BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490572 Length=1463 Score E Sequences producing significant alignments: (Bits) Value AT4G38150.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1862 0.0 > AT4G38150.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:17900609-17902160 REVERSE LENGTH=1552 Length=1552 Score = 1862 bits (1008), Expect = 0.0 Identities = 1281/1402 (91%), Gaps = 62/1402 (4%) Strand=Plus/Plus Query 1 TTTTCGAATCAGCGGCAGATAACGATGGTGTCC-TCCTCGAAAGCCGTCGTTTTTGCGAG 59 |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| || Sbjct 18 TTTTCGAATCAGCGGCAGATAACGATGGTG-CCTTCCTCCAAAGCCGTCGTTTTTGCAAG 76 Query 60 GCAGATGGCGAAGCAGATTCGTGTTACGACGCCGTCGATTTCCGCAACACGCTTTCTCTC 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 77 GCAGATGGCGAAGCAGATTCGTGTTACGACGCCGTCGATGTCCGCAACACGCTTTCTCTC 136 Query 120 GACGGGCGACAAAGGTCAAG-A-A-AAGCAGCAGAACCCTCCAGAGCCCTTACCCAACAG 176 ||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 137 AACGGGCGACAATGGTCAAGTAGACGAGCAGCAGAACCCTCCAGAGCCCTTACCCAACAG 196 Query 177 ACCCTTGCGAGGTGAGAGATCTTCCAACTCTCACAGAGAACCACCTGCTAGACAAGCCCA 236 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 197 ACCCTTGCGAGGGGAGAGATCTTCCAACTCTCACAGAGAACCACCCGCTAGACAAGCCCA 256 Query 237 CGACCTTGGAAAGATTGATAATACTCTGTCTGACGATGGCTTCCTCGAACAGTTCAAGCT 296 | |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 257 CAACCTTGGAAAGAGTGATACTACTCTGTCTGACGATGGCTTCCTCGAACAGTTCAAGCT 316 Query 297 TGGAGTCAATCAGGATTTACAGGAAACCCCCAAACCGGAACAATACCCACAGGACCCCTT 356 ||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||| Sbjct 317 TGGAGTCAATCAGGATTCACGGGAAACCCCCAAACCGGAACAATACCCGCAGGAGCCCTT 376 Query 357 ACTGCCGCCTGAAGATTCCGATGAGATCTTCAAGAAAATGAAGGAAGGAGGTCTCATCCC 416 || ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 377 ACCGCCGCCTGAGGATTCCGATGAGATCTTCAAGAAGATGAAGGAAGGAGGTCTCATCCC 436 Query 417 TAACGCGGTCGCCATGCTTGACGGCCTCTGCAAAGATGGGCTTGTACAGGAGGCCATGAA 476 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 437 TAACGCCGTCGCCATGCTTGACGGCCTCTGCAAAGATGGGCTTGTACAAGAGGCCATGAA 496 Query 477 GCTTTTCGGATTGATGCGTGACAAGGGTACAATCCCTGAGGTCGTTATCTACACTGCTGT 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 GCTTTTCGGATTGATGCGTGACAAGGGTACAATCCCTGAGGTCGTTATCTACACTGCTGT 556 Query 537 CGTTGAGGGCTTTTGCAAGGCTCATAAAATTGAAGACGCTAAGAGGATTTTCAGGAAAAT 596 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 557 CGTTGAGGCCTTTTGCAAGGCTCATAAAATTGAAGACGCTAAGAGGATTTTCAGGAAAAT 616 Query 597 GCAGACCAATGGGATTGCTCCAAATGCCTTCAGCTATGGTGTGTTGGTTCAGGGATTGTA 656 ||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 617 GCAGAACAATGGGATTGCCCCTAATGCCTTCAGCTACGGTGTGTTGGTTCAGGGATTGTA 676 Query 657 TAATTGCAACATGCTTGACGATGCTGTTACTTTCTGTTGTGAGATGCTCGAGTCTGGTCA 716 |||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| Sbjct 677 TAATTGCAACATGCTTGACGATGCTGTTGCTTTCTGTAGTGAGATGCTTGAGTCTGGTCA 736 Query 717 CTCTCCCAACATCCCCACTTTCGTTGGATTGGTTGATGCCTTGTGCAGAGAAAAGGGCGT 