BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490616
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38520.1 | Symbols: | Protein phosphatase 2C family protein... 2041 0.0
AT3G51370.1 | Symbols: | Protein phosphatase 2C family protein... 411 2e-113
> AT4G38520.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:18015736-18018306 REVERSE LENGTH=1993
Length=1993
Score = 2041 bits (1105), Expect = 0.0
Identities = 1287/1368 (94%), Gaps = 39/1368 (3%)
Strand=Plus/Plus
Query 397 AAAAACTGACAAGTTCTATGTTGTGGTGGGAGATTCGGATGAGATGAGGGATGCTATCTG 456
|||||| ||||||||||||| | | || | | |||||||||||||||||||||||||
Sbjct 487 AAAAACGGACAAGTTCTATG-T-T-GT--G-G---CGGATGAGATGAGGGATGCTATCTG 537
Query 457 GGTTGATGAATTTTCTGAATGCCTGTCTCTGGCCACGGTCAGATCAGCAGGCACGTTCAG 516
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 538 GGTTGATGAATTTTCTGAATGCCTGTCTCTGGCCACGGTCAGATCAGCAGGCTCGTTCTG 597
Query 517 CCTCCGACTCTGGCGGCCGCCAAGAGGGTTTGCTCTGGTAT-AGAGACTCC-GCTCAGCA 574
|||| || ||||| ||||||||||||||||||||||||| | ||||||||| || |||||
Sbjct 598 CCTCAGATTCTGGTGGCCGCCAAGAGGGTTTGCTCTGGT-TCAGAGACTCCGGC-CAGCA 655
Query 575 CGTCTTTGGTGACTTCTCCATGGCCGTCGTTCAAGCCAACAGCTTGCTCGAGGACCAGAG 634
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 656 CGTCTTTGGTGACTTCTCCATGGCCGTCGTTCAAGCCAACAGCTTGCTAGAGGACCAGAG 715
Query 635 CCAGCTCGAGTCTGGCTCTCTTAGCTCTCACGACTCTGGTCCCTATGGCACCTTTGTTGG 694
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 716 CCAGCTCGAGTCTGGCTCTCTTAGCTCCCACGACTCTGGTCCCTTTGGCACCTTTGTTGG 775
Query 695 CGTCTACGACGGCCACGGTGGCCCTGAGACTTCTCGCTTCATCAATGATCATATGTTCCA 754
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 776 CGTCTACGACGGCCACGGTGGGCCTGAGACATCTCGCTTCATCAATGATCATATGTTCCA 835
Query 755 CCACCTCAAGAGGTTTACTGCAGAGCAACAGTGTATGTCATCAGAGGTGATAAAAAAGGC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 836 CCACCTCAAGAGGTTTACTGCAGAGCAACAGTGTATGTCATCAGAGGTGATAAAAAAAGC 895
Query 815 GTTCCAAGCGACTGAAGAAGGGTTCTTATCCATAGTTACAAATCAATTTCAAACTAGACC 874
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 896 GTTCCAAGCCACTGAAGAAGGCTTCTTATCCATAGTTACAAATCAATTTCAAACTAGACC 955
Query 875 TCAGATAGCCACTGTGGGGTCATGCTGTCTTGTAAGTGTCATCTGCGATGGGAAGCTCTA 934
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 956 TCAGATAGCCACAGTGGGATCATGCTGTCTTGTAAGTGTCATCTGCGATGGGAAGCTATA 1015
Query 935 CGTGGCCAACGCAGGTGACTCACGGGCCGTTCTGGGACAAGTCATGAGGGTAACCGGTGA 994
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1016 CGTGGCCAACGCAGGGGACTCACGGGCCGTTCTGGGACAAGTCATGAGGGTAACAGGTGA 1075
