BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490638

Length=711
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38740.1 | Symbols: ROC1 | rotamase CYP 1 | chr4:18083395-18...   856    0.0  


> AT4G38740.1 | Symbols: ROC1 | rotamase CYP 1 | chr4:18083395-18084251 
REVERSE LENGTH=857
Length=857

 Score =  856 bits (463),  Expect = 0.0
 Identities = 512/536 (96%), Gaps = 1/536 (0%)
 Strand=Plus/Plus

Query  25   AACAACCAACAATGGCGTTCCCTAAGGTATACTTCGACATGACCATCGATGGCCAGCCCG  84
            ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  104  AACAA-CAAGAATGGCGTTCCCTAAGGTATACTTCGACATGACCATCGACGGCCAGCCCG  162

Query  85   CGGGAAGGATCGTGATGGAGCTGTACACCGACAAGACTCCCAGGACTGCCGAGAATTTCA  144
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  163  CGGGAAGGATCGTGATGGAGCTGTACACCGATAAGACTCCCAGGACTGCCGAGAATTTCA  222

Query  145  GAGCTCTCTGCACCGGAGAGAAAGGAGTTGGCAGTAGCGGGAAACCCCTTCACTTCAAGG  204
            ||||||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||
Sbjct  223  GAGCTCTCTGCACCGGAGAGAAAGGTGTTGGCGGTACCGGAAAACCCCTTCACTTCAAGG  282

Query  205  GATCTAAGTTTCACCGTGTGATCCCTAAGTTCATGTGTCAGGGAGGAGATTTCACCGCCG  264
            |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  283  GATCTAAGTTTCACCGTGTGATCCCTAACTTCATGTGCCAGGGAGGAGATTTCACCGCCG  342

Query  265  GGAACGGAACAGGCGGTGAGTCGATCTACGGGACCAAGTTTGAGGACGAGAATTTCGAGA  324
            ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct  343  GGAACGGAACAGGCGGTGAGTCGATCTACGGGAGCAAGTTCGAGGACGAGAATTTCGAGA  402

Query  325  GGAAGCACACCGGACCTGGAATACTGTCGATGGCGAACGCCGGTGTAAACACGAACGGAT  384
            |||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||
Sbjct  403  GGAAGCACACCGGACCGGGGATCCTGTCGATGGCGAACGCCGGTGCAAACACGAACGGAT  462

Query  385  CTCAGTTCTTCATCTGCACCGTGAAGACCGATTGGCTTGATGGTAAGCACGTGGTGTTTG  444
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  463  CTCAGTTCTTCATCTGCACCGTGAAGACCGATTGGCTTGATGGGAAGCACGTGGTGTTTG  522

Query  445  GGCAAGTCGTGGAAGGGTTAGACGTGGTGAAGGCGATCGAGAAGGTTGGATCGTCATCTG  504
            |||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct  523  GGCAGGTCGTGGAAGGCTTAGACGTGGTAAAGGCCATCGAGAAGGTTGGATCATCATCTG  582

Query  505  GAAAGCCAACGAAGCCTGTGGTTGTTGCCGATTGTGGCCAGCTCTCTTAGGATCTT  560
            ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  583  GAAAGCCGACGAAGCCTGTGGTTGTTGCCGATTGTGGTCAGCTCTCTTAGGATCTT  638



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34460624842


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5