BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490510 Length=1668 Score E Sequences producing significant alignments: (Bits) Value AT4G00550.1 | Symbols: DGD2 | digalactosyl diacylglycerol defic... 2340 0.0 > AT4G00550.1 | Symbols: DGD2 | digalactosyl diacylglycerol deficient 2 | chr4:237967-240500 REVERSE LENGTH=1891 Length=1891 Score = 2340 bits (1267), Expect = 0.0 Identities = 1444/1527 (95%), Gaps = 21/1527 (1%) Strand=Plus/Plus Query 42 TCAATTCAAAGATTGTTTCTGAATTGGAATCCTACAGAGGTTTAGCTTGAGATGATATGA 101 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 227 TCAACTCAAAGATTGTTTCTGAATTGGAATCTTACAGAGGTTTAGCTTGAGATGATATGA 286 Query 102 CGAAGCAGCAGCAGCAGCAACACATTGCCATATTTACCACAGCTAGTATTCCATGGCTTA 161 | || |||||| | ||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 287 CTAATCAGCAG--G-AGCAACACATTGCGATATTTACAACAGCTAGTATTCCATGGCTTA 343 Query 162 CGGGAACTGCTGTTAATCCTCTTTTCCGTGCTGCCTACCTTGCAAATGACGGGGAAAGAC 221 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 344 CGGGAACTGCTGTTAATCCTCTCTTCCGTGCTGCCTACCTTGCAAATGATGGGGAAAGAC 403 Query 222 GGGTCACTTTAGTGATTCCATGGCTGACAGTGAAGCACCAAAAGCTTGTCTACCCAAATA 281 ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 404 GGGTCACGTTGGTGATTCCATGGCTGACTTTGAAGCACCAAAAGCTTGTCTACCCAAATA 463 Query 282 GCATCACTTTTAGTTCCCCATCAGAGCATGAAGCTTATGTCCGCCACTGGCTTGAGGAGA 341 ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| Sbjct 464 GCATCACTTTTAGTTCCCCGTCAGAGCAAGAAGCTTATGTCCGCCAGTGGCTTGAGGAGA 523 Query 342 GAGTCTCATTTCCTTTAGGCTTTGAGATACGTTTCTATCCTGGAAAGTTTGCTACGGACA 401 ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 524 GAGTCTCTTTTCGTTTAGCCTTTGAGATACGTTTCTATCCTGGAAAGTTTGCTATTGACA 583 Query 402 AAAGAAGTATTCTTCCTGTTGGGGATATATCTGATGCCATTCCTGATGAAGAGGCAGACA 461 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 584 AAAGGAGTATTCTTCCTGTTGGGGATATATCTGATGCCATTCCTGATGAAGAGGCAGACA 643 Query 462 TTGCTGTCCTCGAGGAGCCTGAGCATCTCACATGGTTTCATCATGGCAAAAAATGGAAAA 521 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 644 TTGCTGTCCTCGAGGAGCCTGAGCATCTCACATGGTTTCATCATGGCCAAAAATGGAAAA 703 Query 522 CTAAGTTCAACTACGTCATAGGAATCGTACACACCAACTACTTGGAATACGTAAAAAGAG 581 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 704 CTAAGTTCAACTACGTCATAGGAATCGTACACACTAACTACTTGGAATACGTTAAAAGAG 763 Query 582 AGAAACAAGGCCGCGTCAAAGC-TTTTCTCCTCAAGTACTTAAACAGTTGGGTTGTTGGC 640 ||||||||||||| |||||||| |||| ||||||| |||||||| ||||||||||||||| Sbjct 764 AGAAACAAGGCCGTGTCAAAGCATTTT-TCCTCAAATACTTAAATAGTTGGGTTGTTGGC 822 Query 641 ATTTACTGCCACAAGGTAATCAGGTTATCTGCTGCGACTCAAGAATACCCTAAATCTATA 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 823 ATTTACTGCCACAAGGTAATCAGGTTATCTGCTGCGACTCAAGAATACCCTAAATCTATA 882 Query 701 GTCTGCAACGTTCATGGTGTCAACCCTAAGTTTCTGGAGATTGGGTTGAGAAAACTAGAA 760 |||||||| |||||||| ||||||||||| ||||| || ||||||||||||||||||||| Sbjct 883 GTCTGCAATGTTCATGGCGTCAACCCTAAATTTCTCGAAATTGGGTTGAGAAAACTAGAA 942 Query 761 CAGCAGAAGCTCCAGGAGCAGCCCTTCACTAAAGGCGCATACTACATTGGTAAGATGGTC 820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 943 CAGCAGAAGCTCCAGGAGCAGCCCTTCACTAAAGGCGCATACTACATTGGTAAGATGGTC 1002 Query 821 TGGAGCAAAGGGTACAAGGAGCTTCTTAAACTACTTGAGAAACACCAAAAGGAACT--CC 