BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490626
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38620.1 | Symbols: ATMYB4, MYB4 | myb domain protein 4 | ch... 1770 0.0
AT4G34990.1 | Symbols: AtMYB32, MYB32 | myb domain protein 32 |... 350 3e-95
AT1G63910.1 | Symbols: AtMYB103, MYB103 | myb domain protein 10... 60.2 5e-08
> AT4G38620.1 | Symbols: ATMYB4, MYB4 | myb domain protein 4 |
chr4:18053551-18054999 FORWARD LENGTH=1287
Length=1287
Score = 1770 bits (958), Expect = 0.0
Identities = 1197/1301 (92%), Gaps = 61/1301 (5%)
Strand=Plus/Plus
Query 1 ATCATCTAGAAGCAATTTTGtatataactatatatatatgtgtata-tCCATGTGTAGCT 59
||||||||||||| | ||||| ||| | ||||||||| |||||||| ||| | | |||||
Sbjct 1 ATCATCTAGAAGC-A-TTTGTGTAT-A-TATATATATGTGTGTATATTCC-TCTCTAGCT 55
Query 60 TTAAGTCAAAACCCTATATAAACTATACACCAAAGCTTTGAACCTTCAACCAAACCCAAA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 TTAAGTCAAAACCCTATATAAACTATACACCAAAGCTTTGAACCTTCAACCAAACCCAAA 115
Query 120 ATCCAAGTGCCCCACCAAATGCTTCAATCCTCTTCCACTACACAAGAAAACAACTTAATC 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 116 ATCCAAGTGCCCCACCAAATGCTTCAATCCTCTTCCACTACACAAAAAAACAACTTAATC 175
Query 180 CCTTTATACCCTTTTAGCCAAAACCCTCACTAAAAGCCAAT--C-C-ATATATAATAACA 235
|||||||||||||||||||||||||||| |||||||||||| | | ||||| |||||||
Sbjct 176 CCTTTATACCCTTTTAGCCAAAACCCTCGCTAAAAGCCAATCCCTCAATATAAAATAACA 235
Query 236 AGAAGAATTGATCATACTGCCTATATATAAGATTTTGTATCAATTCACATCAAGAAATAA 295
|| ||||||| || ||||||||||||||||||||| | | | |||||||
Sbjct 236 AGTAGAATTG---AT-CTGCCTATATATAAGATTTTG---------AGA-C--GAAATAA 279
Query 296 GATCTAAACCACAAGAAAGAAAAGaaaaaaaaaaaaaaaaaaaGTATGGGAAGGTCACCG 355
||||||||||||||||||| |||| ||| | |||||||||||||||||||||
Sbjct 280 GATCTAAACCACAAGAAAG-AAAG--------TAAACATAAAAGTATGGGAAGGTCACCG 330
Query 356 TGTTGTGAGAAAGCTCACACAAACAAAGGAGCATGGACGAAAGAAGAGGACGAGAGGCTC 415
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TGCTGTGAGAAAGCTCACACAAACAAAGGAGCATGGACGAAAGAAGAGGACGAGAGGCTC 390
Query 416 ATAGCTTACATTAAAGCTCATGGAGAAGGCTGCTGGAGATCTCTCCCCAAAGCCGCCGGA 475
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 GTCGCCTACATTAAAGCTCATGGAGAAGGCTGCTGGAGATCTCTCCCCAAAGCCGCCGGA 450
Query 476 CTTCTTCGGTGTGGCAAAAGCTGCCGTCTCCGGTGGATCAACTATCTCCGGCCTGACCTT 535
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CTTCTTCGCTGTGGCAAGAGCTGCCGTCTCCGGTGGATCAACTATCTCCGGCCTGACCTT 510
Query 536 AAGCGTGGAAACTTCACCGAGGAAGAAGACGAGCTCATCATCAAGCTCCATAGCCTTCTT 595
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 511 AAGCGTGGAAACTTCACCGAGGAAGAAGACGAACTCATCATCAAGCTCCATAGCCTTCTT 570
Query 596 GGCAACAAATGGTCGCTTATTGCCGGGAGATTACCGGGAAGAACAGATAACGAGATTAAG 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 571 GGCAACAAATGGTCGCTTATTGCCGGGAGATTACCGGGAAGAACAGATAACGAGATAAAG 630
Query 656 AATTACTGGAACACACATATACGAAGAAAGCTTATAAACAGAGGGATTGATCCAACGACT 715
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 631 AACTATTGGAACACGCATATACGAAGAAAGCTTATAAACAGAGGGATTGATCCAACGAGT 690
Query 716 CATAGACCAATCCAAGAATCATCAGCTTCTCAAGATTCTAAGCCTACACAACTAGAACCA 775
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 691 CATAGACCAATCCAAGAATCATCAGCTTCTCAAGATTCTAAACCTACACAACTAGAACCA 750
Query 776 GTTACGAGTAACACCATTAATATCTCCTTCACTTCTGCTCCAAAGGTCGAAACGTTCCAT 835
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 751 GTTACGAGTAATACCATTAATATCTCATTCACTTCTGCTCCAAAGGTCGAAACGTTCCAT 810
Query 836 GAGAGTATAAGTTTTCC---A------GAGAAAATATCAATGCTTACGTTCAAAGAGGAA 886
|| |||||||| ||||| | |||||||| |||||||||||||||||||| |||
Sbjct 811 GAAAGTATAAGCTTTCCGGGAAAATCAGAGAAAATCTCAATGCTTACGTTCAAAGAAGAA 870
