BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490555
Length=2043
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00150.1 | Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcr... 3077 0.0
> AT4G00150.1 | Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcription
factor | chr4:57199-59286 REVERSE LENGTH=2088
Length=2088
Score = 3077 bits (1666), Expect = 0.0
Identities = 1956/2088 (94%), Gaps = 52/2088 (2%)
Strand=Plus/Plus
Query 1 GCAAAATAATAGGAAACGGAAATAAGAGAGAAAAAGAAAGGAGGAAGCCCACTTTGCCAC 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 GCAAAATGATAGGAAACGGAAATAAGAGAGAAAAAGAAAGGAGGAAGCCCACTTTGCCAC 67
Query 61 TTTAATATCTTGCACGCATCCAATATaccacaccacaccaca-c-c-acaac-aacaa-c 115
||||||||||||||||||||||||||||| |||||||||||| | | ||||| || ||
Sbjct 68 TTTAATATCTTGCACGCATCCAATATACCTCACCACACCACATCACAACAACGAAGAAGA 127
Query 116 a-aagaagaagaagagctccaagaagacaaatacacGATTTTTGATCGTCTGCAATGCCC 174
| |||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 128 AGAAGAAGAAGAAGAGCTTCAAGAAGACAAATACACTATTTTTTATCGTCTGCAATGCCC 187
Query 175 TTACCCTTTGAAGAGTTTCAAGGGAAGGGGATTTCTTGTTTCTCTTCTTTCTCGTCTTCC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TTACCCTTTGAAGAGTTTCAAGGGAAGGGGATTTCTTGTTTCTCTTCTTTCTCGTCTTCC 247
Query 235 TTCCCCCAACCA-C--CGTCTCCGCTTTTGAGCCGCCGCAAAATAAGAGGCGGCgaagaa 291
|||||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 248 TTCCCCCAACCACCGTCGTCTCCGCTTTTGAGCCACCGCAAAGCAAGAGGCGGCGAAGAA 307
Query 292 gaagaggaagaagaagTTCCCGCGGCGGAGCCTACCTCTGTTCTGGACGCCCTCATAAGC 351
||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 308 GAAGA-G--GAAGAAGTTCCCGCGGCGGAGCCTACCTCTGTTCTGGACTCCCTCATAAGC 364
Query 352 CCAACATCCTCCTCCACGGTGTCTTCCTCTCACGGCGGAAACAGCGCCGTCGGAGGCGGC 411
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CCAACCTCTTCCTCCACGGTGTCTTCCTCTCACGGCGGAAACAGCGCCGTCGGAGGCGGC 424
Query 412 GGCGACGCCACCACCGATGAGCAATGCGGAACCATTGGGTTGGGTGATT--G-GGAGCAA 468
|||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 425 GGCGACGCCACCACCGATGAGCAATGCGGAGCCATTGGGTTGGGTGATTGGGAGGAGCAA 484
Query 469 GTTCCTCATGACCACGAACAGAGCATTCTCAGACTCATCATGGGAGATTCCACAGATCCC 528
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 485 GTTCCTCATGACCACGAACAGAGCATTCTCGGACTCATCATGGGAGATTCCACAGATCCC 544
Query 529 TCTCTTGAACTCAACAGCATTCTCCAAACCTCTCCCACCTTTCACGACTCTGACTACTCA 588
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 545 TCTCTTGAACTCAACAGCATTCTCCAAACATCTCCCACCTTCCACGACTCTGACTACTCA 604
Query 589 TCACCCGGTTTCGGAGTCGTCGATACCGGCTTCGGTTTAGACCACCACTCAGTTCCGCCG 648
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 605 TCACCCGGTTTCGGAGTCGTCGACACCGGCTTCGGTTTAGACCACCACTCTGTTCCGCCG 664
Query 649 TCGCACGTCCCCGGCCTTCTGATCAACCAAACTCAAACTCACTACACACAGAATCCTGCG 708
|| || || |||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 665 TCACATGTTTCCGGTCTTCTGATCAACCAAAGTCAAACCCACTACACACAGAATCCTGCG 724
Query 709 GCCATCTTCTACGGCCACCACCACCATACACCTCCGCCGGCAAAGCGGCTCAACCCTGGT 768
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GCTATCTTCTACGGCCACCACCACCATACACCTCCGCCGGCAAAGCGGCTCAACCCTGGT 784
Query 769 CCCGTGGGGATAACAGAGCAGCTGGTTAAGGCAGCAGAGGTCATAGAGAGCGACACGTGT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CCCGTGGGGATAACAGAGCAGCTGGTTAAGGCAGCAGAGGTCATAGAGAGCGACACGTGT 844
Query 829 CTAGCTCAGGGGATATTGGCGCGGCTCAATCAACAGCTCTCTTCTCCCGTCGGGAAGCCA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CTAGCTCAGGGGATATTGGCGCGGCTCAATCAACAGCTCTCTTCTCCCGTCGGGAAGCCA 904
Query 889 TTAGAAAGAGCAGCTTTTTACTTCAAAGAAGCTCTCAACAATCTCCTCCACAACGTCTCC 948
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 905 TTAGAAAGAGCAGCTTTTTACTTCAAAGAAGCTCTCAATAATCTCCTTCACAACGTCTCC 964
Query 949 CAAACCCTAAACCCTTATTCCCTCATCTTCAAGATCGCTGCTTACAAATCCTTCTCAGAG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 CAAACCCTAAACCCTTATTCCCTCATCTTCAAGATCGCTGCTTACAAATCCTTCTCAGAG 1024
