BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490638 Length=711 Score E Sequences producing significant alignments: (Bits) Value AT4G38740.1 | Symbols: ROC1 | rotamase CYP 1 | chr4:18083395-18... 856 0.0 > AT4G38740.1 | Symbols: ROC1 | rotamase CYP 1 | chr4:18083395-18084251 REVERSE LENGTH=857 Length=857 Score = 856 bits (463), Expect = 0.0 Identities = 512/536 (96%), Gaps = 1/536 (0%) Strand=Plus/Plus Query 25 AACAACCAACAATGGCGTTCCCTAAGGTATACTTCGACATGACCATCGATGGCCAGCCCG 84 ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 104 AACAA-CAAGAATGGCGTTCCCTAAGGTATACTTCGACATGACCATCGACGGCCAGCCCG 162 Query 85 CGGGAAGGATCGTGATGGAGCTGTACACCGACAAGACTCCCAGGACTGCCGAGAATTTCA 144 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 163 CGGGAAGGATCGTGATGGAGCTGTACACCGATAAGACTCCCAGGACTGCCGAGAATTTCA 222 Query 145 GAGCTCTCTGCACCGGAGAGAAAGGAGTTGGCAGTAGCGGGAAACCCCTTCACTTCAAGG 204 ||||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||||| Sbjct 223 GAGCTCTCTGCACCGGAGAGAAAGGTGTTGGCGGTACCGGAAAACCCCTTCACTTCAAGG 282 Query 205 GATCTAAGTTTCACCGTGTGATCCCTAAGTTCATGTGTCAGGGAGGAGATTTCACCGCCG 264 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 283 GATCTAAGTTTCACCGTGTGATCCCTAACTTCATGTGCCAGGGAGGAGATTTCACCGCCG 342 Query 265 GGAACGGAACAGGCGGTGAGTCGATCTACGGGACCAAGTTTGAGGACGAGAATTTCGAGA 324 ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 343 GGAACGGAACAGGCGGTGAGTCGATCTACGGGAGCAAGTTCGAGGACGAGAATTTCGAGA 402 Query 325 GGAAGCACACCGGACCTGGAATACTGTCGATGGCGAACGCCGGTGTAAACACGAACGGAT 384 |||||||||||||||| || || |||||||||||||||||||||| |||||||||||||| Sbjct 403 GGAAGCACACCGGACCGGGGATCCTGTCGATGGCGAACGCCGGTGCAAACACGAACGGAT 462 Query 385 CTCAGTTCTTCATCTGCACCGTGAAGACCGATTGGCTTGATGGTAAGCACGTGGTGTTTG 444 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 463 CTCAGTTCTTCATCTGCACCGTGAAGACCGATTGGCTTGATGGGAAGCACGTGGTGTTTG 522 Query 445 GGCAAGTCGTGGAAGGGTTAGACGTGGTGAAGGCGATCGAGAAGGTTGGATCGTCATCTG 504 |||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||| Sbjct 523 GGCAGGTCGTGGAAGGCTTAGACGTGGTAAAGGCCATCGAGAAGGTTGGATCATCATCTG 582 Query 505 GAAAGCCAACGAAGCCTGTGGTTGTTGCCGATTGTGGCCAGCTCTCTTAGGATCTT 560 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 583 GAAAGCCGACGAAGCCTGTGGTTGTTGCCGATTGTGGTCAGCTCTCTTAGGATCTT 638 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34460624842 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5