BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490619 Length=1295 Score E Sequences producing significant alignments: (Bits) Value AT4G38540.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1893 0.0 AT5G05320.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1197 0.0 AT4G38545.1 | Symbols: | other RNA | chr4:18023022-18025287 RE... 383 2e-105 > AT4G38540.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr4:18023121-18025027 FORWARD LENGTH=1490 Length=1490 Score = 1893 bits (1025), Expect = 0.0 Identities = 1194/1274 (94%), Gaps = 18/1274 (1%) Strand=Plus/Plus Query 1 AAAAACAGAGCTTTCTTTCTAAGATCATCAACGCACCATGGAAGAAGAAGGCACCCCAGG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 30 AAAAACAGAGCTTTCTTTCTAAGATCATCAACGCACCATGGAAGAAGAAGGCAGCCCAGA 89 Query 61 CATCATCATCGTCGGCGCCGGAATCTCCGGGCTTTCCACAGCTGTTGGACTACACAGGCT 120 ||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||| Sbjct 90 TATCATCATCGTTGGCGCCGGTATCTCCGGCCTTTCCACCGCTGTTGGACTACACAGGCT 149 Query 121 TGGGATCAGGAGCATGGTGCTGGAATCTTCAGAGAAACTGAGAGCGACAGGGTTTGC-TC 179 ||||||||| |||||||||||||||||||| |||| ||||||||||||||| ||||| | Sbjct 150 TGGGATCAGAAGCATGGTGCTGGAATCTTCGGAGACACTGAGAGCGACAGGATTTGCAT- 208 Query 180 TTACGACTTATTTCAATGCTTGGAAGGCCATGGAAGCTCTCGACGTTGCTCAGCATATTC 239 |||| |||| ||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 209 TTACCACTTGGTTCAATGCTTGGAAGGCCATGGAAGCTCTCGGCGTTTCTCAGCATATTC 268 Query 240 GCAGTCTCCATGATCGTCTTCAAGGATGGGTGGTTGGACCAATTTCTGCAGCAAATCCTC 299 |||||||||||||||| ||| ||||||||||||||||| |||||||||||| || ||||| Sbjct 269 GCAGTCTCCATGATCGCCTTGAAGGATGGGTGGTTGGAACAATTTCTGCAGGAACTCCTC 328 Query 300 CCAAAGAGATGCTGTTTCCAGAATCCGAAGAATACGAGTCTCGATGCGTACAGAGGAAGC 359 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 329 CCACAGAGATGCTGTTTCCAGAATCCGAAGAATATGAGTCTCGATGCGTACAGAGGAAGC 388 Query 360 TGTTGTTAGAGGCTCTAGCAGGTGAGTTACCTCAAGAGTCTATAAGGTATTCGTCTAAGG 419 |||||||||||||||||||||||||||| ||| ||||| | || |||| ||||||||||| Sbjct 389 TGTTGTTAGAGGCTCTAGCAGGTGAGTTGCCTGAAGAGACCATCAGGTTTTCGTCTAAGG 448 Query 420 TTGTTCATATCG-ATCTGTCTGGACGCTACAAGATGGTTCATCTCTCCGACGGGACCATT 478 |||||||||| | || |||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 449 TTGTTCATATTGAAT-TGTCTGGATGCTACAAGAAGGTTCATCTCTCCGACGGGACCATT 507 Query 479 CTCAAAACCAAGGTTTTGGTAGGGTGCGATGGAGTGTACTCGGTGGTTGGTAAGTGGCTA 538 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 508 CTCAAAACCAAGGTTTTGGTAGGGTGCGATGGAGTGTACTCAGTGGTTGGTAAGTGGCTA 567 Query 539 GGCTTCAAAAATCCGGCTACAACTGCCCGGTTAGCAATCCGAGGGCTCACACATTTCCCG 598 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 568 GGCTTCAAAAATCCCGCTACAACTGCCCGGTTAGCAATCCGAGGGCTCACACATTTTCCG 627 Query 599 GAAGGCCACGGATTTGGGAAAAGGTTATTCCAGTTTTATGGAGACGGTGTTCGTTCGGGT 658 |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct 628 GAAGGCCATGGATTTGGGAAAAGGTTCTTCCAGTTTTATGGAGACGGCGTTCGTTCCGGT 687 Query 659 TTTATCCCCTGTGACCACAACAATGTCTACTGGTTCCTAACCCACACCTCCACTGATATA 718 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 688 