BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490604 Length=1807 Score E Sequences producing significant alignments: (Bits) Value AT4G38420.1 | Symbols: sks9 | SKU5 similar 9 | chr4:17982774-17... 2638 0.0 AT4G28090.1 | Symbols: sks10 | SKU5 similar 10 | chr4:13961888... 1352 0.0 > AT4G38420.1 | Symbols: sks9 | SKU5 similar 9 | chr4:17982774-17985372 FORWARD LENGTH=1915 Length=1915 Score = 2638 bits (1428), Expect = 0.0 Identities = 1589/1667 (95%), Gaps = 10/1667 (1%) Strand=Plus/Plus Query 1 TCTTCTTCTTGTCAAAGCGAGTATGGGCTGGTGGCTAAATGGCGCCGTTTGTACGATGAT 60 ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| Sbjct 45 TCTTCTTCTTGTCAAAGCGAGTATGTGCTGGTGGCTAAATGGGGCCGTTTGGACGATGAT 104 Query 61 GATG--G-CCATATCCACCATTTCTTTTGTTCAAGCTGATGATCCCTACCGTTTTTTCGA 117 |||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 105 GATGATGACGATATCCATCATTTCTTTTGTTCAAGCTGATGATCCCTACCGTTTTTTCGA 164 Query 118 CTGGAGGGTCACTTACGGCAACATTTCTCCACTTGGCATTCCTCAAAGGGGAATCCTGAT 177 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 CTGGAGAGTCACTTACGGCAACATTTCTCCACTTGGCATTCCTCAAAGGGGAATCCTGAT 224 Query 178 TAACGGACTATATCCTGGACCCGATATTTACTCCGTCACCAACGACAATTTGATCATCAA 237 ||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 225 AAACGGACAATATCCAGGACCCGATATTTACTCAGTCACCAATGACAATTTGATCATCAA 284 Query 238 TGTTCACAACGATCTTGACGAACCCTTTCTCTTATCTTGGAACGGAGTGCAACTGAGGAA 297 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 285 TGTTCACAACGATCTCGACGAGCCCTTTCTCTTATCTTGGAACGGAGTGCAACTGAGGAA 344 Query 298 GAATTCTTACCAAGATGGAGTGTATGGGACGACTTGTCCAATCCCACCGGGCAAAAATTA 357 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 345 GAATTCTTACCAAGATGGAGTGTATGGGACGACTTGTCCAATCCCACCGGGTAAAAACTA 404 Query 358 CACTTATGCCATCCAAGTCAAAGACCAGATCGGTAGTTTCTTCTACTTCCCTTCCCTCGC 417 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 405 CACTTATGCCATCCAAGTCAAAGACCAGATCGGTAGTTTCTTCTATTTCCCTTCCCTCGC 464 Query 418 CGTTCACAAAGCCGCCGGTGGTTTTGGCGGTTTCCGTATCCTCAGCCGCCCTCGCATCCC 477 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 CGTTCACAAAGCTGCCGGTGGTTTTGGCGGTTTCCGTATCCTCAGCCGCCCTCGCATCCC 524 Query 478 CGTCCCTTTCCCTGAACCCGCTGGAGATTTCACCTTCCTCATTGGTGATTGGTTTGAGCA 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 525 CGTCCCTTTCCCTGAACCCGCTGGAGATTTCACCTTCCTCATTGGTGATTGGTTTAAGCA 584 Query 538 TGACCACAAGGCTTTGAAGGCAATTTTGGATAGAGGACACAAGCTACCTTTGCCTGAAGG 597 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 585 TGACCACAAGGTTTTGAAGGCAATTTTGGATAGAGGACACAAGCTACCTTTGCCTCAAGG 644 Query 598 GGTTTTGATCAATGGCCAAGGAGTCAGTTACATTTCTTCACTT-ACAGTCCACAAAGGTA 656 ||||||||||||||||||||||||||||||||| ||||| | | || ||||||||||||| Sbjct 