BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490517
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00490.1 | Symbols: BAM2, BMY9 | beta-amylase 2 | chr4:22232... 2861 0.0
AT4G00500.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 108 2e-22
> AT4G00490.1 | Symbols: BAM2, BMY9 | beta-amylase 2 | chr4:222320-225131
FORWARD LENGTH=2000
Length=2000
Score = 2861 bits (1549), Expect = 0.0
Identities = 1772/1876 (94%), Gaps = 29/1876 (2%)
Strand=Plus/Plus
Query 18 GTTTAGTAATGGCGATTAGGTTGAATCATTGTGTAATTCCAGTGAGCGTGAAGCTTGGAG 77
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 95 GTTTAGTGATGGCGATTAGGTTGAATCATAGTGTAATTCCAGTGAGCGTGAAGCTTGGAG 154
Query 78 CTCCGGCGAGAGTATCAGCTCGGAGCTCGTTACCGTTTAGCGTTGGAGATTGGCGTGGTG 137
||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 155 CTCCGACGAGAGTATCGGCTCGGAGCTCGTTACCGTTCAGCGTTGGAGATTGGCGTGGTG 214
Query 138 TTTCTACATTTTCTGGTGCTAGGCCGTCGTTGGTTTCT-GCCAAAGTGAAACAGAGAGCA 196
||||||||||||| ||||||||||| | |||| |||| || || ||||||| |||||||
Sbjct 215 TTTCTACATTTTCCGGTGCTAGGCC-T--TTGG-TTCTCGCGAAGGTGAAACTGAGAGCA 270
Query 197 GAGAGTACTGAGGAGGATCCAGTTCCAATTGAT---GACGACGATTCTACTGATCAGCTC 253
|||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 271 GAGAGTACTGAGGAAGATCGAGTTCCAATTGATGACGACGACGATTCTACTGATCAGCTC 330
Query 254 GTTGATGAAGAAATTGTGCATTTTGAAGAGCGTGATTTTTCTGGCACAGCGCGTGTTCCC 313
||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 331 GTTGATGAAGAAATTGTGCATTTCGAAGAGCGTGATTTTGCTGGCACAGCGTGTGTTCCT 390
Query 314 GTATATGTTATGCTACCATTGGGAGTCATTGATATGAACTCGCAAGTGGTTGAACCGGAA 373
|||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||
Sbjct 391 GTATATGTTATGCTACCACTGGGAGTGATTGATATGAACTCGGAAGTGGTGGAACCGGAG 450
Query 374 GAGCTTTTGGATCAGTTAAGAACCTTGAAGTCGGTTAATGTTGATGGTGTTATGGTTGAC 433
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 451 GAGCTTTTGGATCAGTTAAGAACTTTAAAGTCGGTTAATGTTGATGGTGTTATGGTTGAC 510
Query 434 TGCTGGTGGGGAATTGTCGAGGCTCATACACCACAGCTCTATAATTGGAGTGGTTACAAG 493
||||||||||||||||| ||| | |||||||||||| | ||||| |||||||||||||||
Sbjct 511 TGCTGGTGGGGAATTGTTGAGTCACATACACCACAGGTTTATAACTGGAGTGGTTACAAG 570
Query 494 AAACTCTTTCAGATGATTCGTGAGCTTGGACTTAAGATACAGGTTGTTATGTCCTTCCAC 553
||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 571 AAACTTTTTCAGATGATTCGTGAGCTTGGACTTAAGATTCAGGTTGTTATGTCGTTTCAC 630
Query 554 GAATGTGGAGGCAATGTTGGAGATGATGTGCATATACAAATCCCTGAGTGGGTTAGAGAA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 631 GAATGTGGAGGCAATGTTGGAGATGATGTGCATATACAAATCCCTGAGTGGGTGAGAGAA 690
Query 614 GTTGGTCAAAGCAATCCTGACATATACTTCACTGACAGAGCAGGCAGGCGTAACACTGAA 673
|||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 691 ATTGGTCAAAGCAATCCTGACATCTACTTCACTGACAGTGCTGGCAGGCGTAACACTGAA 750
Query 674 TGCCTTACTTGGGGAATTGACAAGCAACGGGTTTTAAGAGGACGAACTGCTCTGGAGGTT 733
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 751 TGCCTTACTTGGGGAATTGACAAGCAACGTGTTTTAAGAGGACGGACTGCTCTTGAGGTT 810
Query 734 TACTTTGATTACATGCGAAGCTTTCGGGTGGAATTTGATGAATTCTTTGAGGATAAAATC 793
||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 811 TACTTTGATTACATGAGAAGCTTTCGTGTGGAATTTGATGAATTCTTTGAGGAGAAAATC 870
Query 794 ATCCCTGAAATTGAAGTTGGACTAGGTCCATGTGGGGAGCTGAGGTATCCTTCATACCCT 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 ATCCCTGAAATTGAAGTTGGACTAGGTCCATGTGGGGAGCTGAGGTATCCTTCATACCCT 930
Query 854 GCACAATTTGGGTGGAAATATCCTGGTATTGGTGAATTTCAGTGTTATGATAAATATTTG 913
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 931 GCACAATTTGGGTGGAAATACCCTGGTATTGGTGAATTCCAGTGTTATGATAAATATTTG 990
Query 914 ATGAAGAGCCTAAAGGAGGCTGCAGAAGTAAGAGGCCACAGCTTTTGGGGCAGAGGACCT 973
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 ATGAATAGCTTAAAGGAGGCTGCAGAAGTAAGAGGCCACAGCTTTTGGGGCAGAGGACCT 1050