776 |||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||| || Sbjct 737 CTCTCCTAACGTCCCCACTTTCGTTGAATTGGTTGATGCCTTGTGCAGAGTAAAGGGGGT 796 Query 777 TGAACAAGCCCAGTCCGCTATTGATGGCTTAAACCAAAAAGGATTTGCTC-TTAATGTTA 835 ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| Sbjct 797 TGAACAAGCCCAGTCCGCTATTGATACCTTAAACCAAAAAGGATTTGC-CGTTAATGTTA 855 Query 836 AGGCTGTCAAGGATTTCATGGATAAAAGGGCTCCATTTCCGTCTTTGGCTTGGGAAGCCA 895 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 856 AGGCTGTCAAGGAGTTCATGGATAAAAGGGCTCCATTTCCGTCTTTGGCTTGGGAAGCCA 915 Query 896 TTTTCAAGAAGAAACCAACCGACAAACCCTTGTGATTTTCCTATTTACTTACGCAGTGCT 955 | |||||||||||||||||||| |||||||| |||||| | ||||||||||||| Sbjct 916 TCTTCAAGAAGAAACCAACCGAGAAACCCTTCTGATTT----A----CTTACGCAGTGCT 967 Query 956 GTTAAGTATGCCGTCTCAGTAAGATGTTTTCTTGACTTGTAAAAACAACCTTGAAAGTGA 1015 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 968 GTTAAGTATGCCGTCTCAGTAAGATGTTTTCTTGACTTGTAATAACAACCTTGAAAGTGA 1027 Query 1016 AAATCAATCTGCGTCTTTCTTCTTTTTGCTTGGAGTCTGGTATCAAGTTTTTCTTTTGT- 1074 |||||||| || ||||| ||| ||| ||||||||||| |||||| ||||||| |||| | Sbjct 1028 AAATCAATATGAGTCTTCCTT-TTTCTGCTTGGAGTCAGGTATCGAGTTTTTTTTTTTTT 1086 Query 1075 CCT----C-T--AAAA-TGTGTAGTTGTAGATGTAATTACCTGTTTTCATGCATTCTAAT 1126 ||| | | |||| |||||||||||||||||| || ||||||||||||||||||||| Sbjct 1087 CCTATGTCCTTTAAAAATGTGTAGTTGTAGATGTAGTTCCCTGTTTTCATGCATTCTAAT 1146 Query 1127 ATTGATTGCAAGTTCAATGAATGGATGCATTGTGTTGGCGGCATAGGGGTGTCAAAAGGA 1186 |||||||||||||||||||||| | || |||||||||||| |||||| ||||||| Sbjct 1147 ATTGATTGCAAGTTCAATGAAT--A-GCGTTGTGTTGGCGGTATAGGG-TGTCAAA---- 1198 Query 1187 AATTATGCTTGAAGCTTATCAGTGATTACCAATGATGTATGTGACTGT-T---GCAAATT 1242 |||||||||| |||||||||| |||||||||||||||||||||||| | |||||| Sbjct 1199 --TTATGCTTGACGCTTATCAGTCATTACCAATGATGTATGTGACTGTCTATTGCAAATG 1256 Query 1243 TGGCCGAGTTCATGAACAA-TA-G-----TA-T--CATTGGTTACATACATCAGGCATAA 1292 ||||||| ||||||||||| || | || | ||||||||||||||| ||||||||| Sbjct 1257 TGGCCGACTTCATGAACAAATATGAACAATAGTATCATTGGTTACATACACCAGGCATAA 1316 Query 1293 AACTACATCATTCTCCAAAGGCACTGCTGATCT--G--A-GTGT---TCTG----G-AGA 1339 ||||||||||| ||||||||||||||||||||| | | ||| |||| | ||| Sbjct 1317 AACTACATCATCCTCCAAAGGCACTGCTGATCTCAGGGACGTGGAGGTCTGTTCTGTAGA 1376 Query 1340 AGCTGGCGCTATATTGAATACA 1361 |||||||||||||||||||||| Sbjct 1377 AGCTGGCGCTATATTGAATACA 1398 Score = 147 bits (79), Expect = 4e-34 Identities = 93/99 (94%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 1367 GGAGATCTTTACTTGATTTGGTCGGCTGTATTATATTCGTGAACTCA-AAGTCAAGGCCT 1425 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1442 GGAGATCTTTACTTGATTTGGTCGGCTGTATTATATTCGTGAACTCGGAAGTCAAGGCCT 1501 Query 1426 GTTTT-AGTGGAAGAATGACTCCTTGCTTTTAATATATA 1463 || || | ||||||||||||||||| ||||||||||||| Sbjct 1502 GTCTTGA-TGGAAGAATGACTCCTTACTTTTAATATATA 1539 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72138183165 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5