645 GGTTTTGATCAATGGCCAAGGAGTCAGTTACATGTCTTC-CATCACCGTCCACAAAGGTA 703 Query 657 AAACATACAGATTTAGAATATCGAATGTAGGGCTTCAAAACACTCTGAATTTTAGAATCC 716 |||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 704 AAACATACAGATTTAGGATATCGAATGTAGGGCTTCAACACACTCTGAATTTCAGAATCC 763 Query 717 AAGGTCATCAGATGAAGCTCGTCGAGGTTGAGGGAACCCATACCA-TACAGTCCATGTAT 775 |||||||||||||||||||||| ||||| |||||||| || || | | |||||||||||| Sbjct 764 AAGGTCATCAGATGAAGCTCGTTGAGGTAGAGGGAACACACAC-AGTCCAGTCCATGTAT 822 Query 776 ACCTCTCTCGACATTCACGTTGGACAGTCTTACTCCGTCTTGGTCACCATGGACCAGCCT 835 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 823 ACCTCTCTCGACATTCACGTTGGACAGTCTTACTCGGTCTTGGTCACCATGGACCAGCCT 882 Query 836 GACCAAGACTATGACATTGTCGTCTCCACAAAATTTGCCGCCAAAAAACTCTTGGTCTCA 895 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 883 GACCAAGACTATGACATTGTCGTCTCCACAAAATTTGTCGCCAAAAAACTCTTGGTCTCA 942 Query 896 TCCACTATCCACTACTCCAACTCAAGACATAGCCGCCACTCATCGTCTGCTAATTCTGTC 955 || ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| Sbjct 943 TCTACTATCCACTACTCCAACTCAAGACATAGCC---ACTCATCTTCTGCTAATTCAGTC 999 Query 956 CATGCTGAGCAACCTGCCGATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGA 1015 |||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1000 CATGTTCAACAACCTGCCGATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGG 1059 Query 1016 ACCAATCTAACCGCGTCTGGGCCAAGGCCTAACCCTCAGGGCTCGTACCACTATGGTCGA 1075 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1060 ACCAATCTAACCGCGTCTGGGCCAAGGCCTAACCCTCAGGGTTCGTACCACTATGGTCGA 1119 Query 1076 ATCAAGATTTCTAGGACTTTAATATTGGAAAGCTCAGCGGCACAAGTGAGGAGGAAGCAA 1135 |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| Sbjct 1120 ATCAAGATTTCTAGGACTTTGATATTGGAAAGCTCAGCGGCACTAGTGAAGAGGAAGCAA 1179 Query 1136 CGCTACGCCATAAACGGAGTGTCGTTTGTAGCTGCAGATACTCCGCTAAAGCTTGCAGAT 1195 |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| Sbjct 1180 CGCTACGCCATAAACGGAGTGTCGTTTGTACCTGGAGATACTCCGCTAAAGCTTGCGGAT 1239 Query 1196 TACTTCAAGATCAAAGGCGTTTTCAAAGTGGGAAGCATCCCTGACAAGCCGAGAAGAGGG 1255 ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 1240 TACTTCAAGATCAAAGGCGTTTTCAAAATGGGAAGCATACCTGACAAGCCGAGAAGAGGA 1299 Query 1256 GGAGGGATGAGAATGGAGACGTCAGTGATGGGAGCACACCATAGAGACTTCCTTGAAATC 1315 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1300 AGAGGGATGAGAATGGAGACGTCAGTGATGGGAGCACACCATAGAGACTTCCTTGAAATC 1359 Query 1316 ATATTTCAAAACCGCGAGAAGATTGTCCAAAGTTACCACCTCGATGGATATAGTTTTTGG 1375 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1360 ATATTTCAAAACCGCGAGAAGATCGTCCAAAGCTACCACCTCGATGGATATAGTTTTTGG 1419 Query 1376 GTTGTCGGGATGGATAGAGGAACATGGTCGCAAGCGAGTAGACGAGAGTATAATCTCAGG 