878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1003 TGGAGCAAAGGGTACAAGGAGCTTCTTAAACTACTTGAGAAACACCAAAAGGAACTTGCC 1062 Query 879 TTGAGTTAGAGGTTGATTTATACGGTGATGGAGAGGACTCTGAAGAGATCAAAGAAGCAG 938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1063 --GAGTTAGAGGTTGATTTATACGGTGATGGAGAGGACTCTGAAGAGATCAAAGAAGCAG 1120 Query 939 CCCGAAAACTCGAGTTGACGGTTAATATTTACCCAGGACGTGATCACGCTGACTCACTAT 998 ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1121 CCCGAAAACTCGACTTGACGGTTAATGTTTACCCAGGACGTGATCACGCTGACTCGCTAT 1180 Query 999 TTCACAACTATAAAGTGTTTCTCAACCCCAGCACGACCGACGTTGTCTGCACAACAACTG 1058 ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| Sbjct 1181 TTCACAACTATAAAGTGTTTCTCAACCCCAGCACGACAGACGTTGTGTGTACAACAACTG 1240 Query 1059 CAGAAGCCTTGGCGATGGGAAAAATCGTAGTGTGCGCGAATCACATATCGAACGAGTTCT 1118 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| Sbjct 1241 CAGAAGCCTTGGCGATGGGAAAAATAGTAGTATGCGCGAATCACATATCGAACAAGTTCT 1300 Query 1119 TCAAACAGTTTCCCAACTGCAGAACCTATGACGATGGAAAAGGTTTTGTTAGAGCCACAG 1178 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | Sbjct 1301 TCAAACAGTTTCCCAACTGCAGAACCTATGACGATGGACAAGGTTTTGTAAGAGCCAC-G 1359 Query 1179 -TCAAGGCTCTTGGGGAACAACCATCGCAACTAACAGAGCAACAGAGGCATGAACTATCA 1237 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1360 CTCAAGGCTCTTGGGGAACAACCATCGCAACTTACAGAGCAACAAAGGCATGAACTATCA 1419 Query 1238 TGGGAAGCTGCTACACAACGATTTATAAAAGCCTGTGATCTGAGCCGGTTATCAAGAGCA 1297 |||||||||||||||||||| |||||||||| || |||||||| ||||||||||||||| Sbjct 1420 TGGGAAGCTGCTACACAACGGTTTATAAAAGTCTCTGATCTGAACCGGTTATCAAGAGCT 1479 Query 1298 GAATCAAACTTATCAAAGAAAAGTGTGTTTGCGTCATCTTCGATTAGTGTGGGGAAAAAC 1357 || || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1480 GATTCGAACTTGTCAAAGAGAAGTGTGTTTGCGTCATCTTCGATTAGTGTGGGGAAAAAC 1539 Query 1358 TTGGAGGATATGTCTGCGTATATTCATTTCTTGGCGTCTGGATTTGAAGCTTCAAGAACA 1417 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1540 TTGGAGGATATGTCAGCGTATATTCATTTCTTGGCGTCTGGATTTGAAGCTTCCAGAACA 1599 Query 1418 GCTTTTGGTGCTATACCAGGAAGCTTGCAGCCTGATGAAGAGTTGTGCAGAGATCTTGGT 1477 ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||| Sbjct 1600 GCTTTTGGTGCTATACCTGGAAGCTTGCAGCCCGATGAAGAGTTATGTAGAGATCTTGGT 1659 Query 1478 TTGTCTCTCAACACTTCTTCCCCAAATACTCGCAAGCAAGATTGACCGTTTGACTGTTTC 1537 ||||||||||||||| ||||||||||||||||||||||||||||||| | | | ||| Sbjct 1660 TTGTCTCTCAACACTCCTTCCCCAAATACTCGCAAGCAAGATTGACC-T--G--T-TTT- 1712 Query 1538 TTATTTTATCTTTGT-TG-A-ATCATT 1561 ||| ||||||||||| || | |||||| Sbjct 1713 TTAATTTATCTTTGTCTGCATATCATT 1739 Score = 126 bits (68), Expect = 6e-28 Identities = 103/119 (87%), Gaps = 5/119 (4%) Strand=Plus/Plus Query 1553 TGAATCATTCTATGGCATACTAT-ATAT-ATATGTTAACATGAAAGTTAGATTTTTCATC 1610 ||||||||||||| ||| || | | | |||| | | ||||||||||||||||||||| Sbjct 1775 TGAATCATTCTATAGCA-GCTTTGGTGTAATAT-TGATGATGAAAGTTAGATTTTTCATC 1832 Query 1611 TTGTGGAACATGTATGATGACACAAGTCTGA-TCATAAAATTTAGTATTTGATTCCATT 1668 ||||||||||||||||||||||| ||||||| | |||||||||||||| |||||||||| Sbjct 1833 TTGTGGAACATGTATGATGACACGAGTCTGAATTATAAAATTTAGTATATGATTCCATT 1891 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82429294890 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5