BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490605 Length=1906 Score E Sequences producing significant alignments: (Bits) Value AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleoti... 2863 0.0 > AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotide exchange factor 1 | chr4:17986466-17988807 FORWARD LENGTH=1972 Length=1972 Score = 2863 bits (1550), Expect = 0.0 Identities = 1822/1944 (94%), Gaps = 55/1944 (3%) Strand=Plus/Plus Query 1 GAAAGGAGTCttttttattttttatctctca------tctctc---atctct--gctttg 49 |||||||||||||||||||| |||||||||| |||||| ||||| |||||| Sbjct 1 GAAAGGAGTCTTTTTTATTTGTTATCTCTCATCTCTCTCTCTCTTTCTCTCTGAGCTTTG 60 Query 50 ctttttatcAAACAAGCTCGCATCATCATCACATCCACTTCCTTCTTCTTCCTTTCTCT- 108 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTTTTATCAAACAA----GCATCATCATCACATCCACTTCCTTCTTCTTCCTTTCTCTG 116 Query 109 T-TG--------CCCAAATGTGGATTCTTTGAGCCGTTATTAGATCTCTGCCGCCTACCT 159 | || |||||||||||| |||||||||||||||||||||||||||| || | Sbjct 117 TCTGTCTCTTAACCCAAATGTGGACTCTTTGAGCCGTTATTAGATCTCTGCCG-CT---T 172 Query 160 ACAATAATGGGGAGCTTATCTTCTGAGGAAGACGACCAAGTCTCTTCCGAGAGATGCGGA 219 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 173 -CAATAATGGGGAGCTTATCTTCTGAGGAAGACGACGAAGTCTCTTCCGAGAGATGCGGA 231 Query 220 AGTTACAGTCCCAGCGCCGACATTAGCGAGTCTGAGAGTT-C--CA----------CCA- 265 |||||||||||||||||||||||||||||||| ||||||| | || ||| Sbjct 232 AGTTACAGTCCCAGCGCCGACATTAGCGAGTCCGAGAGTTCCAGCAGCTTCTCCTGCCAC 291 Query 266 -GCTTCGACGGCGAGGGACCCTCTAGCTCCATCCCTTCTTCCCCCCGGGTTGTCGCTGGG 324 |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| Sbjct 292 CGCTTCGACGGCGAGGGTGCCTCTAGCTCCATCCCTTCTTCCCCTCGAGTTGTCGCTGGT 351 Query 325 AGAGGCTTTTACTTCCC-GCCGCCAGTTATGCTTCCGGTGATCGGCGGCAAAGATGTGCT 383 ||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||| | Sbjct 352 AGAGGATTTTACTTCCCGGCC-CCAGTCATGCTTCCGGTGATCGGCGGCAAAGATGTGGT 410 Query 384 CTGGGATGACAAACAGTCAGACAACAACGATTTCTCCGAAATTGAGATGATGAAGGAGAG 443 ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| Sbjct 411 CTGGGATGACAAACAACCAG---ACAACGATTTATCCGAAATTGAGATGATGAAGGAGAG 467 Query 444 ATTTGCTAAGCTACTTCTCGGAGAAGACATGTCAGGAGGAGGTAAAGGTGTTTGTACGGC 503 ||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct 468 ATTTGCTAAGCTACTTCTCGGGGAAGACATGTCTGGTGGAGGTAAAGGGGTTTGTACGGC 527 Query 504 GCTTGCTATCTCCAACGCCATCACCAATCTCTCTGCGACTGTCTTCGGCGAGCTATGGAG 563 |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 528 GCTTGCTATCTCCAACGCCATCACCAATCTCTCTGCGACTGTGTTTGGCGAACTATGGAG 587 Query 564 GCTTGAGCCTCTTGCTCCTCAGAAGAAGGCTATGTGGCGCAGAGAACTTGAATGGCTACT 623 |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || Sbjct 588 GCTTGAGCCTCTTGCTCCTCAGAAGAAGGCCATGTGGCGCAGAGAACTTGAGTGGCTGCT 647 Query 624 CTGTGTTAGCGATTCTATCGTTGAGCTCATTCCTTCCCTTCAGCACTTCCCCGGAGGCGG 683 ||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| Sbjct 648 CTGTGTTAGCGATTCTATCGTTGAGCTCATTCCTTCCATTCAGCAGTTCCCTGGAGGCGG 707 Query 684 CACTTATGAGATCATGGAGACCCGTCCACGCTCTGATCTCTATGCCAATCTCCCTGCTCT 743 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 708 AACTTATGAGATCATGGAGACCCGTCCACGTTCTGATCTCTATGCCAATCTCCCTGCTCT 767 Query 744 CAAGAAGCTCGATGCTATGTTGATCGATATGCTTGACGCTTTCTCCGATACCGAGTTCTG 803 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 768 CAAGAAGCTCGATGCTATGTTGATCGATATGCTTGACGCTTTCTCCGATACTGAGTTCTG 827 Query 804 GTATACTGATCGCGGCATTGTTCTTGGAGAATGTGACAAGGATTCTTACAATTCCCCAGC 863 ||| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| Sbjct 828 GTACACTGATCGCGGCATAGTTCTTGGTGATTGTGACAAGGATTCTTACAATTCTCCAGC 887 Query 864 TTCCGTTAGGCAGGAGGACAAGTGGTGGCTGCCTTGCCCTAAGGTTCCGCCTAACGGTTT 