1435 ||||| |||| |||||||||||||||||| |||| || ||||||||||||||||| ||| Sbjct 1420 GTTGTTGGGACGGATAGAGGAACATGGTCAAAAGCAAGCAGACGAGAGTATAATCTTAGG 1479 Query 1436 GATGCTATTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTA 1495 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1480 GATGCTATTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTG 1539 Query 1496 GCACTGGACAATGTGGGGATGTGGAATCTAAGGACTGAATATTGGGCGAGGCAATACTTA 1555 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1540 GCACTGGACAATGTGGGGATGTGGAATCTAAGGAGTGAATATTGGGCGAGGCAATACTTG 1599 Query 1556 GGCCAACAATTCTACCTCCAAGTTTATTCTCAAACACACTCTCTTAGAGATGAATATCTT 1615 || |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| Sbjct 1600 GGTCAACAATTCTACCTTCGAGTTTATTCTCCAACACACTCTCTTAGAGATGAATATCTT 1659 Query 1616 TTGCCTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAGTAAACACAC 1662 ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1660 TTGCCTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAATAAACACAC 1706 Score = 171 bits (92), Expect = 3e-41 Identities = 111/120 (93%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 1690 TATGTTGAGTTCTTTATTCTTTAT-ATTTCGATAGCGAGATATATGTTGCACAATTATTA 1748 ||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 1769 TATATTGAGTTCTTTATTCTTTATAATTTCAATAGCTAGATATATGTTGCACAATTATTA 1828 Query 1749 -ATCTACTACATAAATTGTAATGTACACCCAAATTTGATGAAAATTTTACTGTTTTGTAA 1807 || |||| || ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1829 TATATACTTCAAAAATTGTAATGTATACCCAAATTTGATGAAAATTTTACTGTTTTGTAA 1888 > AT4G28090.1 | Symbols: sks10 | SKU5 similar 10 | chr4:13961888-13964229 REVERSE LENGTH=1644 Length=1644 Score = 1352 bits (732), Expect = 0.0 Identities = 1377/1681 (82%), Gaps = 73/1681 (4%) Strand=Plus/Plus Query 29 TGGTGGCTAAATGGCGCCGTTTGTACGATGATGATGGCCA-TATCCACCATTTCTTTTGT 87 |||||| |||| || | ||||| | |||||||||| | | | ||| |||||||||||| Sbjct 7 TGGTGGTTAAACGGAGGTGTTTGGATGATGATGATGACGACGA-CCATCATTTCTTTTGT 65 Query 88 TCAAGCTGATGATCCCTACCGTTTTTT-CGACTGGAGGGTCACTTACGGCAACATTTCTC 146 | ||||||| || |||| |||||| | |||||||||||||||||||||| ||| || Sbjct 66 TAAAGCTGAAGA----TACCCTTTTTTACAACTGGAGGGTCACTTACGGCAAGATTGCT- 120 Query 147 CACTTGGCA--TT-CCTCAAAGGGGAATCCTGATTAACGGACTATATCCTGGACCCGATA 203 || | || || |||| |||||||||||| || ||||||| || ||||||||| || | Sbjct 121 --CTAGACACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGA 178 Query 204 TTTACTC-CGTCACCAACGACAATTTGATCATCAATGTTCACAACGATCTTGACGAACCC 262 || ||| | ||||||| ||||||||| ||||||||||||| |||||||| ||||| ||| Sbjct 179 TTCGCTCAC-TCACCAATGACAATTTGGTCATCAATGTTCAAAACGATCTCGACGATCCC 237 Query 263 TTTCTCTTATCTTGGAACGGAGTGCA-ACTGAGGAAGAATTCTTACCAAGATGGAGTGTA 