Query 995 AGCTCATGCCACTCAGCTCTCAGCCGAGCACAACGCATCTATAGAGTCAGTGAGACGGGA 1054
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1076 AGCTCATGCCACTCAGCTCTCAGCAGAGCACAACGCATCTATAGAGTCAGTGAGACGGGA 1135
Query 1055 ACTTCAAGCCCTGCATCCGGATCATCCGGATATTGTGGTTCTGAAACATAACGTCTGGCG 1114
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1136 ACTTCAGGCCCTGCATCCGGATCATCCAGATATTGTGGTTCTGAAACATAACGTCTGGCG 1195
Query 1115 AGTAAAAGGCATCATTCAGGTTTCAAGATCCATTGGTGATGTGTATTTGAAACGGTCAGA 1174
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1196 AGTAAAAGGCATCATTCAGGTTTCAAGATCCATTGGTGATGTGTATTTGAAAAGGTCAGA 1255
Query 1175 GTTCAACAGGGAACCGCTGTATGCAAAATTCAGGCTCAGGTCACCGTTCAGCAAGCCATT 1234
||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1256 GTTCAACAGGGAACCACTGTATGCAAAATTCCGGCTGAGGTCACCGTTCAGCAAGCCATT 1315
Query 1235 ACTGAGTGCAGAGCCGGCGATCACGGTGCATACACTGGAGCCGCACGATCAGTTCATTAT 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 ACTGAGTGCAGAGCCGGCGATCACGGTGCATACACTGGAGCCGCACGATCAGTTCATTAT 1375
Query 1295 ATGTGCTTCAGATGGACTGTGGGAACATATGAGTAACCAAGAAGCAGTAGACATCGTCCA 1354
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1376 ATGTGCATCAGATGGACTGTGGGAACATATGAGCAACCAAGAAGCAGTAGACATAGTCCA 1435
Query 1355 GAATCATCCGCGAAACGGGATTGCAAAGCGGCTGGTGAAAGTAGCGCTACAAGAAGCGGC 1414
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GAATCATCCGCGAAACGGGATAGCAAAGCGGCTGGTGAAAGTAGCGCTACAAGAAGCGGC 1495
Query 1415 AAAGAAGAGAGAGATGAGATACTCAGACCTGAAAAAGATAGACAGAGGAGTGAGGAGACA 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AAAGAAGAGAGAGATGAGATACTCAGACCTGAAAAAGATAGACAGAGGAGTGAGGAGACA 1555
Query 1475 TTTCCACGATGACATAACAGTGGTTGTTGTCTTCTTTGATACAAACCTAGTGAGCAGAGG 1534
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1556 TTTCCACGATGACATAACAGTGATTGTTGTCTTCTTTGATACAAACCTAGTGAGCAGAGG 1615
Query 1535 AAGCT-TGTTGAGAGGACCGGCGGTGTCAGTGAGAGGAGCGGGTGTGAATCTACCTCACA 1593
||| | ||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1616 AAG-TATGTTGAGAGGACCAGCCGTGTCAGTGAGAGGAGCGGGTGTGAATCTACCTCACA 1674
Query 1594 ACACATTGGCGCCTTACACCACGCCAACGCAAGCTGC-G--GCTGGCGGCTCCTGA-T-T 1648
|||| ||||||||| ||||||||| || |||||||| | ||||||| ||||||| | |
Sbjct 1675 ACACCCTGGCGCCTTGCACCACGCCCACTCAAGCTGCTGCTGCTGGCGCCTCCTGACTAT 1734
Query 1649 T---T----ACGGTGTCCTTAAA-TTCTTTCCAAGATC-T----GTAACtatatatatat 1695
| | |||||||||||||| |||||||||||||| | ||||||||||||| ||
Sbjct 1735 TGAATTTTTACGGTGTCCTTAAAATTCTTTCCAAGATCCTTCCTGTAACTATATATAAAT 1794