923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 TTCCGTTAGGCAGGAGGACAAGTGGTGGCTGCCTTGCCCTAAGGTTCCGCCTAACGGTTT 947 Query 924 GTCAGAAGAGGCCAGGAAGAAACTGCAGCAGTGTCGGGACTTTGCTAACCAGATTCTCAA 983 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 GTCAGAAGAGGCCAGGAAGAAACTGCAGCAGTGTCGGGACTTTGCTAACCAGATTCTCAA 1007 Query 984 GGCTGCATTGGCAATTAACAGCGGTGTGCTCGCCGAAATGGAGATTCCCGACCCTTACTT 1043 ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 1008 GGCTGCATTGGCAATTAACAGTGGCGTGCTTGCCGAAATGGAGATTCCCGACCCTTACTT 1067 Query 1044 GGAGACTTTGCCCAAGAGCGGAAAGGAATGTCTTGGAGAGATCATCTACCAGTACTTAAC 1103 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1068 GGAGACTTTGCCCAAGAGCGGGAAGGAATGTCTTGGAGAGATCATCTACCAGTACTTAAC 1127 Query 1104 TGCAAACAAGTTCTCTCCCGAATGCCTCCTAGACTGTCTTGATCTCTCATCGGAGCATCA 1163 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1128 TGCAAACAAGTTCTCTCCCGAATGCCTCCTGGACTGTCTTGATCTCTCATCGGAACATCA 1187 Query 1164 GACTCTTGAAATCGCCAACCGGATTGAGGCGGCTGTGCACGTTTGGAGACAGAAGAATGG 1223 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1188 GACTCTTGAAATCGCCAACCGGATTGAGGCGGCTGTGCATGTTTGGAGACAAAAGAATGG 1247 Query 1224 GAGGAGGCACAAGAAGCAGGCGAAACTAAAGCTGTCTTCATGGGGTGGCAAGGTTAAAGG 1283 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1248 GAGGAGGCACAAGAAGCAGGCGAAACTAAAGCTGTCTTCTTGGGGTGGCAAGGTTAAAGG 1307 Query 1284 CCTTGTTAATGACACCGAAAGAAATGATTTCCTAGTGCAGAGAGCCGAGACCCTCTTGCA 1343 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1308 CCTTGTTAATGACAACGAAAGAAATGATTTCCTTGTGCAGAGAGCCGAGACCCTCTTGCA 1367 Query 1344 GAGTCTTAGGATCCGTTTTCCGGGACTTCCCCAGACAACGCTGGACATGAACAAGATTCA 1403 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1368 GAGTCTCAGGATCCGTTTCCCGGGACTTCCCCAGACAACGCTGGACATGAACAAGATTCA 1427 Query 1404 GTACAACAAGGATGTAGGGCAATCAATTCTGGAGAGTTACTCGAGGGTGATGGAGAGCAT 1463 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1428 GTACAACAAGGATGTAGGGCAATCAATTCTGGAGAGTTACTCTAGGGTGATGGAGAGCAT 1487 Query 1464 GGCCTTCAACATCACGGCCAGAATAGATGATGTGCTTTATGTTGATGATGCCATGAGAAG 1523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1488 GGCCTTCAACATCACGGCCAGAATAGATGATGTGCTTTATGTTGATGATGCCATGAGAAG 1547 Query 1524 ATCCATCTCTGTCACGGAAACGCTATCCCTATTCAGCATCAATGGACTCAACGGTCAGAA 1583 ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| || Sbjct 1548 ATCCATCTCTGTCACAGAATCGCTATCCCTATTCAGCATCAATGGACTCAACCCTCAAAA 1607 Query 1584 AGCGTTCTCTGTGCAGAGCTCTCCGCATGGTTCACCATTTGCAACGCCTTCCCTAAGTGT 1643 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1608 AGCGTTCTCTGTGCAGAGCTCTCCGCACGGTTCACCATTTGCAACGCCTGCCCTAAGTGT 1667 Query 1644 AGCATCGAGGAGCCCGAGGAGAGCACCGCCGCTGTATTCAGTGAAGAGGAATGGGACGAG 1703 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1668 AGCATCAAGAAGCCCGAGGAGAGCACCGCCGCTGTATTCAGTGAAGAGGAATGGGACGAG 1727 Query 1704 AGAGAAGGGAATAATGGGGGAAACAGAGAAAGCATGGTCGTATGCGGGGAATCTGAGTTC 1763 ||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1728 AGAGAAGGGAATAGTGGGAGAAACAGAGAAAGCATGGTCGTATGCAGGGAATCTGAGTTC 1787 Query 1764 AAGAAGAGTAACGGGAGTGACGCCGGAAAGAGATTAAGGTTGAAAATAGAAGAATGTAAA 1823 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1788 AAGAAGAGTAACGGGAGTGACGCCGGAAAGAGATTAAGATTGAAAATAGAAGAATGTAAA 1847 Query 1824 TCAATGGTTGTAGAGACTGTAGTTGTTTGTTGTTAGTCTGACTACGAAGA-GTATTATTA 1882 |||||||||||||||||||||||||||| ||||| ||||||||||||||| | | || Sbjct 1848 TCAATGGTTGTAGAGACTGTAGTTGTTTCTTGTTTGTCTGACTACGAAGACG-A--ATG- 1903 Query 1883 TGGTAATAGCAACAAGAATGTTAT 1906 |||||||||||||||||||||||| Sbjct 1904 TGGTAATAGCAACAAGAATGTTAT 1927 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94377024600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5