BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490600
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38380.1 | Symbols: | MATE efflux family protein | chr4:179... 2717 0.0
> AT4G38380.1 | Symbols: | MATE efflux family protein | chr4:17971855-17975100
REVERSE LENGTH=1913
Length=1913
Score = 2717 bits (1471), Expect = 0.0
Identities = 1697/1798 (94%), Gaps = 48/1798 (3%)
Strand=Plus/Plus
Query 19 TAAGTTT-GGATTTTGAATCGTTTCTTCTCCTTTACCAGTATCGTCTTCTTCTCGGTTTT 77
||||||| || ||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 75 TAAGTTTCGG-TTTTGAATCGTTTCTTCTCCTCTGCCACTATCGTCTTCTTCTCGGTTTT 133
Query 78 CTATATCGTTTGCGAAACTAGTTTCGTTCACCGTCGTTTCTTTTCTCTCCCACACTCATC 137
||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 134 CTATATCGTTT-------TAGTTTCTTTCACCGTCGTTTCTTTTCTCTCCCACGCTCATC 186
Query 138 CAA-----TT----GAAAGAACCGGATTTTAGTGTTTGTGTGTGATGGAGTCCAGTAGAG 188
||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 187 CAATTTTCTTCCCCTAAAGAACCGGAATTTAGTGTCTGTGTGTGATGGAGTCCAGTAGAG 246
Query 189 TAGTAGTTGGTGGGCAGCAAGTTTCGCTGCCATTTGCGAATAGGAGGAACTCTAGGTTGG 248
||||||| ||| || | | |||||| || |||||||||||||||||||| || |
Sbjct 247 TAGTAGTGGGT-GG-TG---G----GCTGCCCTTGGCGAATAGGAGGAACTCTAGCTTTG 297
Query 249 CCAAACCGAATTTCCAACAAGGGACTTTTCTACCTATATCTCGGATCAAT-A-------- 299
||||||| || ||||||||||||||||||||||| |||||||||||||| |
Sbjct 298 CCAAACCCAAAATCCAACAAGGGACTTTTCTACCTCTATCTCGGATCAATAATGTCTCTG 357
Query 300 ------AAAAATGCTCCCTTCACACCAATCCAAACCCTATGTAT-CCTTTTGTTACTCGC 352
||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 358 CCCCCCAAAAATGCTCCCTTCACACCAATCCAAACCCCATGT-TCCCTTTTGTTACTCGC 416
Query 353 CGCAAGAGCCAGACTAACCCTGATTGCGGTGTTGTCAAGTTGGGGGAAGAAGATGACTCT 412
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 417 CGCAAGAGCCAGACTAACCCTGATTGCGGTGTCGTCAAGTTGGGGGAAGAAGATGACTCT 476
Query 413 TGCCGC-TCACTGGACAAACTCCCGTTGGTTCATGGGCTTCACACTGCTG-AGCCACGTC 470
|| | | |||||||||||||||||| |||| ||||| ||||||||| || || ||||||
Sbjct 477 TG-CTCTTCACTGGACAAACTCCCGGAGGTTAATGGGGTTCACACTGGTGTAG-CACGTC 534
Query 471 CTGTCGATATCAAACGAGAACTCGTGATGCTCTCTCTTCCAGCCATTGCTGGCCAAGCTA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CTGTCGATATCAAACGAGAACTCGTGATGCTCTCTCTTCCAGCCATTGCTGGCCAAGCTA 594
Query 531 TAGATCCTTTGACGCTACTCATGGAGACTGCATACATCGGAAGGCTCGGATCTGTAGAGT 590
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTGATCCTTTGACGCTGCTAATGGAGACTGCATACATCGGAAGGCTCGGATCTGTAGAGT 654
Query 591 TGGGTTCCGCTGGCGTTTCCATGTCCATCTTCAATACCATATCAAAGCTCTTCAACATTC 650
||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 655 TGGGTTCAGCTGGCGTTTCCATGGCCATTTTCAATACCATATCAAAGCTCTTCAACATTC 714
Query 651 CACTCCTCAGCGTTGCCACCTCTTTTGTCGCTGAAGATATTGCAAAGATTGCCGCTGAAG 710
| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 715 CGCTCCTCAGCGTTGCCACTTCTTTCGTCGCTGAAGATATTGCAAAGATTGCCGCTCAAG 774
Query 711 ATTTAGCCTCAGAAGATAGTCATAGTGACATACCTTCTCAAGCTTTACCAGAAAGGAAAC 770
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 775 ATTTAGCCTCAGAAGATAGTCAGAGTGACATACCTTCTCAAGGTTTACCAGAAAGGAAAC 834
Query 771 AGTTATCTTCAGTGTCAACAGCGCTAGTGTTAGCCATTGGAATTGGCATCTTCGAGGCAC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGTTATCTTCAGTGTCAACAGCGCTAGTGTTAGCCATTGGAATTGGCATCTTCGAGGCAC 894