Query 887 AAAGACGAGTGCCCAGTTGAAGAAAAGTTCCCAGATTTGAATCTTGAGCTCAGAATCAGT 946
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 871 AAAGATGAGTGCCCAGTTCAAGAAAAGTTCCCAGATTTGAATCTTGAGCTCAGAATCAGT 930
Query 947 CTTCCTGATGATGTCGATCGTCGTCAAGGCTTGGTGGGACACGGAAAGTCAACAACGCCA 1006
|||||||||||||| ||||||| |||||| | || ||||||||||||||||||
Sbjct 931 CTTCCTGATGATGTTGATCGTCTTCAAGG---G------CATGGAAAGTCAACAACGCCA 981
Query 1007 CGTTGTTTCAAGTGCAGCTTAGGGATGATAAACGGCATGGAGTGCAGATGCGGAAGAATG 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CGTTGTTTCAAGTGCAGCTTAGGGATGATAAACGGCATGGAGTGCAGATGCGGAAGAATG 1041
Query 1067 AGATGCGATGTAGTTGGAGGTAGCAGCAAGGGGAGTGACTTGAGCAAGGGATTTGATTTT 1126
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1042 AGATGCGATGTAGTCGGAGGTAGCAGCAAGGGGAGTGACATGAGCAATGGATTTGATTTT 1101
Query 1127 TTAGGGTTGGCAAAGAAAGAGACCACTTCTCTTTTGGGGTTTCGAAGCTTGGAGATGAAA 1186
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1102 TTAGGGTTGGCAAAGAAAGAGACCACTTCTCTTTTGGGCTTTCGAAGCTTGGAGATGAAA 1161
Query 1187 TAATTAATATTGTCAAATTT-AGGCGTAACTGTACAAAACTTTTGCCTAGATAATTTCAA 1245
|||| | | | ||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1162 TAAT-A-T-T-GTCAAATTTTAGGCGTAACTGTACAAAACTTTTGCCTAGATAATTTGAA 1217
Query 1246 AGTAAATCTTCTTCAACTTGTATGAGAAATTTAACTGTTGA 1286
|||| |||||| ||||||||||||||||||||||| |||
Sbjct 1218 AGTATATCTTC---AACTTGTATGAGAAATTTAACTGGTGA 1255
> AT4G34990.1 | Symbols: AtMYB32, MYB32 | myb domain protein 32
| chr4:16661329-16662367 REVERSE LENGTH=944
Length=944
Score = 350 bits (189), Expect = 3e-95
Identities = 348/424 (82%), Gaps = 13/424 (3%)
Strand=Plus/Plus
Query 336 aaaGTATGGGAAGGTCACCGTGTTGTGAGAAAG-CTCACACAAACAAAGGAGCATGGACG 394
|||| ||||||||||| || || |||||||||| | ||||||||||||||||| |||||
Sbjct 75 AAAG-ATGGGAAGGTCTCCTTGCTGTGAGAAAGAC-CACACAAACAAAGGAGCTTGGACT 132
Query 395 AAAGAAGAGGACGAGAGGCTCATAGCTTACATTAAAGCTCATGGAGAAGGCTGCTGGAGA 454
|| ||||| ||||| | |||||| ||||||| |||||||| || ||||| || ||| |
Sbjct 133 AAGGAAGAAGACGATAAGCTCATCTCTTACATCAAAGCTCACGGTGAAGGTTGTTGGCGT 192
Query 455 TCTCTCCCCAAAGCCGCCGGACTTCTTCGGTGTGGCAAAAGCTGCCGTCTCCGGTGGATC 514
||||| || | | ||||||| |||| || || || |||||||| |||||||| |||||
Sbjct 193 TCTCTTCCTAGATCCGCCGGTCTTCAACGTTGCGGAAAAAGCTGTCGTCTCCGATGGATT 252
Query 515 AACTATCTCCGGCCTGACCTTAAGCGTGGAAACTTCACCGAGGAAGAAGACGAGCTCATC 574
||||||||||| ||||| || ||| | || ||||||||| |||||||| || ||||||
Sbjct 253 AACTATCTCCGACCTGATCTCAAGAGGGGTAACTTCACCCTCGAAGAAGATGATCTCATC 312
Query 575 ATCAAGCTCCATAGCCTTCTTGGCAACAAATGGTCGCTTATTGCCG-GGAGATTACCGGG 633
||||| || ||||||||||| || ||||| ||||| ||||||| || ||||||||| ||
Sbjct 313 ATCAAACTACATAGCCTTCTCGGTAACAAGTGGTCTCTTATTG-CGACGAGATTACCAGG 371
Query 634 AAGAACAGATAACGAGATTAAGAATTACTGGAACACACATAT-ACGAAGAAAGCTTATAA 692
|||||||||||||||||||||||||||||||||||||||| | | || ||| ||| || |
Sbjct 372 AAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAGAGGAA-GCT-ATTA 429
Query 693 ACAGA-GGGATTGATCCAACGACTCATAGACCAATCCAA-GA-ATCATCAGCTTCTCAAG 749
| | | ||||||||||| |||||||| |||| ||| || || | || | |||||||||
Sbjct 430 AGAAAAGGGATTGATCCGGCGACTCATCGACCTATC-AACGAGACCAAAA-CTTCTCAAG 487
Query 750 ATTC 753
||||
Sbjct 488 ATTC 491
> AT1G63910.1 | Symbols: AtMYB103, MYB103 | myb domain protein
103 | chr1:23719783-23721774 REVERSE LENGTH=1447
Length=1447
Score = 60.2 bits (32), Expect = 5e-08
Identities = 38/41 (93%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 626 TTACCGGGAAGAACAGATAACGAGATTAAGAATTACTGGAA 666
||||||||||||||||||||||||||||| || || |||||
Sbjct 435 TTACCGGGAAGAACAGATAACGAGATTAAAAACTATTGGAA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5