BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490572
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38150.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1862 0.0
> AT4G38150.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:17900609-17902160 REVERSE LENGTH=1552
Length=1552
Score = 1862 bits (1008), Expect = 0.0
Identities = 1281/1402 (91%), Gaps = 62/1402 (4%)
Strand=Plus/Plus
Query 1 TTTTCGAATCAGCGGCAGATAACGATGGTGTCC-TCCTCGAAAGCCGTCGTTTTTGCGAG 59
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||
Sbjct 18 TTTTCGAATCAGCGGCAGATAACGATGGTG-CCTTCCTCCAAAGCCGTCGTTTTTGCAAG 76
Query 60 GCAGATGGCGAAGCAGATTCGTGTTACGACGCCGTCGATTTCCGCAACACGCTTTCTCTC 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 77 GCAGATGGCGAAGCAGATTCGTGTTACGACGCCGTCGATGTCCGCAACACGCTTTCTCTC 136
Query 120 GACGGGCGACAAAGGTCAAG-A-A-AAGCAGCAGAACCCTCCAGAGCCCTTACCCAACAG 176
||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 137 AACGGGCGACAATGGTCAAGTAGACGAGCAGCAGAACCCTCCAGAGCCCTTACCCAACAG 196
Query 177 ACCCTTGCGAGGTGAGAGATCTTCCAACTCTCACAGAGAACCACCTGCTAGACAAGCCCA 236
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 197 ACCCTTGCGAGGGGAGAGATCTTCCAACTCTCACAGAGAACCACCCGCTAGACAAGCCCA 256
Query 237 CGACCTTGGAAAGATTGATAATACTCTGTCTGACGATGGCTTCCTCGAACAGTTCAAGCT 296
| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 257 CAACCTTGGAAAGAGTGATACTACTCTGTCTGACGATGGCTTCCTCGAACAGTTCAAGCT 316
Query 297 TGGAGTCAATCAGGATTTACAGGAAACCCCCAAACCGGAACAATACCCACAGGACCCCTT 356
||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||||
Sbjct 317 TGGAGTCAATCAGGATTCACGGGAAACCCCCAAACCGGAACAATACCCGCAGGAGCCCTT 376
Query 357 ACTGCCGCCTGAAGATTCCGATGAGATCTTCAAGAAAATGAAGGAAGGAGGTCTCATCCC 416
|| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 377 ACCGCCGCCTGAGGATTCCGATGAGATCTTCAAGAAGATGAAGGAAGGAGGTCTCATCCC 436
Query 417 TAACGCGGTCGCCATGCTTGACGGCCTCTGCAAAGATGGGCTTGTACAGGAGGCCATGAA 476
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 437 TAACGCCGTCGCCATGCTTGACGGCCTCTGCAAAGATGGGCTTGTACAAGAGGCCATGAA 496
Query 477 GCTTTTCGGATTGATGCGTGACAAGGGTACAATCCCTGAGGTCGTTATCTACACTGCTGT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GCTTTTCGGATTGATGCGTGACAAGGGTACAATCCCTGAGGTCGTTATCTACACTGCTGT 556
Query 537 CGTTGAGGGCTTTTGCAAGGCTCATAAAATTGAAGACGCTAAGAGGATTTTCAGGAAAAT 596
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CGTTGAGGCCTTTTGCAAGGCTCATAAAATTGAAGACGCTAAGAGGATTTTCAGGAAAAT 616
Query 597 GCAGACCAATGGGATTGCTCCAAATGCCTTCAGCTATGGTGTGTTGGTTCAGGGATTGTA 656
||||| |||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 617 GCAGAACAATGGGATTGCCCCTAATGCCTTCAGCTACGGTGTGTTGGTTCAGGGATTGTA 676
Query 657 TAATTGCAACATGCTTGACGATGCTGTTACTTTCTGTTGTGAGATGCTCGAGTCTGGTCA 716
|||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 677 TAATTGCAACATGCTTGACGATGCTGTTGCTTTCTGTAGTGAGATGCTTGAGTCTGGTCA 736
Query 717 CTCTCCCAACATCCCCACTTTCGTTGGATTGGTTGATGCCTTGTGCAGAGAAAAGGGCGT 776
