BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490550 Length=1109 Score E Sequences producing significant alignments: (Bits) Value AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription fact... 1435 0.0 AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcri... 195 1e-48 > AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription factor YABBY family protein | chr4:72552-75384 REVERSE LENGTH=1270 Length=1270 Score = 1435 bits (777), Expect = 0.0 Identities = 964/1046 (92%), Gaps = 45/1046 (4%) Strand=Plus/Plus Query 1 AGTGTCTCTTCATATTTACATAAATACAAAtctctctctctctctctctctctctctaaa 60 ||||||||||||||||||||||||| | | | |||||||||||||||||||||||| Sbjct 1 AGTGTCTCTTCATATTTACATAAAT--AGA----TATCTCTCTCTCTCTCTCTCTCTAAA 54 Query 61 ccacatcttcctctccaccgttctttctcttccctctctctctctctGGACTTCAACTTC 120 ||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| Sbjct 55 CCACATCTTCCTCTCCACCGTTCTTTCTCTT--C-CT-TCTCTCTCTGGACTTCAACTTC 110 Query 121 TGGAGAAGTACAAGACATTTATAAAGCACTGCTCATCACCCAACACT-AACACAATTGTC 179 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 111 TGGAGAAGTACAAGACATTTATAAAGTACTGCTCATCACCCAACACTAAACACAATTGTC 170 Query 180 AAAA-GGTGTGGTGGAAGGAGAATCTA-TTACT-TCT-ATC-TGGAT-A-TC-GATC-AG 230 |||| |||||||||||||||||||||| || || ||| | | | ||| | || ||| Sbjct 171 AAAAGGGTGTGGTGGAAGGAGAATCTACTT-CTATCTGAACATCGATCAGTCATATCTTT 229 Query 231 TCAATCAAATCAAA-CCCT-C-CTCTCTCTTACTCCtttttttttGTTTaaaaaagaaaa 287 |||||||||||||| |||| | |||||||||||||| |||||||||| || | | Sbjct 230 TCAATCAAATCAAAGCCCTCCTCTCTCTCTTACTCC---TTTTTTGTTT---TAA-ATCA 282 Query 288 agaaaaaGAGTCCATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACC 347 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 283 AGAAAAAGACTCCATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACC 342 Query 348 GGACCACTTCTCATCTTCGGAGCAGCTCTGTTACGTCCATTGCAGCTTCTGCGACACTGT 407 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 343 GGACCACTTCTCATCTACGGACCAGCTCTGTTACGTCCATTGCAGCTTCTGCGACACTGT 402 Query 408 CCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACCGTGACGGTGAGATGCGGCCA 467 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 403 CCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACGGTGACGGTCAGATGCGGCCA 462 Query 468 CTGTTCGAACCTTTTGTCGGTGACTGTAAGCATGAGAGCTCTTcttcttccctccgtttc 527 |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 463 CTGTTCGAACCTTTTGTCGGTGACCGTGAGCATGAGAGCTCTTCTTCTTCCATCCGTTTC 522 Query 528 caaccttggccattcctttttacctccccctcctcctccttctcctcccAATCTTTTGGA 587 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 523 CAACCTTGGCCATTCCTTTTTACCTCCCCCTCCTCCTCCTCCTCCTCCAAATCTTTTGGA 582 Query 588 GGAAATGCGAAGCGGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGGTGC 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 583 GGAAATGCGAAGCGGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGCTTC 642 Query 648 AGCTCACCACCCGAACGAATC-TTTGGTTATGCCGACTCGCAACGGTAG---AGTGGATC 703 ||||||||||||||||| | | |||||||||| ||||||||||||| || |||||||| Sbjct 643 AGCTCACCACCCGAACG-AGCATTTGGTTATGGCGACTCGCAACGGAAGATCAGTGGATC 701 Query 704 ATGTGCAAGAGATGCCTCGG---CCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAG 760 || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 702 ATCTACAAGAGATGCCTCGGCCACCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAG 761 Query 761 TACCATCTGCATACAACCGATTCATCAAGGAGGAGATCCAACGTATAAAGGCAGGCAACC 820 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 762 TACCATCTGCATACAACCGATTCATCAAAGAGGAGATCCAACGTATAAAGGCAGGCAACC 821 Query 821 CTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTC 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 CTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTC 881 Query 881 ACATACACTTTGGTCTCATGGCTGATCATCCTCCCACCAAGAAGGCTAACGTGCGCCAAC 940 ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 882 ACATACACTTTGGACTCATGGCTGACCATCCTCCCACGAAGAAGGCTAACGTGCGCCAAC 941 Query 941 AGGAAGGAGAGGATTCGATGATGGGAAGAGATCGAGAAGGCTTTTACGGCTCAACTGCCA 1000 |||||||||||||| ||||||||||||||| || || |||||||| ||| |||||| Sbjct 942 AGGAAGGAGAGGATGGGATGATGGGAAGAGA---AG--GG-TTTTACGGTTCAGCTGCCA 995 Query 1001 ACGTTGGGGTGACCCATAACTAGCTA 1026 ||||||||||| |||||||||||||| Sbjct 996 ACGTTGGGGTGGCCCATAACTAGCTA 1021 > AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcription factor YABBY family protein | chr2:18628265-18630712 REVERSE LENGTH=1035 Length=1035 Score = 195 bits (105), Expect = 1e-48 Identities = 182/219 (83%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 739 CCC-CCAGAGAAGCGACAAAGAGTACCATCTGCATACAACCGATTCATCAAGGAGGAGAT 797 ||| |||||||| |||| ||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 568 CCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAACCGATTCATCAAGGAGGAGAT 627 Query 798 CCAACGTAT-AAAGGCAGGCAACCCTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTG 856 ||||||||| |||| | || || |||||||| ||||||||||||||||| |||||||||| Sbjct 628 CCAACGTATCAAAG-CTGGTAATCCTGATATAAGCCACAGAGAAGCCTTTAGTGCTGCTG 686 Query 857 CCAAAAACTGGGCTCATTTCCCTCACATACACTTTGGTCTCATGGCTGATCA-TCCTCCC 915 |||| || ||||| || ||||| ||||||||||| || ||| || | || || || ||| Sbjct 687 CCAAGAATTGGGCCCACTTCCCCCACATACACTTCGGGCTCGTGCCAGA-CAATCAACCC 745 Query 916 ACCAAGAAGGCTAACGTGCGCCAACAGGAAGGAGAGGAT 954 ||||| | ||| ||| ||||||||| ||||||||| Sbjct 746 GTGAAGAAAACCAACATGCCCCAACAGGAGGGAGAGGAT 784 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54367190235 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5