321 ||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||||| Sbjct 238 TTTCTCTTATCTTGGAATGGAGTGCATA-TGAGGAAAAATTCTTACCAAGATGGAGTGTA 296 Query 322 TGGGACGACTTGTCCAATCCCACCGGGCAAAAATTACACTTATGCCATCCAAGTCAAAGA 381 |||||||| ||||||||||||||| ||||| ||||||||||||| | | ||||||||||| Sbjct 297 TGGGACGAATTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGA 356 Query 382 CCAGATCGGTAGTTTCTTCTACTTCCCTTCCCTCGCCGTTCACAAAGCCGCCGGTGGTTT 441 ||| ||||||||| |||||||||||||||||||||||| || ||||| |||||||||| Sbjct 357 TCAGGTCGGTAGTTACTTCTACTTCCCTTCCCTCGCCGTCCAAAAAGCGGCCGGTGGTTA 416 Query 442 TGGCGGTTTCCGTATCCT-CAGCCGCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCTG 500 |||| | ||||||| | ||||| ||||||||||||||||||||||||||||||||| | Sbjct 417 TGGCAGCCTCCGTAT-ATACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAG 475 Query 501 GAGATTTCACCTTCCTCATTGGTGATTGGTTT-GAGCATGACCACAAGGCTTTGAAGGCA 559 |||||||||||||||| | ||||||| | || | | |||| | | |||||||| | Sbjct 476 AAGATTTCACCTTCCTCGTAAACGATTGGTATCGA-CGTAACCATACGACTTTGAAGAAA 534 Query 560 ATTTTGGATAGAGGACACAAGCTACC-TT--TGCCTGAAGGGGTTTTGATCAATGGCCAA 616 ||||||||| |||||| |||| |||| || ||||||| |||||| ||||||||||||| Sbjct 535 ATTTTGGATGGAGGACGCAAGTTACCGTTAATGCCTGATGGGGTTATGATCAATGGCCAG 594 Query 617 GGAGTCAGTTACA-TTTCTTC-ACTTACAGTCCACAAAGGTAAAACATACAGATTTAGAA 674 ||||| ||| || ||| ||| | | || ||| ||||||||||||| |||||||| ||| Sbjct 595 GGAGTAAGT-ACTGTTTATTCTA-TCACCGTCGACAAAGGTAAAACGTACAGATTCAGAG 652 Query 675 TATCGAATGTAGGGCTTCAAAACACTCTGAATTTTAGAA-TCCAAGGTCATCAGATGAAG 733 |||| |||||||||||||||| | | |||||||| |||| | |||||||||| | ||| Sbjct 653 TATCAAATGTAGGGCTTCAAACCTCCCTGAATTT-AGAAATATTAGGTCATCAGCTTAAG 711 Query 734 CTCGTCGAGGTTGAGGGAACCCATACCATACAGTCCATGTATACCTCTCTCGACATTCAC 793 ||| | ||||| || |||||||| || | || ||||||| || || ||||||||||| Sbjct 712 CTCATTGAGGTCGAAGGAACCCACACGGTCCAAACCATGTACACATCACTCGACATTCAT 771 Query 794 GTTGGACAGTCTTACTCCGTCTTGGTCACCATGGACCAGCCTGAC-CAAGACTATGACAT 852 ||||| || ||||||| ||||||||||||||||||| ||| | ||| ||||| ||| Sbjct 772 GTTGGTCAAACTTACTCTTTCTTGGTCACCATGGACCAACCTC-CTCAAAACTATTCCAT 830 Query 853 TGTCGTCTCCACAAAATTTGCCGCCAAAAAACTCT-TGGTCTC-ATCCACTATCCACTAC 910 |||||| ||||||| |||| | | | || | | || || | | ||||| |||||||| Sbjct 831 TGTCGTTTCCACAAGATTTATCAACGCAGAAGT-TGTGATC-CGAGCCACTCTCCACTAC 888 Query 911 TCCAACTCAAGACATAGCCGCCACTCATCGTCTGCTAATTCTGTCCATGCTGAGCAACCT 970 |||||||| | | | | | || | | | | | | ||| | || || | |||| Sbjct 889 TCCAACTCCA-A-A--G--GTCA-TAAGATTAT-C-A---CTG-C---GC-GA-CGACCT 930 Query 971 G--CC-GATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGAACCAATCTAACC 1027 | || ||||| |||| ||||||||||||||||||| ||||||||| ||||| ||||| Sbjct 