Query 974 GATAACACAGAGACTTATAATTCAACACCACATGGGACCGGATTTTTTCGCGATGGAGGC 1033
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1051 GATAACACAGAGACTTATAATTCAACACCACATGGGACTGGATTTTTTCGCGATGGAGGC 1110
Query 1034 GATTATGACAGCTACTATGGTAGATTCTTTCTTAATTGGTACTCAAGAGTTCTGATTGAC 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GATTATGACAGCTACTATGGTAGATTCTTTCTTAATTGGTACTCAAGAGTTCTGATTGAC 1170
Query 1094 CATGGTGATCGTGTTCTTGCTATGGCAAATTTGGCTTTCGAAGGAACTTGCATCGCTGCA 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1171 CATGGTGATCGTGTTCTTGCTATGGCAAATTTGGCTTTCGAAGGAACTTGCATTGCTGCA 1230
Query 1154 AAGCTCTCAGGTATACACTGGTGGTATAAAACAGCTAGTCATGCTGCTGAACTCACTGCT 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AAGCTCTCAGGTATACACTGGTGGTATAAAACAGCTAGTCATGCTGCTGAACTCACTGCT 1290
Query 1214 GGCTTCTACAACTCCTCAAACCGTGATGGCTATGGTCCAATAGCTGCAATGTTCAAGAAA 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1291 GGCTTCTACAACTCCTCAAACCGTGATGGCTATGGTCCAATAGCTGCAATGTTTAAGAAA 1350
Query 1274 CATGATGCTGCTCTCAATTTCACATGTGTGGAGTTACGGACACTTGATCAACATGAGGAT 1333
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 CATGATGCTGCTCTCAACTTCACATGTGTGGAGTTACGGACACTTGATCAACATGAGGAT 1410
Query 1334 TTTCCAGAGGCTCTGGCAGATCCAGAAGGCCTAGTTTGGCAGGTGCTGAATGCTGCTTGG 1393
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1411 TTCCCAGAGGCTCTGGCAGATCCAGAAGGTCTAGTTTGGCAGGTGCTGAATGCTGCTTGG 1470
Query 1394 GATGCTAGTATACCTGTTGCTAGTGAAAATGCTCTTCCTTGTTATGATAGAGAAGGTTAC 1453
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1471 GATGCTAGTATACCTGTTGCTAGTGAAAATGCTCTTCCTTGTTATGACAGAGAAGGTTAC 1530
Query 1454 AACAAGATACTTGAAAACGCAAAGCCCCTTACCGATCCTGATGGTCGCCACCTTTCATGT 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 AACAAGATACTTGAAAACGCAAAGCCCCTTACCGATCCTGATGGTCGCCACCTTTCATGT 1590
Query 1514 TTCACTTACCTGAGGCTTAACCCAACTCTGATGGAGTCTCAAAACTTCAAAGAGTTTGAG 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 TTCACTTACCTGAGGCTTAACCCAACTCTGATGGAGTCTCAAAACTTCAAAGAGTTTGAG 1650
Query 1574 AGATTCGTCAAACGAATGCATGGTGAAGCCGTTCCTGATCTTGGTTTGGCTCCAGGGACA 1633
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1651 AGATTCCTCAAACGAATGCATGGTGAAGCCGTTCCGGATCTTGGTTTGGCTCCAGGGACA 1710
Query 1634 CAAGAGACCAACCCCGAGTGAACATAT-TAGTACCTTCATTAGATCCATGCTACTAAAAA 1692
|||||||||||||||||||||| |||| |||| ||| || |||||||||||||||
Sbjct 1711 CAAGAGACCAACCCCGAGTGAATATATATAGT-CCTCCA------CCATGCTACTAAAAA 1763
Query 1693 CACTCATTAGTACCTGGTTA--TA-A-TAAGAACGTTTTGGCTTGGCTTTACCAATTAAG 1748
|||| ||||| |||||||| || | ||||||||| ||||||||| |||||||||| ||
Sbjct 1764 CACTTATTAGCGCCTGGTTACATATAATAAGAACGTCTTGGCTTGGGTTTACCAATTCAG 1823
Query 1749 CGTAGCCATGTTGAATA-AATTCAAAACCAAGATTGTAAAATTAGCTTGTAA-----AA- 1801
| |||| | |||| | ||| |||||||||||||||||| | ||||||||| ||
Sbjct 1824 CATAGCTAAGTTGGAGGGAAT-CAAAACCAAGATTGTAAACTGAGCTTGTAAGTTGTAAG 1882
Query 1802 -TGAACAGTGTATATAACAATATAAGTGTTATGTCCATTGATATTTCAGAAGAAATTGCT 1860
|||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1883 ATGAATAGTGTATAGAACAATATAAGTGGTATGTCCATTGATATTTCAGAAGAAATTGCT 1942
Query 1861 AGCAACATTACAGGCT 1876
||||||||||||||||
Sbjct 1943 AGCAACATTACAGGCT 1958
> AT4G00500.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:225028-227396 REVERSE LENGTH=1809
Length=1809
Score = 108 bits (58), Expect = 2e-22
Identities = 60/61 (98%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 1816 AACAATATAAGTGTTATGTCCATTGATATTTCAGAAGAAATTGCTAGCAACATTACAGGC 1875
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808 AACAATATAAGTGGTATGTCCATTGATATTTCAGAAGAAATTGCTAGCAACATTACAGGC 1749
Query 1876 T 1876
|
Sbjct 1748 T 1748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92871008250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5