TTTATCCCATGTGACCACAACACTGTCTACTGGTTCCTAACCCACACCTCCACTGATATA 747 Query 719 GATGAGGAGACAAATCCGGAAATCCTCAAAGAGTTTGTGCTGAACAAGATCAAGGACTTG 778 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 748 GATGAGGAGACAAATTCGGAAATCCTCAAAGAGTTTGTGCTGAACAAGATCAAAGACTTG 807 Query 779 CCTGAAAACATTAAGAATGTGGTGGAGACCACCGATCTTGATAGCATGGTGATGTCTCGA 838 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 808 CCTGAAAACATTAAGAATGTGGTGGAGACCACTGATCTTGATAGCATGGTGATGTCTCAA 867 Query 839 CTGAAGTACCGGCCTCCATGGGAACTGCTCTGGTCAAACATCACAAAAGACAATGTGTGC 898 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 868 CTGAAGTACCGACCTCCATGGGAACTGCTATGGTCAAACATCACAAAAGACAACGTGTGC 927 Query 899 GTTGCAGGGGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGGGGTTGCTCAGCA 958 |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 928 GTTGCAGGAGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGAGGTTGCTCAGCC 987 Query 959 ATGGAGGATGGAGTCATCCTCGCTCGTTGTCTAGGTGAAGCGATAAAAGCAAAGAATCTG 1018 |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||| Sbjct 988 ATGGAGGATGGAGTTATCCTTGCTCGTTGTCTAGGTGAAGCGATAAAGGCAAAGAGTCTG 1047 Query 1019 AAAGGTGAAACAGAAGAA---GA-GA-G----TTATAAGAGGATTGAAGAAGGTTTGAAA 1069 |||||||||||||||||| || || | ||||||||||||||||||||||||||| Sbjct 1048 AAAGGTGAAACAGAAGAAAATGAAGAAGAGGGTTATAAGAGGATTGAAGAAGGTTTGAAG 1107 Query 1070 AAGTATGCAGGAGAAAGGAAATGGAGAAGCATTGATCTGATAACAACGGCATATACAGTA 1129 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1108 AAGTATGCAGGAGAAAGGAAATGGAGAAGCATTGATCTTATAACAACGGCATATACAGTA 1167 Query 1130 GGATTCATACAGCAGAGCAGAGGGAAGTGGATGAACATGTTGAGAGACAGGTTCTTGTCG 1189 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1168 GGATTCATACAGCAGAGCAGAGGGAAGTGGATGAACATGTTCAGAGACAGGTTCCTGTCG 1227 Query 1190 TCTTACCTATC-ACGGATGTTGCTGAAAAAGTCTCATTTCGATTGCGGAAGCCTTGTCCC 1248 |||||||| || | ||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 1228 TCTTACCTTTCTA-GGATGCTGCTGAAAAAGTCCCATTTCGATTGCGGAAGCCTTGTCCC 1286 Query 1249 --G-TGATTCTCAA 1259 | |||||||||| Sbjct 1287 ATGATGATTCTCAA 1300 > AT5G05320.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:1575006-1576731 REVERSE LENGTH=1360 Length=1360 Score = 1197 bits (648), Expect = 0.0 Identities = 1060/1257 (84%), Gaps = 36/1257 (3%) Strand=Plus/Plus Query 34 CACCATGGAAGAAGAAGGCACCCCAGGCATCATCATCGTCGGCGCCGGAATCTCCGGGCT 93 ||||||||||| ||| | |||| || |||||||||||||| || ||||||||||| || Sbjct 49 CACCATGGAAGCTGAAAGTACCCAAGATATCATCATCGTCGGAGCTGGAATCTCCGGCCT 108 Query 94 TTCCACAGCTGTTGGACTACACAGGCTTGGGATCAGGAGCATGGTGCTGGAATCTTCAGA 153 | |||| || |||| || ||||||||||||||||| ||||| |||||||||||||| || Sbjct 109 TGCCACTGCACTTGGGCTCCACAGGCTTGGGATCAGAAGCATAGTGCTGGAATCTTCTGA 168 Query 154 GAAACTGAGAGCGACAGGGTTTGCTCTTACGACT-TATTTCAATGCTTGGAAGGCCATGG 212 | | |||||||| ||||| ||||| ||| | | | ||||| ||||||||||||||||||| Sbjct 169 GCAGCTGAGAGCAACAGGATTTGCACTTTC-ATTATATTTTAATGCTTGGAAGGCCATGG 227 Query 213 AAGCTCTCGACGTTGCTCAGCATATTCGCAGTCTCCATGATCGTC-TTCAAGGATGGGTG 271 ||||||||| || |||||||||||||||||||| |||||| | |||||||||||||| Sbjct 228 