BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490548
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00200.1 | Symbols: | AT hook motif DNA-binding family prot... 1157 0.0
> AT4G00200.1 | Symbols: | AT hook motif DNA-binding family protein
| chr4:82445-84694 REVERSE LENGTH=1413
Length=1413
Score = 1157 bits (626), Expect = 0.0
Identities = 852/954 (89%), Gaps = 43/954 (5%)
Strand=Plus/Plus
Query 185 TCAGGGAAGAAGAGGAGAGGCAGACCTCGTAAATATGGTGAAGCTAATGGTACTCCTTTG 244
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 408 TCAGGGAAGAAGAGGAGAGGCAGACCTCGTAAATA---TGAAGCTAATGGTGCTCCTTTG 464
Query 245 CCTTCTTCATCAACTCCTCTTCTGAAGAAACGAGCAAAAGGCAAGCTCAATGGTTTTG-- 302
|||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 465 CCTTCTTCATCAGTTCCTCTTGTGAAGAAACGAGTAAGAGGCAAGCTCAATGGTTTTGAT 524
Query 303 CTG-TCAAGATGCATAAGACCA-----TT-AACTCTTCTGCT-ACAGG--T-G-AAAGGT 350
|| |||||||||||||||| || | ||||||| | | ||| | | |||
Sbjct 525 ATGAAGAAGATGCATAAGACCATTGGGTTCCATTCTTCTGGTGAAAGGTTTGGTGTTGGT 584
Query 351 -TTGGCGTTGGTGGTGGTGCTGGATCAAATTTCACTCCGCATATAATCACAGTGAACACT 409
||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct 585 GGTGGTGTTGGTGGTGGTGTTGGATCAAATTTCACGCCGCATGTAATCACAGTGAACACT 644
Query 410 GGTGAGGATATTACTATGAGGATTATCTCCTTTTCTCAACAAGGACCACGAGCTATTTGT 469
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 645 GGTGAGGATATTACTATGAGAATCATCTCCTTTTCACAACAAGGACCACGAGCTATTTGT 704
Query 470 ATTTTATCAGCAAATGGAGTGATATCAAACGTCACTCTTCGCCATCCCGAATCTTGCGGT 529
|| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 705 ATCTTATCAGCAAATGGAGTGATATCAAACGTTACTCTTCGCCAACCCGATTCTTGCGGT 764
Query 530 GGTACTCTCACCTACGAGGGTCGGTTTGAGATACTGTCGCTGTCTGGTTCTTTCATGGAA 589
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 765 GGTACTCTCACCTACGAGGGTCGGTTTGAGATACTGTCTCTGTCTGGTTCATTCATGGAA 824
Query 590 ACAGAGAATCAAGGTTCAAGAGGACGGTCTGGTGGCATGAGCGTATCTTTGGCAGGTCCT 649
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 825 ACAGAGAATCAAGGTTCAAAAGGTCGGTCTGGTGGCATGAGTGTATCTTTGGCCGGTCCT 884
Query 650 GATGGTCGTGTTGTCGGTGGGGGTGTGGCCGGCCTGCTCATTGCTGCCACTCCTATTCAG 709
|||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||
Sbjct 885 GATGGTCGTGTTGTCGGTGGCGGTGTCGCTGGCCTGCTCATTGCCGCCACTCCTATTCAG 944
Query 710 GTTGTTGTTGGCAGTTTTATAACGAGTGAACAACAAGATCATCAGAAACCGAGGAAGCAA 769
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 945 GTTGTTGTTGGCAGTTTTATAACGAGTGATCAACAAGATCATCAGAAACCGAGGAAGCAA 1004
Query 770 AGAGTCGAGCATACCCCT-C--CA---A---C-G-G--TAA-CGTCATTG-CCTCCTCCT 814
|||||||||||| ||||| | || | | | | | | || || |||||||||
Sbjct 1005 AGAGTCGAGCATGCCCCTGCAGCAGTCATGTCAGTGCCTCCTCCTCCTTCTCCTCCTCCT 1064
Query 815 CCGGC---TTCAGTTTTTTCATCGACAAACCCAGAGAGAGAGCAGCCGCCATCCTCATTC 871
||||| ||| ||||| ||| |||||||||| || ||||||||||||||||| ||||||
Sbjct 1065 CCGGCGGCTTCTGTTTTCTCACCGACAAACCCGGACAGAGAGCAGCCGCCATCTTCATTC 1124
Query 872 GGCATCTCCAGCTGGACCAACGGACAGGACATGCCGAGAAACTCAGCCACTGACATCAAC 931
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GGTATCTCCAGCTGGACCAACGGACAGGACATGCCGAGAAACTCAGCCACTGACATCAAC 1184
Query 932 ATATCTTTACCAGCCGACTGAGTTTGAGTTTCCAGATGGAAGATTAGGTTTCAGATTAAC 991
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATATCTTTACCAGTCGACTGAGTTTGAGTTTCCAGATGGAAGATTAGGTTTCAGATTAAC 1244
Query 992 TCTCTACTGTCTGTACAATGGTTAGGAGGATTGTCGAGGCTGAATGCTACTGTACGCTTT 1051
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1245 TCTCTACTGTCTGTACAATGGTTAGGAGGATTGTTGAAGCTGAATGTTACTGTACGCTTT 1304
Query 1052 -CTTT-T---AGAACATG-CT-GAGCTTCTTCTACTTTTAGGGTAACTCTCTCT 1098
|||| | |||||| || |||||||||||||||||||||||||| |||||
Sbjct 1305 TCTTTATTTTAGAACACAACTTGAGCTTCTTCTACTTTTAGGGTAACTTTCTCT 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5