BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490564
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00030.1 | Symbols: | Plastid-lipid associated protein PAP ... 1016 0.0
> AT4G00030.1 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr4:13527-14413 FORWARD LENGTH=724
Length=724
Score = 1016 bits (550), Expect = 0.0
Identities = 623/657 (95%), Gaps = 10/657 (2%)
Strand=Plus/Plus
Query 1 AACCATGGAAATTGCAATTTGCAAACATGGCGCTCGCGCTCT--C-GTCGGCATGTCCTC 57
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 13 AACCATGGAAATTGCAATTTGCAAACATGGCGCTCGCGCTCTCGCTGTCGGCATGT--T- 69
Query 58 CTCCTCCACTCCGCCGCAGTCGTCGTGCCGGTTTTCGAACAAGCTGCTCGATCTTCGCGA 117
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 70 CTCCTCCACTCCGCCGCACTCGTCGTGCCGGTTTTCGAACAAGCTGCTCGATCTTCGCGA 129
Query 118 ATCCAGCACAGCGAGCCAAGCGGAAGCTGCTTGAGCTGATCTCCGAGGAGGATCGAGGTG 177
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 130 ATCCAGCACAGCGAGCCAAGAGGAAGCTGCTTGAGCTGATCTCCGAGGAGGATCGAGGTC 189
Query 178 TGAGAACCCAGAAAGACGCCACGAAGCGAGATGCAATCGTGGATGCCATCGAATCCATGG 237
||||||||||||||||| ||| ||||||||||| ||||||| | |||||||||||||||
Sbjct 190 TGAGAACCCAGAAAGACCCCAAGAAGCGAGATGAAATCGTGAACGCCATCGAATCCATGA 249
Query 238 CGGTTATCGGAG-GCAGCTCCATCACCACGGGA-GAATCTCTATCTTCCACTTGGCGGCT 295
|||||||||| | |||||||||||||||| || || ||||||||| |||| ||||||||
Sbjct 250 CGGTTATCGG-GCGCAGCTCCATCACCAC-AGACGACTCTCTATCTGCCACGTGGCGGCT 307
Query 296 CCTGTGGACGACGGAGAAGGAACAGCTATTCATCATAGAAAAGGCGGGCTTGTTTGGGAC 355
| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 308 CTTGTGGACGACGGAGAAGGAACAGTTGTTCATCATAGAAAAGGCAGGCTTGTTTGGGAC 367
Query 356 GACCGCCGGAGACGTTTTGCAGGTGATCGATGTTAATAAACGGATCCTCAATAACGTCAT 415
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 368 GACCGCCGGAGACGTTTTGCAGGTGATCGATGTGAATAAACGGATCCTCAATAACGTCAT 427
Query 416 CACTTTCCCGCCGGACGGAGTTTTCTTCGTACGCTCTGATATCGAGATCGCTTCCCCGCA 475
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 428 CACTTTCCCGCCGGACGGGGTTTTCTTCGTACGCTCCGATATCGATATCGCTTCCCCGCA 487
Query 476 GAGAGTCAATTTCAGATTCAATAGTGCGGTGTTGAGAGCGAAGAACTGGGAGATCCCACT 535
|||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct 488 GAGAGTCAATTTCAGATTCAATAGTGCGGTATTGAGAGGGAAGAACTGGGAGCTCCCACT 547
Query 536 GCCACCATTTGGGAAGGGCTGGTTTGAGAATGTGTATATGGACGGTGAGATCAGAGTGGC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GCCACCATTTGGGAAGGGCTGGTTTGAGAATGTGTATATGGACGGTGAGATCAGAGTGGC 607
Query 596 CAAGGACATCAGAGGAGACTACTTAATTGTTGATCGTGCTCCTTATAACTGGACTGA 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 CAAGGACATCAGAGGAGACTACTTAATTGTTGATCGTGCTCCTTATAACTGGACTGA 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5