Query 1696 atttgattatcattattatcattattatcattGACTGGGAAAGGATAT 1743
|| || || ||| | || ||||||||||||||||||||||||||||
Sbjct 1795 AT---AT-AT-ATT-TGATTATTATTATCATTGACTGGGAAAGGATAT 1836
Score = 95.3 bits (51), Expect = 2e-18
Identities = 124/155 (80%), Gaps = 21/155 (14%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCCTCATCCGCTCGCTTATTTTTCTTTATTTTAATAATAATAAAAATCA-T 59
|||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |
Sbjct 137 TCTTCTTCTTCCTCATCCGCTCGCTTATATTTA---ATTT-AATAATAATAAAAATCGGT 192
Query 60 CGGTG-TTTT-ATATAAT--T-TC--TTCTG-GTT-GGTTGATCCATCCGT--T-GTAG- 106
| | |||| |||||| | | || || ||| ||||||||||||||| | ||||
Sbjct 193 -GTTCATTTTTATATAAAAGTATAAATTTTGTGTTTGGTTGATCCATCCGTAGTCGTAGT 251
Query 107 A--TCTACAAACTCAGAAATTCCACGCCCACATCT 139
| ||||||| ||| ||||||||||||||||||||
Sbjct 252 AGATCTACAAGCTCTGAAATTCCACGCCCACATCT 286
> AT3G51370.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:19069363-19072195 FORWARD LENGTH=1814
Length=1814
Score = 411 bits (222), Expect = 2e-113
Identities = 767/1024 (75%), Gaps = 62/1024 (6%)
Strand=Plus/Plus
Query 537 CAAGAGGGTTTGCTCTGGTATAGAGACTCCGCTCAGCACGTCTTTGGTGACTTCTCCATG 596
||||| || ||||| ||||| | ||||| | ||||||| || ||||||| |||||||||
Sbjct 539 CAAGATGGATTGCTTTGGTACAAAGACTTTGGTCAGCACCTCGTTGGTGAATTCTCCATG 598
Query 597 GCCGTCGTTCAAGCCAACAGCTTGCTCGAGGACCAGAGCC-AGCTCGAGTCT-GGCTCTC 654
|| || ||||||||||||| |||||| ||||| ||||||| || | |||||| ||| ||
Sbjct 599 GCTGTTGTTCAAGCCAACAACTTGCTTGAGGATCAGAGCCAAG-TTGAGTCTGGGC-CT- 655
Query 655 TT-AGCT-CTCACGACTCTGGTCCCTATGGCACCTTTGTTGGCGTCTACGACGGCCACGG 712
|| || | ||| ||||||||||| ||||| || ||| |||| |||| || ||||| ||
Sbjct 656 TTGAG-TACTCTTGACTCTGGTCCTTATGGAACTTTTATTGGAATCTATGATGGCCATGG 714
Query 713 TGGCCCTGAGACTTCTCGCTTCATCAATGATCATATGTTCCACCACCTCAAGAGGTTTAC 772
|| |||||||| || || || | |||||||| | || || || || ||||| ||| |
Sbjct 715 CGGGCCTGAGACGTCGCGATTTGTTAATGATCACCTTTTTCAGCATCTAAAGAGATTTGC 774
Query 773 TGCAGAGCA-ACAGTGTATGTC-ATCAGAGGTGATAAAAAAGGCGT-TCCAAGCGACTGA 829
||||||||| | | |||||| | || || || |||||||||| | | ||||| ||
Sbjct 775 TGCAGAGCAGGC-CTCTATGTCGGT-GGATGTAATTAAAAAGGCGTAT-GAGGCGACAGA 831
Query 830 AGAAGGGTTCTTATCCATAGTTACAAATCAATTTCAAACT-AGACCTCAGATAGCCA-CT 887
|||||| || ||| | || ||||| || | | |||| || || ||||| | || |
Sbjct 832 AGAAGGTTTTTTAGGGGTTGTGACAAAGCAGTGGCCAACTAAG-CCACAGATTG-CAGCG 889
Query 888 GTGGGGTCATGCTGTCTT-GTAAGTGTCATCTGC-GATGGGAAGCTCTACGTGGCCAACG 945