Query 831 TGGCTTTGTCTTTGGCATCTGGACCCTTTCTAAGGTTAATGGGTGTACAATCTATGTCAG 890
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 895 TGGCATTGTCTTTGGCATCTGGACCCTTTCTAAGGTTAATGGGTATACAATCTATGTCAG 954
Query 891 AAATGTTCATCCCTGCGCGGCAGTTTCTTGTCCTTAGGGCGCTTGGTGCTCCTGCTTATG 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AAATGTTCATCCCTGCGCGGCAGTTTCTTGTCCTTAGGGCGCTTGGTGCTCCTGCTTATG 1014
Query 951 TGGTTTCTTTAGCTCTTCAAGGCATTTTTCGTGGATTCAAGGATACAAAAACTCCAGTCT 1010
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGGTTTCCTTAGCACTTCAAGGCATTTTTCGTGGATTCAAGGATACAAAAACTCCAGTCT 1074
Query 1011 ACTGTTTAGGCATTGGTAATTTTCTGGCTGTATTTCTATTCCCTCTGTTTATATACAAGT 1070
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1075 ACTGTTTAGGTATTGGTAATTTTCTGGCTGTATTTCTATTCCCTCTGTTTATATACAAAT 1134
Query 1071 TCAGGATGGGTGTAGCCGGGGCAGCAATCTCTAGTGTCATCTCCCAGTACACTGTTGCCA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TCAGGATGGGTGTAGCCGGGGCAGCAATCTCTAGTGTCATCTCCCAGTACACTGTTGCCA 1194
Query 1131 TTTTGATGCTTATACTCTTGAACAAAAGAGTTATACTGCTTCCTCCAAAGATTGGGTCAC 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TTTTGATGCTTATACTCTTGAACAAAAGAGTTATACTGCTTCCTCCAAAGATTGGGTCAC 1254
Query 1191 TAAAGTTCGGCGATTACCTAAAATCAGGGGGATTTGTTCTTGGAAGGACTCTGTCTGTGC 1250
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1255 TAAAGTTCGGCGATTACCTAAAATCAGGGGGATTTGTTCTGGGAAGGACTCTTTCTGTGC 1314
Query 1251 TCATGACCATGACTGTTGCCACATCAATGGCGGCTCGTCAGGGAGTTTTCGCAATGGCAG 1310
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TCGTGACCATGACTGTTGCCACATCAATGGCGGCTCGTCAGGGAGTTTTCGCAATGGCAG 1374
Query 1311 CACATCAGATATGCATGCAAGTGTGGTTGGCGGTATCTCTGCTTACTGATGCACTAGCTT 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CACATCAGATATGCATGCAAGTGTGGTTGGCGGTATCTCTGCTTACTGATGCACTAGCTT 1434
Query 1371 CATCTGGACAGGCCTTGATCGCGAGTTCTGCATCCAAAAGAGACTTTGAAGGTGTGAAAG 1430
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1435 CATCTGGACAGGCCTTGATCGCGAGCTCTGCATCCAAAAGAGACTTTGAAGGTGTGAAAG 1494
Query 1431 AGGTTACTACTTTTGTTCTGAAGATAGGAGTGGTGACAGGGATTGCACTTGCTGTTGTGT 1490
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||
Sbjct 1495 AGGTTACTACTTTTGTTCTGAAGATAGGAGTGGTGACTGGGATCGCACTGGCTATTGTGT 1554
Query 1491 TGGGGATGTCTTTCAGTTCAATAGCTGGTTTGTTTTCCAAAGACCCTGAAGTTCTGCGGA 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGGGGATGTCTTTCAGTTCAATAGCTGGTTTGTTTTCCAAAGACCCTGAAGTTCTGCGGA 1614
Query 1551 TTGTGAGAAAGGGTGTATTGTTTGTAGCGGCGACTCAACCAATAACAGCGCTAGCGTTTA 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TTGTGAGAAAGGGTGTATTGTTTGTAGCGGCGACTCAACCAATAACAGCGCTAGCGTTTA 1674
Query 1611 TCTTTGATGGGCTGCACTATGGGATGTCTGACTTCCCCTACGCGGCTTGCTCGATGATGG 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 TCTTTGATGGGCTGCACTATGGGATGTCTGACTTCCCCTACGCGGCTTGCTCGATGATGG 1734
Query 1671 TGGTGGGAGGAATATCATCAGCGTTCATGCTGTATGCACCGGCAGGGTTGGGGCTAAGTG 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 TGGTGGGAGGAATATCATCAGCGTTCATGCTGTATGCACCGGCAGGGTTGGGGCTAAGTG 1794
Query 1731 GAGTGTGGGTGGGGCTGAGCATGTTCATGGGATTGCGGATGGTGGCTGGATTTAGCAG 1788
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1795 GAGTGTGGGTGGGGCTGAGCATGTTCATGGGATTGCGGATGGTGGCTGGATTCAGCAG 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88654162470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5