Query 1009 ATCTCTCCCGTTCTCCAGTTCGCCAACTTCACCTCCAACCAAGCCCTCTTAGAGTCCTTC 1068
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1025 ATCTCTCCCGTTCTTCAGTTCGCCAACTTTACCTCCAACCAAGCCCTCTTAGAGTCCTTC 1084
Query 1069 CATGGCTTCCACCGTCTCCACATCATCGACTTCGACATCGGCTACGGTGGCCAATGGGCC 1128
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1085 CATGGCTTCCACCGTCTCCACATCATCGACTTCGATATCGGCTACGGTGGCCAATGGGCT 1144
Query 1129 TCTCTCATGCAGGAGCTCGTTCTCCGCGACAACGCCGCTCCTCTCTCCCTCAAGATCACC 1188
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 TCCCTCATGCAAGAGCTTGTTCTCCGCGACAACGCCGCTCCTCTCTCCCTCAAGATCACC 1204
Query 1189 GTTTTCGCTTCTCCGGGGAACCACGACCAGCTTGAACTTGGCTTCACTCAAGACAATCTC 1248
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1205 GTTTTCGCTTCTCCGGCGAACCACGACCAGCTCGAACTTGGCTTCACTCAAGACAACCTC 1264
Query 1249 AAGCACTTCGCCTCTGAGATCAACATCTCCCTTGACATCCAAGTTCTT-AGCTTAGACCT 1307
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1265 AAGCACTTCGCCTCTGAGATCAACATCTCCCTTGACATCCAAGTT-TTGAGCTTAGACCT 1323
Query 1308 CCTCGGCTCCATCTCATGGCCTAACTCGTCGGAGAAAGAAGCTGTCGCCGTTAACATCTC 1367
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 CCTCGGCTCCATCTCGTGGCCTAACTCGTCGGAGAAAGAAGCTGTCGCCGTTAACATCTC 1383
Query 1368 CGCCGCGTCCTTCTCGCACCTCCCTTTGGTCCTCCGTTTCGTGAAGCATCTATCTCCGAC 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 CGCCGCGTCCTTCTCGCACCTCCCTTTGGTCCTCCGTTTCGTGAAGCATCTATCTCCGAC 1443
Query 1428 GATCATCGTCTGCTCCGACAGAGGATGCGAGAGGACGGATCTTCCCTTCCCGCAACAGGT 1487
|||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |
Sbjct 1444 GATCATCGTCTGCTCCGACAGAGGATGCGAGAGGACGGATCTGCCCTTCTCTCAACAGCT 1503
Query 1488 CGCACACTCGCTGCACTCACACGCCGCTCTCCTCGAATCCCTCGACGCCGTCAACGCCAA 1547
||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1504 CGCCCACTCGCTGCACTCACACACCGCTCTCTTCGAATCCCTCGACGCCGTCAACGCCAA 1563
Query 1548 CCTCGACGCAATGCAGAAGATCGAGAGGTTTCTGATACAGCCGGAGATAGAGAAGCTGGT 1607
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1564 CCTCGACGCAATGCAGAAGATCGAGAGGTTTCTTATACAGCCGGAGATAGAGAAGCTGGT 1623
Query 1608 GTTGGATCGTAGCCGTTCGATCGAGAGACCGATGATGACGTGGCAAACGATGTTTCTGCA 1667
|||||||||||||||| |||| || || |||||||||||||||||| |||||||||| ||
Sbjct 1624 GTTGGATCGTAGCCGTCCGATAGAAAGGCCGATGATGACGTGGCAAGCGATGTTTCTACA 1683
Query 1668 GATGGGGTTCTCACCGGTGACGCACAGTAACTTCACGGAGTCTCAGGCGGAGTGTTTGGT 1727
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1684 GATGGGTTTCTCACCGGTGACGCACAGTAACTTCACGGAGTCTCAAGCCGAGTGTTTAGT 1743
Query 1728 TCAACGGACGCCGGTGAGAGGCTTTCACGTCGAGAAGAAACATAACTCTCTTCTCCTCTG 1787
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1744 CCAACGGACGCCAGTGAGAGGCTTTCACGTCGAGAAGAAACATAACTCACTTCTCCTATG 1803
Query 1788 TTGGCAAAGGACAGAACTCGTCGGAGTTTCCGCATGGAGATGTCGCTCCTCCTGACT-CC 1846
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1804 TTGGCAAAGGACAGAACTCGTCGGAGTTTCAGCATGGAGATGTCGCTCCTCCTGATTTCC 1863
Query 1847 GCCGGAGATTCAATTATTACAAATAA-ATGA-CAT-A-TT---TTTAG-TT---TC-CGA 1894
|||||| ||||||||||| ||| || || | | | || |||| || | | |
Sbjct 1864 ACCGGAGTTTCAATTATTAAAAA-AATATTTTCCTTAATTCAATTTATCTTAAATGACAA 1922
Query 1895 -TTTT-A-------ATT--ATTTTGCTCAGTGCGATGGATTTT-AAATTTAAGTTTCACA 1942
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1923 ATTTTTAGTTTCTGATTTTATTTTGCTCAGTGCGATGGATTTTTAAATTTAAGTTTCACA 1982
Query 1943 CAAATTTATAAATTTT-GTGAAATTAGT-AATTAATTGTTTGATTATCAAACAATTATAG 2000
||||| |||||||||| |||| | ||| |||||||||| ||||||||||||| |||| |
Sbjct 1983 CAAATATATAAATTTTTGTGAGA--AGTTAATTAATTGTCTGATTATCAAACACTTATTG 2040
Query 2001 TATAACACATTCAAT-T-TC--A-TTGTGGGGATTATTTTTGGTCGAC 2043
||||||||||||||| | | | |||||||||||||||||| |||||
Sbjct 2041 TATAACACATTCAATATATATTAATTGTGGGGATTATTTTTGATCGAC 2088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101254499265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5