BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490627 Length=1409 Score E Sequences producing significant alignments: (Bits) Value AT4G38630.1 | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory p... 2034 0.0 > AT4G38630.1 | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057130-18059540 REVERSE LENGTH=1469 Length=1469 Score = 2034 bits (1101), Expect = 0.0 Identities = 1295/1384 (94%), Gaps = 31/1384 (2%) Strand=Plus/Plus Query 49 ACGATGGTTCTCGAGGCGACTATGATATGCATCGACAACTCCGAGTGGATGCGAAACGGA 108 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 79 ACGATGGTTCTCGAGGCGACTATGATATGTATCGACAACTCCGAGTGGATGCGAAACGGA 138 Query 109 GATTACTCTCCGTCTAGGTTACAGGCGCAAACGGAAGCTGTTAATCTTCTTTGTGGGGCC 168 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 139 GATTACTCTCCGTCTAGGTTACAGGCGCAAACGGAAGCTGTTAATCTTCTTTGCGGAGCC 198 Query 169 AAAACCCAGTCGAATCCGGAGAATACGGTGGGGATATTGACAATGGCTGGCAAAGGAGTT 228 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 199 AAAACCCAGTCGAATCCGGAGAATACGGTGGGGATTTTGACAATGGCTGGCAAAGGAGTT 258 Query 229 AGAGTTTTGACTACGCCTACCTCTGATCTTGGCAAAATTCTGGCCTGTATGCACGGCCTT 288 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 259 AGAGTATTGACTACTCCTACCTCTGATCTTGGCAAAATTCTGGCCTGTATGCACGGCCTT 318 Query 289 GATGTTGGAGGAGAGATCAATTTAACAGCAGCTATCCAGATCGCCCAGCTAGCTCTTAAG 348 ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 319 GATGTGGGAGGAGAGATCAACTTAACCGCAGCTATCCAGATCGCCCAGCTAGCTCTTAAG 378 Query 349 CATCGCCAAAACAAGAATCAACGCCAACGGATTATTGTTTTTGCTGGAAGTCCAATCAAG 408 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 379 CATCGCCAAAACAAGAATCAACGCCAAAGGATTATTGTTTTTGCTGGAAGTCCAATCAAG 438 Query 409 TACGAAAAGAAGGCCCTAGAAG-TAGTTGGCAAAAGGCTGAAGAAGAATAGTGTCTCTCT 467 ||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||| Sbjct 439 TACGAGAAGAAGGCCCTAG-AGATAGTTGGAAAAAGGCTGAAGAAGAATAGTGTCTCTCT 497 Query 468 TGACATTGTCAATTTCGGGGAAGATGATGATGAGGAAAAGCCTCAGAAGCTGGAGGCCCT 527 ||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| || Sbjct 498 TGATATTGTCAATTTCGGGGAGGATGATGATGAGGAAAAGCCTCAGAAACTCGAGGCGCT 557 Query 528 CCTTACTGCCGTCAATAACAACGACGGTAGCCACATTGTTCATGTTCCATCTGGAGCCAA 587 |||||| || || |||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 558 CCTTACAGCTGTGAATAACAATGACGGTAGCCACATTGTTCATGTTCCTTCTGGAGCCAA 617 Query 588 TGCTCTCTCAGATGTGCTTCTCAGCACACCTGTCTTCACGGGTGATGAGGGTGCAAGTGG 647 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 618 TGCTCTCTCAGATGTGCTTCTCAGCACACCTGTATTCACGGGTGATGAGGGTGCAAGTGG 677 Query 648 GTATGTTTCTGCGGCAGCTGCTGCAGCTGCAGCAGGTGGGGACTTTGACTTTGGTGTAGA 707 |||||||||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct 678 CTATGTTTCTGCGGCAGCTGCTGCAGCGGCCGCAGGTGGGGACTTCGACTTTGGTGTGGA 737 Query 708 CCCAAATATCGATCCAGAGCTTGCTCTCGCCCTTCGGGTCTCCATGGAGGAGGAGAGAGC 767 