|||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 737 CTCTCCTAACGTCCCCACTTTCGTTGAATTGGTTGATGCCTTGTGCAGAGTAAAGGGGGT 796
Query 777 TGAACAAGCCCAGTCCGCTATTGATGGCTTAAACCAAAAAGGATTTGCTC-TTAATGTTA 835
||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||
Sbjct 797 TGAACAAGCCCAGTCCGCTATTGATACCTTAAACCAAAAAGGATTTGC-CGTTAATGTTA 855
Query 836 AGGCTGTCAAGGATTTCATGGATAAAAGGGCTCCATTTCCGTCTTTGGCTTGGGAAGCCA 895
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 AGGCTGTCAAGGAGTTCATGGATAAAAGGGCTCCATTTCCGTCTTTGGCTTGGGAAGCCA 915
Query 896 TTTTCAAGAAGAAACCAACCGACAAACCCTTGTGATTTTCCTATTTACTTACGCAGTGCT 955
| |||||||||||||||||||| |||||||| |||||| | |||||||||||||
Sbjct 916 TCTTCAAGAAGAAACCAACCGAGAAACCCTTCTGATTT----A----CTTACGCAGTGCT 967
Query 956 GTTAAGTATGCCGTCTCAGTAAGATGTTTTCTTGACTTGTAAAAACAACCTTGAAAGTGA 1015
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 968 GTTAAGTATGCCGTCTCAGTAAGATGTTTTCTTGACTTGTAATAACAACCTTGAAAGTGA 1027
Query 1016 AAATCAATCTGCGTCTTTCTTCTTTTTGCTTGGAGTCTGGTATCAAGTTTTTCTTTTGT- 1074
|||||||| || ||||| ||| ||| ||||||||||| |||||| ||||||| |||| |
Sbjct 1028 AAATCAATATGAGTCTTCCTT-TTTCTGCTTGGAGTCAGGTATCGAGTTTTTTTTTTTTT 1086
Query 1075 CCT----C-T--AAAA-TGTGTAGTTGTAGATGTAATTACCTGTTTTCATGCATTCTAAT 1126
||| | | |||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 1087 CCTATGTCCTTTAAAAATGTGTAGTTGTAGATGTAGTTCCCTGTTTTCATGCATTCTAAT 1146
Query 1127 ATTGATTGCAAGTTCAATGAATGGATGCATTGTGTTGGCGGCATAGGGGTGTCAAAAGGA 1186
|||||||||||||||||||||| | || |||||||||||| |||||| |||||||
Sbjct 1147 ATTGATTGCAAGTTCAATGAAT--A-GCGTTGTGTTGGCGGTATAGGG-TGTCAAA---- 1198
Query 1187 AATTATGCTTGAAGCTTATCAGTGATTACCAATGATGTATGTGACTGT-T---GCAAATT 1242
|||||||||| |||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 1199 --TTATGCTTGACGCTTATCAGTCATTACCAATGATGTATGTGACTGTCTATTGCAAATG 1256
Query 1243 TGGCCGAGTTCATGAACAA-TA-G-----TA-T--CATTGGTTACATACATCAGGCATAA 1292
||||||| ||||||||||| || | || | ||||||||||||||| |||||||||
Sbjct 1257 TGGCCGACTTCATGAACAAATATGAACAATAGTATCATTGGTTACATACACCAGGCATAA 1316
Query 1293 AACTACATCATTCTCCAAAGGCACTGCTGATCT--G--A-GTGT---TCTG----G-AGA 1339
||||||||||| ||||||||||||||||||||| | | ||| |||| | |||
Sbjct 1317 AACTACATCATCCTCCAAAGGCACTGCTGATCTCAGGGACGTGGAGGTCTGTTCTGTAGA 1376
Query 1340 AGCTGGCGCTATATTGAATACA 1361
||||||||||||||||||||||
Sbjct 1377 AGCTGGCGCTATATTGAATACA 1398
Score = 147 bits (79), Expect = 4e-34
Identities = 93/99 (94%), Gaps = 3/99 (3%)
Strand=Plus/Plus
Query 1367 GGAGATCTTTACTTGATTTGGTCGGCTGTATTATATTCGTGAACTCA-AAGTCAAGGCCT 1425
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1442 GGAGATCTTTACTTGATTTGGTCGGCTGTATTATATTCGTGAACTCGGAAGTCAAGGCCT 1501
Query 1426 GTTTT-AGTGGAAGAATGACTCCTTGCTTTTAATATATA 1463
|| || | ||||||||||||||||| |||||||||||||
Sbjct 1502 GTCTTGA-TGGAAGAATGACTCCTTACTTTTAATATATA 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72138183165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5