|| ||||| ||||| ||| || |||| || ||| || |||| ||| ||| | || || |
Sbjct 890 GTTGGGTCTTGCTG-CTTGGTGGGTGTTATATGCGGA-GGGATGCTTTACATAGCTAATG 947
Query 946 CAGGTGACTCACGGGCCGTTCTGGGACAAGTC-ATGAGGGTAACCGGTGAAGCTCA-TGC 1003
|| || || || || ||||| ||| | | | |||| || || |||| || | | |||
Sbjct 948 TTGGGGATTCCCGTGCAGTTCTTGGA-AGGGCTATGAAGGCGACAGGTG-AGGTTATTGC 1005
Query 1004 CAC-TCAGCTCTCAGCCGAGCACAACG-CATCTATAGAGTCAGTGAGACGGGA-ACTTCA 1060
| | ||||||||| || || || || | | ||||||||| || |||| ||| | | ||
Sbjct 1006 C-CTTCAGCTCTCTGCTGAACATAATGTGA-GTATAGAGTCTGTTAGACAGGAGA-TGCA 1062
Query 1061 AGCCCTGCATCCGGATCATC-CGGATATTGTGGTTCTGAAA-CATAACGTCTGGCGAGTA 1118
|| |||| || ||| | | || ||||||| | | ||| || || || ||||| ||
Sbjct 1063 CTCCTTGCACCCAGATGA-CTCGCATATTGT-CATGTTAAAGCACAATGTGTGGCGTGTT 1120
Query 1119 AAAGGCATCATTCAGGTTTCAAGATCCATTGGTGATGTGTAT-TTGAAACGGTCAGAGTT 1177
|| ||| | |||||| | || |||||||| || || |||||| || ||| || |||||||
Sbjct 1121 AAGGGCCTTATTCAGATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGG-CAGAGTT 1179
Query 1178 CAACAGGGAACCGCTGTATGCAAAAT-TCAGGCTCAGGT-CACCGTTCAGCAAG-CCATT 1234
||||| |||||| |||| |||| | | || || || |||||||| ||| || |
Sbjct 1180 CAACAAGGAACCATTGTACACAAAGTAT-AGAATC-CGTGAACCGTTCA-AAAGACC--T 1234
Query 1235 A-C-TGAGTGCAGAGCCGGCGATCACGGTGCAT-ACACTGGAGCCGCACGATCAG-TTCA 1290
| | |||||| || || |||| |||| |||| | | | | || || ||| || |||
Sbjct 1235 ATCTTGAGTGGGGAACCAACGATAACGGAGCATGAGA-TCCAACCACAAGATAAGTTTC- 1292
Query 1291 TTATATGT-GCTTCAGATGGACTGTGGGAACATATGAGTAACCAAGAAGCAGTAGACATC 1349
| |||| | ||||| |||||||| |||||||| ||||| ||||||||||| || ||||||
Sbjct 1293 TAATAT-TCGCTTCTGATGGACTATGGGAACAGATGAGCAACCAAGAAGCTGTTGACATC 1351
Query 1350 GTCCAGAATCATCCGCGAAACGGGATTGCAAAGCGGCTGGTGAAAG-TAGCGCTACAAGA 1408
|| ||||| || || ||||||||||||||| | | |||||| ||| | || || |||||
Sbjct 1352 GTTCAGAACCACCCACGAAACGGGATTGCACGGAGACTGGTG-AAGATGGCACTGCAAGA 1410
Query 1409 AGCGGCAAAGAAGA-GAGAGATGAGATACTCAGACCTGAAA-AAGATAGACAGAGGAGTG 1466
||||||||||| | ||||||||||||| || || || ||| |||||||| ||||| |||
Sbjct 1411 GGCGGCAAAGAA-ACGAGAGATGAGATATTCTGATCT-AAAGAAGATAGAGAGAGGTGTG 1468
Query 1467 AGGAGACATTTCCACGATGACATAACAGTGGTTGTTGTCTTCTTTGATACAAACCTAG-T 1525
|||||||||||||||||||||||||| ||||| | ||||| ||||||| || | || |
Sbjct 1469 AGGAGACATTTCCACGATGACATAACTGTGGTCATAATCTTCCTTGATACCAATC-AGGT 1527
Query 1526 GAGC 1529
||||
Sbjct 1528 GAGC 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88854964650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5