BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490624
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38580.1 | Symbols: ATFP6, HIPP26, FP6 | farnesylated protei... 957 0.0
> AT4G38580.1 | Symbols: ATFP6, HIPP26, FP6 | farnesylated protein
6 | chr4:18034431-18035889 FORWARD LENGTH=823
Length=823
Score = 957 bits (518), Expect = 0.0
Identities = 601/638 (94%), Gaps = 18/638 (3%)
Strand=Plus/Plus
Query 1 AATTCATCATTTACTTCTTTACACCTCCACTTTCCTTTTTG-CCCTCTTATTTT--TGAG 57
||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||
Sbjct 1 AATTCATCATTTACTTCTTTACACCTCCACTTTCCCTTTTGCCCCTCTT-TTTTACAGAT 59
Query 58 Ttctctctctactctact-ctactct-ctcctcctcCT--T-AAGAAAGTTTTTAACTCT 112
||| |||||| ||||||| || |||| ||||||||||| | ||||||||| ||||||||
Sbjct 60 TTCACTCTCTGCTCTACTACT-CTCTCCTCCTCCTCCTCCTAAAGAAAGTTCTTAACTCT 118
Query 113 CCTGGGTTCTTCAGGtttttcttttttttttttGGGAATAAAAAGAAGAAGAAATGGGTG 172
||||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 119 CCTGGGTTCTTCAGGTTTTTC-----CTTTTCT-GGAATAAAAAGAAGAAGAAATGGGTG 172
Query 173 TTCTTGATCATGTCTCTGAAATGTTTGACTGCTCTCATGGTCACAAAATTAAAAAGCGCA 232
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 173 TTCTTGATCATGTCTCTGAAATGTTTGACTGCTCTCATGGTCACAAGATTAAAAAGCGCA 232
Query 233 AACAGTTGCAGACGGTGGAGATCAAAGTGAAAATGGACTGCGAAGGTTGCGAGCGGAAAG 292
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 233 AACAGTTGCAGACGGTGGAGATTAAAGTGAAAATGGACTGCGAAGGTTGCGAGCGGAAAG 292
Query 293 TGCGGCGTTCTGTGGAAGGCATGAAGGGTGTGTCTTCTGTGACGTTGGAGCCCAAAGCCT 352
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TGCGGCGTTCTGTCGAAGGCATGAAGGGTGTGTCTTCTGTGACGTTGGAGCCCAAAGCC- 351
Query 353 CA-AAAGTCACTGTGGTCGGCTACGTCGATCCCAACAAGGTGCTGGCTCGAATGGCTCAC 411
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 352 CATAAAGTCACTGTAGTCGGCTACGTCGATCCCAACAAGGTGGTGGCTCGAATGTCTCAC 411
Query 412 AGGACCGGCAAGAAAGTCGAGATCTGGCCATATGTGCCCTACGACGTGGTCGCTCATCCT 471
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGGACCGGCAAGAAAGTCGAGCTCTGGCCATATGTGCCCTACGACGTGGTCGCTCATCCT 471
Query 472 TACGCTGCCGGTGTCTACGACAAGAAGGCACCCTCCGGTTATGTCCGAAGAGCCGACGAC 531
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 472 TACGCTGCCGGTGTCTACGACAAGAAGGCACCCTCCGGTTATGTCCGAAGAGTCGACGAC 531
Query 532 CCTGGAGTGTCGCAGCTGGCTCGTGCTAGCTCCACTGAGGTCCGCTACACTACTGCATTT 591
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 532 CCCGGAGTGTCGCAGCTGGCTCGTGCTAGCTCCACCGAGGTCCGCTACACCACTGCATTT 591
Query 592 AGCGACGAGAACCCGGCGGCTTGTGTGGTCATGTGATG 629
||||||||||||||||||||||||||||||||||||||
Sbjct 592 AGCGACGAGAACCCGGCGGCTTGTGTGGTCATGTGATG 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5