931 GATCCAGATGATGTAGAATGGTCTATCAAACAAGCCCAGTCCATTAGGACCAACCTAACT 990 Query 1028 GCGTCTGGGCCAAGGCCTAACCCTCAGGGCTCGTACCACTATGGTCGAATCAAGATTTCT 1087 ||||| ||||||||| |||||||||| ||||| ||||| |||||| ||| ||||||||| Sbjct 991 GCGTCGGGGCCAAGGACTAACCCTCAAGGCTCATACCATTATGGTAAAATGAAGATTTCT 1050 Query 1088 AGGACTTTAATATTGGAAAGCTCAGCGGCACAAGTGAGGAGGAAGCAACGCTACGCCATA 1147 ||||||||||||||||||||||||||||| | |||| || ||||||||||| |||||| Sbjct 1051 AGGACTTTAATATTGGAAAGCTCAGCGGCTCTTGTGAAAAGAAAGCAACGCTATGCCATA 1110 Query 1148 AACGGAGTGTCGTTTGTAGC-TGCAGATACTCCGCTAAAGCTTGCAGATTACTTCAAGAT 1206 || || || ||||| || || | | ||||||||||| |||||||| ||| | ||||| || Sbjct 1111 AATGGCGTATCGTTCGT-GCCTTCGGATACTCCGCTGAAGCTTGCGGATCATTTCAAAAT 1169 Query 1207 CAAAGGCGTTTTCAAAGTGGGAAGCATCCCTGACAAGCCGAGAAGAGGGGGAGGGATGAG 1266 |||| ||||| ||||| |||| |||||||||||||||||||||||| ||||| || || Sbjct 1170 AAAAGATGTTTTTAAAGTTGGAACCATCCCTGACAAGCCGAGAAGAGGAGGAGGAATAAG 1229 Query 1267 AATGGAGAC-GTCAGTGATGGGAGCACACCATAGA-GACTTC-CTTGAAATCATATTTCA 1323 | || || | ||||||||||||||||||| | | | ||| ||||| ||||| ||||| Sbjct 1230 GCTAGACACAG-CAGTGATGGGAGCACACCACA-ATG-CTTTTCTTGAGATCATCTTTCA 1286 Query 1324 AAACCGCGAGAAGATTGTCCAAAGTTACCACCTCGATGGATATAGTTTTTGGGTTGTCGG 1383 ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| || Sbjct 1287 AAACCGCGAGAAGATCGTCCAAAGTTACCACCTCGATGGATACAACTTTTGGGTTGTTGG 1346 Query 1384 GATGGATAGAGGAACATGGTCGCAAGCGAGTAGACGAGAGTATAATCTCAGGGATGCTAT 1443 ||| ||| ||||| |||||| | ||||| |||||||||||||| |||| ||||||||| Sbjct 1347 GATCAATAAAGGAATATGGTCACGTGCGAGCAGACGAGAGTATAACCTCAAGGATGCTAT 1406 Query 1444 TTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTAGCACTGGA 1503 ||||||||||| ||||| ||||||||| ||||||||||||| |||||||| ||| |||| Sbjct 1407 ATCTCGCTCCACTACTCAAGTATATCCAAAATCTTGGACAGCTGTATATGTGGCATTGGA 1466 Query 1504 CAATGTGGGGATGTGGAATCTAAGGA-CTGAATAT-TGGGCGAGGCAATACTTAGGCCAA 1561 |||||||||||||||||||||||||| | | | | |||||||| ||||||||||| ||| Sbjct 1467 CAATGTGGGGATGTGGAATCTAAGGAGCC-AGT-TCTGGGCGAGACAATACTTAGGTCAA 1524 Query 1562 CAATTCTACCTCCAAGTTTATTCTC-AAACACACTCTCTTAGAGATGAATATCTTTTGCC 1620 ||||||||||| | |||| |||||| ||| ||||||| | ||||||||| | |||||| Sbjct 1525 CAATTCTACCTTCGAGTTCATTCTCCAAAT-CACTCTCCCAAAGATGAATACCCTTTGCC 1583 Query 1621 TAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAGTAAACACAC-TCCCATTACCACTCCTT 1679 |||||||||||||||||||| || ||||||| ||| ||| ||| || | |||||||| Sbjct 1584 AAAGAATGCTTTGTTGTGTGGTCGGGCCTCCAACAAAAACATGTCC-ATCATCACTCCTT 1642 Query 1680 A 1680 | Sbjct 1643 A 1643 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89407170645 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5