AAGCTCTCGGTATTTCTCAGCATATTCGCAGTCTCGGTGATCG-CTTTCAAGGATGGGTG 286 Query 272 GTTGGACCAATTTCTGCAGCAAATCCTCCCAAAGAGATGCTGTTTCCAGAATCCGAAGAA 331 || |||| |||||||||| | ||||||| ||||| ||| | ||||||||||| |||||| Sbjct 287 GTCAGACCCATTTCTGCAGGAGATCCTCCTAAAGAAATGTTATTTCCAGAATCTGAAGAA 346 Query 332 TACGA-GTCTCGATGCGTACAGAGGAAGCTGTTGTTAGAGGCTCTAGCAGGTGAGTTACC 390 || || || ||||||||||||||||||||| |||||||| |||||||| || || || || Sbjct 347 TATGAGGT-TCGATGCGTACAGAGGAAGCTCTTGTTAGACGCTCTAGCGGGCGAATTGCC 405 Query 391 TCAAGAGTCTATAAGGTAT-TCGTCTAAGGTTGTTCATATCG-ATCTGTCTGGACGCTAC 448 ||||| | | ||| ||| | || |||||| ||||||| |||| || |||| |||| |||| Sbjct 406 TCAAGGGACCATACGGT-TCTCATCTAAGCTTGTTCACATCGAAT-TGTCCGGACACTAC 463 Query 449 AAGATGGTTCATCTCTCCGACGGGACCATTCTCAAAACCAAGGTTTTGGTAGGGTGCGAT 508 |||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct 464 AAGATGGTTCATCTCTCCGACGGGACTATACTTAAAACCAAGGTTTTGGTAGGGTGTGAT 523 Query 509 GGAGTGTACTCGGTGGTTGGTAAGTGGCTAGGCTTCAAAAATCCGGCTACAACTGCCCGG 568 |||||| | || |||||||||||||||||||||||||| ||||||| || |||| ||| | Sbjct 524 GGAGTGAAGTCAGTGGTTGGTAAGTGGCTAGGCTTCAAGAATCCGGTTAAAACTTCCC-G 582 Query 569 T-TAGCAATCCGAGGGCTCACACATTTCCCGGA-AGGCCACGGATTTGGGAAAAGGTTAT 626 | |||||||||| ||| || | ||||| || || |||||||| ||| |||| |||||| | Sbjct 583 TGTAGCAATCCGCGGGATCGCTCATTT-CCAGACAGGCCACGAATTAGGGAGAAGGTTCT 641 Query 627 TCCAGTTTTATGG-AGACGGTGTTCGTTCGGGTTTTATCCCCTGTGACCACAACAATGTC 685 | ||||||||||| | ||||||||||||| ||||| ||| | |||||||| |||| |||| Sbjct 642 TTCAGTTTTATGGCA-ACGGTGTTCGTTCCGGTTTCATCTCATGTGACCAAAACACTGTC 700 Query 686 TACTGGTTCCTAACCCACACCTCCACTGATATAGATGAGGAGACAAATC--CGGAAATCC 743 ||||||||||||||||||||||| |||||| ||||| | ||| ||||| | | || Sbjct 701 TACTGGTTCCTAACCCACACCTCTACTGATTTAGAT-A--AGAAAAATCATCAG-AA-GA 755 Query 744 TCAAAGAGTTTGTGCTGAACAAGATCAAGGACTTGCCTGAAAACATTAAGAATGTGGTGG 803 ||||| |||||||||||| ||||||||| ||||||||||| ||||| |||| | | ||| Sbjct 756 TCAAACAGTTTGTGCTGACCAAGATCAAAGACTTGCCTGACAACATCAAGAGTATCCTGG 815 Query 804 AGACCACCGATCTTGATAGCATGGTGATGTCTCGACTGAAGTACCGGCCTCCATGGGAAC 863 ||||||| ||||||||||| |||||||| || ||| | ||| || ||||| ||||||| Sbjct 816 AGACCACTGATCTTGATAGTTTGGTGATGAATCCACTCATGTATCGACCTCCCTGGGAAC 875 Query 864 TGCTCTGGTCAAACATCACAAAAGACAATGTGTGCGTTGCAGGGGATGCACTTCACCCAA 923 | || ||| ||||||| |||||||||| || || ||||||||||||||||||||||||| Sbjct 876 TTCTTTGGGCAAACATTGCAAAAGACAACGTATGTGTTGCAGGGGATGCACTTCACCCAA 935 Query 924 TGACTCCTGATATCGGACAAGGGGGTTGCTCAGCAATGGAGGATGGAGTCATCCTCGCTC 983 ||||||||||||| |||||||| |||||||| || |||||||| ||||| |||||||||| Sbjct 936 TGACTCCTGATATTGGACAAGGTGGTTGCTCGGCGATGGAGGACGGAGTTATCCTCGCTC 995 Query 984 GTTGTCTAGGTGAAGCGATAAAAGCAAAGAATCTGAAAGGTGAAACAGAAGA--AGA--G 1039 ||||||| |||||||| || ||||| |||||| ||||||||||||||||||| ||| | Sbjct 996 GTTGTCTCGGTGAAGCAATGAAAGCTAAGAATATGAAAGGTGAAACAGAAGATGAGAACG 1055 Query 1040 AG--TTATAAGAGGATTGAAGAAGGTTTGAAAAAGTATGCAGGAGAAAGGAAATGGAGAA 1097 || ||||| | |||||||||| |||||||| |||||||||||| ||||||||||||| Sbjct 1056 AGAGTTATAGGCGGATTGAAGATGGTTTGAAGAAGTATGCAGGATCGAGGAAATGGAGAA 1115 Query 1098 