BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490565
Length=499
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01710.1 | Symbols: CRK, ARPC5 | ARP2/3 complex 16 kDa subun... 682 0.0
AT5G65274.1 | Symbols: | ARP2/3 complex 16 kDa subunit (p16-Ar... 479 1e-134
AT4G00026.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 80.5 1e-14
> AT4G01710.1 | Symbols: CRK, ARPC5 | ARP2/3 complex 16 kDa subunit
(p16-Arc) | chr4:735753-736604 FORWARD LENGTH=576
Length=576
Score = 682 bits (369), Expect = 0.0
Identities = 408/427 (96%), Gaps = 1/427 (0%)
Strand=Plus/Plus
Query 2 GAATGGCAGAATTCGTTGAGGCTGATAATGCAGAAGCAATAATCGCGAGGATCGAAACCA 61
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 22 GAATGGCAGAATTCGTTGAAGCTGATAACGCAGAAGCAATAATCGCGAGGATCGAAACCA 81
Query 62 AATCGCGGAAGATTGAAAGCTTACTCAAACAGTACAAACATGTCGAAGCTTTGAAAACGG 121
||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 82 AATCGAGGAAGATTGAAAGCCTACTCAAACAGTACAAACATGTAGAAGCTTTGAAAACGG 141
Query 122 CTCTTGAAGGTTCGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CTCTTGAAGGTTCGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAG 201
Query 182 TTGTGCACAGAGCTATAATGGCCATAAAGGATATTGACGGAATGCTCAATGCTCTTGATG 241
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 202 TTGTGCACAGAGCTTTAATGGCCATTAAGGATATTGACGGAATGCTCAATGCTCTTGATG 261
Query 242 CCGAATATTACGACATTCTCATGAAGTACTTGTACAGAGGCCTTTCTACTGGCGACCGAC 301
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 262 TCGAATATTACGACATTCTCATGAAGTACTTGTACAGAGGACTTTCTACTGGGGACCGAC 321
Query 302 CCACCTGCGATCAGTGCTTGAAGATTCATGAGAAACTCACAGAGAGAGCTGGTCTCGGTT 361
||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||
Sbjct 322 CCACCTGCGATCAGTGCCTGAAGATTCACGAGAAACTCACTGAGAGAGCTGGTCTCGGTT 381
Query 362 GCATTCTCCGCTGTCTTACTGATACCATAAACACCGTTTGATCCATGATTGCCTCTAATG 421
|||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||| |||
Sbjct 382 GCATTCTCCGATGTCTTACTGATACCATCAACACCGTTTGATCCATCATTCCCTCTTATG 441
Query 422 TAT-ATT 427
||| |||
Sbjct 442 TATTATT 448
> AT5G65274.1 | Symbols: | ARP2/3 complex 16 kDa subunit (p16-Arc)
| chr5:26085300-26085960 FORWARD LENGTH=408
Length=408
Score = 479 bits (259), Expect = 1e-134
Identities = 352/397 (89%), Gaps = 6/397 (2%)
Strand=Plus/Plus
Query 7 GCAGAATTCGTTGAGGCTGATAATGCAGAAGCAATAATCGCGAGGATCGAAACCAAATCG 66
|||| ||| ||||| |||||||||||||| | |||||| || ||||||||||||||||||
Sbjct 13 GCAGCATTTGTTGAAGCTGATAATGCAGAGGAAATAATGGCAAGGATCGAAACCAAATCG 72
Query 67 CGGAAGATTGAAAGCTTACTCAAACAGTACAAACATGTCGAAGCT-TTGAAAACGGCTCT 125
| |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||
Sbjct 73 CAGAAGATTGAAAGCTTACTCAAACACTACAAACATGTCGAAGCTCTT-AAAACGGCTCT 131
Query 126 TGAAGGTTCGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAGTTGT 185
||| |||||||| || ||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 132 TGATGGTTCGCCACCTAAAACTCTCGACGAACGTTGCAAGTCAGCTAATTGGATAGTTGT 191
Query 186 GCACAGAGCTATAATGGCCATAAAGGATATTGACGGAATGCTCAATGCTCTTGA-TGCCG 244
|||||||||||| ||||| ||||||||||| || |||||| | ||| ||||| | |||||
Sbjct 192 GCACAGAGCTATCATGGCGATAAAGGATATCGAAGGAATGTTAAATTCTCTT-ACTGCCG 250
Query 245 AATATTACGACATTCTCATGAAGTACTTGTACAGAGGCCTTTCTACTGGCGACCGA-CCC 303
| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||| || |||
Sbjct 251 AGTATTACGACATTCTCATGAAGTACTTGTACAGAGGTCTTTCGACTGGTGAC-GAACCC 309
Query 304 ACCTGCGATCAGTGCTTGAAGATTCATGAGAAACTCACAGAGAGAGCTGGTCTCGGTTGC 363
|| ||||| ||||| |||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 310 ACATGCGAACAGTGTTTGATGATTCACGAGAAACTAACAGAGAGAGCTGGTCTCGGTTGC 369
Query 364 ATTCTCCGCTGTCTTACTGATACCATAAACACCGTTT 400
|||||||| ||||| | |||||| | || |||||||
Sbjct 370 ATTCTCCGTTGTCTGAGTGATACTACCAATACCGTTT 406
> AT4G00026.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro
DOMAIN/s: Mitochondrial inner membrane translocase complex,
subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink). | chr4:11355-13359
REVERSE LENGTH=1163
Length=1163
Score = 80.5 bits (43), Expect = 1e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 457 CAGTTTAGACTTGTTTTTCAATTAGCAAACAGTTGCTTGATAA 499
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 CAGTTTAGACTTGTTTTTCAATTAGCAAACAGTTGCTTGATAA 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23810985678
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5