BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490566 Length=1854 Score E Sequences producing significant alignments: (Bits) Value AT1G05940.1 | Symbols: CAT9 | cationic amino acid transporter 9... 2957 0.0 > AT1G05940.1 | Symbols: CAT9 | cationic amino acid transporter 9 | chr1:1801162-1803984 REVERSE LENGTH=1955 Length=1955 Score = 2957 bits (1601), Expect = 0.0 Identities = 1716/1772 (97%), Gaps = 6/1772 (0%) Strand=Plus/Plus Query 2 CAATCTTCAACTCTCTAATTCAAGTTTCCATGGGAGGCCACGAAGGTTTCAGCAACCAAC 61 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 14 CAATCTTCAACTCTCAAATTGAAGTTTCCATGGGAGGCCACGAAGGTTTCAGCAACCAAC 73 Query 62 GCCTCTCCTCCGCCACATGGTTCTCTCATTTCCGTGCTTCAGCTCTCCGATCTAAATCTC 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 74 GCCTCTCCTCCGCCACATGGTTCTCTCATTTCCGTGCTTCAGCTCTCCGATCTAAATCAC 133 Query 122 TGCCCCCTCCGTCCTCGCAGACTGCCGTTCGCTCCACCTCCGGCGACTCTCTTGTTCGTC 181 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 134 TGCCCCCTCCGTCCTCGCAGACTGCCGTTCGCTCCACCTCTGGCGACTCTCTGGTTCGTC 193 Query 182 GCCTCGGCCTTTTCGACCTCGTACTGTTGGGCGTCGGCGCTTCCATCGGCGCCGGTGTCT 241 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 194 GCCTCGGCCTTTTCGACCTCATACTGTTGGGCGTCGGCGCTTCCATCGGCGCCGGTGTCT 253 Query 242 TCGTCGTTACCGGAACCGTCGCTCGCGATGCTGGACCTGGAGTCACGATCAGCTTCTTGC 301 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 254 TCGTCGTCACCGGAACCGTCGCTCGCGATGCTGGACCTGGAGTCACAATCAGCTTCTTGC 313 Query 302 TAGCTGGAGCATCGTGTGTGTTGAACGCTCTCTGTTATGCTGAACTTGCATCTCGTTTCC 361 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 314 TAGCTGGAGCATCGTGTGTGTTGAACGCTCTCTGTTATGCTGAACTTTCATCTCGTTTCC 373 Query 362 CTGCTGTTGTTGGTGGAGCTTACATGTACTCGTATTCAGCTTTCAATGAGATCACAGCTT 421 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 374 CTGCTGTTGTTGGTGGAGCTTACATGTACTCTTACTCAGCTTTCAATGAGATCACAGCTT 433 Query 422 TTCTTGTTTTCGTACAACTCATGCTTGATTATCATATTGGCGCCGCTAGTATCTCCCGTA 481 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 434 TTCTTGTTTTCGTTCAACTCATGCTTGACTATCATATTGGCGCCGCTAGTATCTCCCGTA 493 Query 482 GCTTGGCAAGCTATGCTGTTGCTCTTCTTGAGCTTTTTCCAGCCCTCAAGGGCTCTATTC 541 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 494 GCTTGGCCAGCTATGCTGTTGCTCTTCTTGAGCTTTTTCCAGCCCTCAAGGGCTCTATTC 553 Query 542 CTCTCTGGATGGGAAGCGGCGAAGAGCTGC-TAGGAGGGCTTCTCTCTTTAAATATCTTG 600 |||||||||||||||||||| ||||||| | | ||||||||||||||||| ||||| ||| Sbjct 554 CTCTCTGGATGGGAAGCGGCAAAGAGCT-CTTGGGAGGGCTTCTCTCTTTGAATATTTTG 612 Query 601 GCTCCCATTTTACTTGCTCTCTTGACCCTTGTTCTATGCCAAGGTGTGCGAGAATCTTCC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 613 GCTCCCATTTTACTTGCTCTCTTGACCCTTGTTCTATGCCAAGGTGTGCGAGAATCTTCC 672 Query 661 GCTGTCAACTCCGTTATGACTGCTACTAAGGTCGTGATTGTTCTCGTTGTGATTTGTGCT 720 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 673 GCTGTCAACTCCGTTATGACTGCTACTAAGGTCGTGATCGTTCTCGTTGTGATTTGTGCC 732 Query 721 GGTGCTTTTGAAATTGATGTAGCAAATTGGTCTCCTTTTGCGCCTAATGGTTTTAAAGCA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 733 GGTGCTTTTGAAATTGATGTAGCAAATTGGTCTCCTTTTGCGCCTAATGGTTTTAAAGCA 792 Query 781 GTTCTGACTGGAGCTACTGTAGTCtttttttCATATGTTGGATTTGATGCGGTTGCTAAT 840 ||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct 793 GTTCTCACTGGAGCTACTGTTGTCTTCTTTTCATATGTTGGATTTGATGCAGTTGCTAAT 852 Query 841 