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 738 CCCAAATATCGATCCAGAACTTGCTCTTGCCCTTCGGGTCTCCATGGAGGAGGAGAGAGC 797 Query 768 AAGACAAGAGGCTGCTGCTAAGAAGGCAGCCGATGAGGCAGGTCAGAAAGACAAAGATGG 827 ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 798 AAGACAAGAAGCTGCTGCCAAGAAGGCGGCCGATGAGGCAGGTCAGAAAGACAAAGATGG 857 Query 828 GGACACAGCTTCCGCCTCACAGGAGACAGTTGCTAGGACAACTGAGAAGAACGCTGAACC 887 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 858 GGACACAGCTTCCGCCTCACAGGAGACAGTTGCTAGGACAACTGACAAGAACGCTGAACC 917 Query 888 AATGGATGAGGACAGTGCGCTGCTAGATCAGGCAATTGCTATGTCTGTAGGTGATGTGAA 947 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 918 AATGGATGAGGACAGTGCGTTGCTAGATCAGGCAATTGCTATGTCTGTTGGTGATGTGAA 977 Query 948 TATGTCAGAAGCGGCTGATGAGGACCAGGATCTGGCTTTAGCTCTGCAAATGTCAATGAG 1007 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 978 TATGTCAGAAGCGGCTGATGAGGACCAGGATCTGGCTTTAGCTCTGCAAATGTCAATGAG 1037 Query 1008 TGGGGAAGAGTCAAGTGAAGCTACAGGTGCTGGAAACAATCTCTTGGGAGATCAAGCCTT 1067 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1038 TGGGGAAGAGTCAAGTGAAGCTACAGGTGCTGGAAACAACCTCTTGGGAAATCAAGCCTT 1097 Query 1068 CATATCGTCTGTTCTCTCATCGCTTCCTGGGGTAGATCCAAATGATCCAGCGGTTAAAGC 1127 ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct 1098 CATATCGTCTGTTCTCTCATCGCTTCCTGGGGTGGATCCAAATGATCCGGCAGTTAAAGA 1157 Query 1128 GTTGCTAGCGTCTCTGCCAGACGAGTCAAAGGTGCGGAACgaggaggaagagagtagtag 1187 | ||||||||||||||||||||||||||| || | ||||||||||||||||||||| Sbjct 1158 ACTACTAGCGTCTCTGCCAGACGAGTCAAAG---CGTACCGAGGAGGAAGAGAGTAGTAG 1214 Query 1188 caaa---ggtgaggatgagaagaagtgaagaaggaagagagaggTCTGAATAAAAATTCC 1244 |||| || ||||||||||||||||||||||||| ||||| ||| |||||||||||| Sbjct 1215 CAAAAAAGGCGAGGATGAGAAGAAGTGAAGAAGGATCTGAGAG-TCTCAATAAAAATTCC 1273 Query 1245 TCTTGTTTCTTTGGTTTGATAGAGATTGGGACTGATTTTAACTAATCTCTCTGCCTTATG 1304 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || Sbjct 1274 TCTTGTTTCTTTGGTTTGATAGAGATTGGAACTGAATTTAACTAATCTCTCTGCCTTGTG 1333 Query 1305 AACTTTGttttttt-------------------ATAATGTTGTTATTGTACGAGTCAAAG 1345 || ||||||||||| ||||||||||||||||||||||||| | Sbjct 1334 AAATTTGTTTTTTTCTCTCTCTCTCGCCTTTTTATAATGTTGTTATTGTACGAGTCAA-G 1392 Query 1346 GACTAGCTTCCTTCTTAATTTTTATCGGACTTTATGTCGAATGGGGCTCTTAGAAAGTAG 1405 ||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| Sbjct 1393 GACTAGCTTCCTTCTTAATTTTTATTGGACTTTATGTC-AATGGG-CTCTTAGAAAGTAA 1450 Query 1406 GCCT 1409 |||| Sbjct 1451 GCCT 1454 Score = 84.2 bits (45), Expect = 3e-15 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 1 CTAAAATCTAAATCTTGCGTTCCTGACTTTCTCTCTACGACAGAATTT 48 |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 6 CTAAAATCTAAATCTTGCCTTCCTGACTTTCTCTCTACGACAGAATTT 53 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69427353735 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5