475 TTAATAGAGAAGCCTCTTAATCACAGAGTCACTTGGATGATGACCATGTTCTCGTCCTTC 534
Query 579 AACCCTGGAAAGGCTCATCAGTCTAATGAATTTGTCGTTGGAACCAGGAAATGGAGAATT 638
||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 535 AACCCTGGAAACGTTCATCAGTCTAATGAATTTGTCGTTGGAACCCGGAAATGGAGAATT 594
Query 639 AAAGTTCATCCAAGAGGGTATAATGAG-GAAAAAGACAAATCATTTTCTGTGTATCTATC 697
||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||
Sbjct 595 AAAGTTCATCCAAGAGGGTCTA-TGGGTGAAAAAGACAAATCATTTTCTGTGTATCTATC 653
Query 698 CGCAGAAGGGTTTGTCAAGAATGCACCAAACACAAAAACTTACGCGAGGTTCAAGCTGCG 757
||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 654 GGCACTAGGGTTTGTCAATAATGCACCAAAGACTAAAACTTACGCGAGGTTCAAGCTGCG 713
Query 758 GGTATTGGATCAAGTTAGCTGGAATCATGCTGAGAGAGCAGGTACGGAGT-GGTTTGATG 816
|||||||||||||||||| ||||||||| ||||| | || | ||| || || ||| ||
Sbjct 714 TGTATTGGATCAAGTTAGCAGGAATCATGTTGAGAAAACAATTTCGG-GTTGGCTTGGTG 772
Query 817 CAGAACCTGA-G-CAA--AGTGGCTTTGCGGATTTCATGCCTTT-GGAGAAACTAGATGA 871
|||||||||| | | | |||||||||||||||||||||| | || ||| || |||||
Sbjct 773 CAGAACCTGATGACCGCCA-TGGCTTTGCGGATTTCATGCCTCTAGGGGAA-CTTGATGA 830
Query 872 ACCTTATTTGGTGAAGGATAAGCTTTATGTGGGAGTTGAGTTTGAAGTCATTTCTACCAC 931
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |
Sbjct 831 CCCTTATTTGGTGAAGGATAAGCTTTATGTGGGAGTTGACTTTGATGTCATTTCCGTCTC 890
Query 932 TAATTACTGTTAG 944
|||||||||||||
Sbjct 891 TAATTACTGTTAG 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57981629475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5