GCATTGATCTGATAACAACGGCATATACAGTAGGATTCATACAGCAGAGCAGAGGGAAGT 1157 |||||||||| ||||| || ||||||||||||| |||||||||||||||||||| |||| Sbjct 1116 GCATTGATCTTATAACTACATCATATACAGTAGGTTTCATACAGCAGAGCAGAGGCAAGT 1175 Query 1158 GGATGAACATGTTGAGAGACAGGTTCTTGTCGTCTTACCTATCACGGATGT-TGCTGAAA 1216 |||||| | |||| ||||||| |||| |||| |||| ||| || || || || ||||| Sbjct 1176 GGATGACCCTGTTTAGAGACAAGTTCATGTCCTCTTTCCTTTCTTGGTTGCGTG-TGAAA 1234 Query 1217 AAGTCTCATTTCGATTGCGGAAGCCTT-GTCCC-G--TGATTCTCAATGAGCAAGCA 1269 |||||||||||| | || ||||| ||| | || | |||||||||||||||||||| Sbjct 1235 AAGTCTCATTTCAACTGTGGAAGACTTAG-CCATGAATGATTCTCAATGAGCAAGCA 1290 > AT4G38545.1 | Symbols: | other RNA | chr4:18023022-18025287 REVERSE LENGTH=1140 Length=1140 Score = 383 bits (207), Expect = 2e-105 Identities = 231/243 (95%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 775 CTTGCCTGAAAACATTAAGAATGTGGTGGAGACCACCGATCTTGATAGCATGGTGATGTC 834 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 523 CTTGCCTGAAAACATTAAGAATGTGGTGGAGACCACTGATCTTGATAGCATGGTGATGTC 464 Query 835 TCGACTGAAGTACCGGCCTCCATGGGAACTGCTCTGGTCAAACATCACAAAAGACAATGT 894 || |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || Sbjct 463 TCAACTGAAGTACCGACCTCCATGGGAACTGCTATGGTCAAACATCACAAAAGACAACGT 404 Query 895 GTGCGTTGCAGGGGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGGGGTTGCTC 954 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 403 GTGCGTTGCAGGAGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGAGGTTGCTC 344 Query 955 AGCAATGGAGGATGGAGTCATCCTCGCTCGTTGTCTAGGTGAAGCGATAAAAGCAAAGAA 1014 ||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct 343 AGCCATGGAGGATGGAGTTATCCTTGCTCGTTGTCTAGGTGAAGCGATAAAGGCAAAGAG 284 Query 1015 TCT 1017 ||| Sbjct 283 TCT 281 Score = 209 bits (113), Expect = 4e-53 Identities = 140/153 (92%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 113 CACAGGCTTGGGATCAGGAGCATGGTGCTGGAATCTTCAGAGAAACTGAGAGCGACAGGG 172 ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| Sbjct 832 CACAGGCTTGGGATCAGAAGCATGGTGCTGGAATCTTCGGAGACACTGAGAGCGACAGGA 773 Query 173 TTTGC-TCTTACGACTTATTTCAATGCTTGGAAGGCCATGGAAGCTCTCGACGTTGCTCA 231 ||||| | |||| |||| ||||||||||||||||||||||||||||||| |||| |||| Sbjct 772 TTTGCAT-TTACCACTTGGTTCAATGCTTGGAAGGCCATGGAAGCTCTCGGCGTTTCTCA 714 Query 232 GCATATTCGCAGTCTCCATGATCGTCTTCAAGG 264 |||||||||||||||||||||||| ||| |||| Sbjct 713 GCATATTCGCAGTCTCCATGATCGCCTTGAAGG 681 Score = 180 bits (97), Expect = 4e-44 Identities = 111/118 (94%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 AAAAACAGAGCTTTCTTTCTAAGATCATCAACGCACCATGGAAGAAGAAGGCACCCCAGG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1012 AAAAACAGAGCTTTCTTTCTAAGATCATCAACGCACCATGGAAGAAGAAGGCAGCCCAGA 953 Query 61 CATCATCATCGTCGGCGCCGGAATCTCCGGGCTTTCCACAGCTGTTGGACTACACAGG 118 ||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||| Sbjct 952 TATCATCATCGTTGGCGCCGGTATCTCCGGCCTTTCCACCGCTGTTGGACTACACAGG 895 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63704491605 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5