TCTGCTGAAGAATCAAAGAACCCTCAGCGTGATCTGCCAATCGGAATTATGGGAAGCCTT 900 |||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||| Sbjct 853 TCTGCTGAAGAATCGAAGAACCCTCAGCGCGATTTGCCAATCGGAATTATGGGGAGCCTT 912 Query 901 CTGGTTTGTATCTCGCTCTATATTGGCGTATGTTTAGTGCTCACCGGGATGGTCCCTTTT 960 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 913 CTGGTTTGTATCTCGCTGTATATTGGCGTATGTTTGGTGCTCACCGGGATGGTCCCTTTT 972 Query 961 AGCCTCCTCAGCGAAGATGCTCCTTTAGCTGAAGCCTTTTCATCAAAGGGTATGAAGTTC 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 AGCCTCCTCAGCGAAGATGCTCCTTTAGCTGAAGCCTTTTCATCAAAGGGTATGAAGTTC 1032 Query 1021 GTCTCAGTCTTAATCAGTATCGGTGCTGTTGCTGGACTCACAACTACTCTGCTTGTTGGT 1080 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1033 GTCTCAATCTTAATCAGTATTGGTGCTGTTGCTGGACTCACAACTACTCTGCTTGTTGGT 1092 Query 1081 CTTTATGTTCAGTCCAGGTTATATCTGGGACTTGGAAGGGATGGTCTATTGCCTTCAATC 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1093 CTTTATGTTCAGTCCAGGTTATATCTGGGACTTGGAAGGGATGGTCTATTGCCTTCAATC 1152 Query 1141 TTTTCCAGAATACACCCAACTCTCCATACACCTCTTCATTCTCAAATCTGGTGCGGCATT 1200 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1153 TTTTCCAGAATACACCCAACTCTTCATACACCTCTTCATTCTCAAATCTGGTGCGGCATT 1212 Query 1201 GTAGCTG-CGGTTTTAGCTGGCATATTTAATGTACATAGTCTTTCCCATATTCTGTCCGT 1259 ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1213 GTAGCTGGCG-TTTTAGCTGGCATATTTAATGTACATAGTCTTTCCCATATTCTGTCTGT 1271 Query 1260 TGGTACATTGACTGGGTATTCAGTTGTTGCGGCTTGTGTTGTGGCATTGAGACTGAATGA 1319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1272 TGGTACATTGACTGGGTATTCAGTTGTTGCGGCTTGTGTTGTGGCATTGAGACTGAATGA 1331 Query 1320 TAAAAAAGAAAGAGAGTCCG-CCAATAGATGGACATCAAGTTGGCAGGAAGGCGTCATTT 1378 ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1332 TAAAAAAGATAGAGAGTC-GTCCAATAGATGGACATCAAGTTGGCAGGAAGGCGTCATTT 1390 Query 1379 GCCTTGTTATAATTGCATGCAGTGGTTTTGGTGCTGGCATATTTTACCGTTTCAGTGCTT 1438 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1391 GCCTTGTTATAATTGCATGCAGTGGTTTTGGTGCTGGCGTATTTTACCGTTTCAGTGCTT 1450 Query 1439 CACTTATATTTATTCTCCTCTCAGTTGGTGTGGCAGTTGTTGCTTCAGCAGTTCTTCATT 1498 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1451 CAGTTATATTTATTCTCCTCTCAGTTGGTGTGGCAGTTGTTGCTTCAGCAGTTCTTCATT 1510 Query 1499 ATCGCCAAGCTTATGCTCAGTCTCTAGGTTCTGGGTTTAGCTGTCCTGGTGTACCCATTG 1558 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1511 ATCGCCAAGCTTATGCTCTGCCTCTAGGTTCTGGGTTTAGCTGTCCTGGTGTACCCATTG 1570 Query 1559 TGCCATGCGTTTGCATTTTCTTCAACATCTTCTTATTTGCTCAGTTGCATTATGAAGCAT 1618 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1571 TGCCATCCGTTTGCATTTTCTTCAACATCTTCTTATTTGCTCAGTTGCATTATGAAGCAT 1630 Query 1619 GGATAAGATTTGTTGTAGTCAGTGTGCTTGCAACTGCCGTTTATGCTTTGTATGGGCAGT 1678 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1631 GGATAAGATTTGTTGTTGTCAGTGTGCTTGCAACTGCCGTTTATGCCTTGTATGGGCAGT 1690 Query 1679 ACCACGCAGATACAAGCACGCTGGTTTATCAGAGGGCACCTGAAACTGAAAGCGACTCGT 1738 ||||||||||| | |||| | ||| ||||||||||||||||||||||||||||||| | | Sbjct 1691 ACCACGCAGATCCGAGCATGTTGGATTATCAGAGGGCACCTGAAACTGAAAGCGACGCTT 1750 Query 1739 AGTAATGCTACATTATAGTTGTGTTGCTTAAA 1770 ||||||||||||||||||||||||| |||||| Sbjct 1751 AGTAATGCTACATTATAGTTGTGTTACTTAAA 1782 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91766596260 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5