BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490641
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38770.1 | Symbols: PRP4, ATPRP4 | proline-rich protein 4 | ... 2305 0.0
> AT4G38770.1 | Symbols: PRP4, ATPRP4 | proline-rich protein 4
| chr4:18096809-18098565 REVERSE LENGTH=1664
Length=1664
Score = 2305 bits (1248), Expect = 0.0
Identities = 1578/1723 (92%), Gaps = 79/1723 (5%)
Strand=Plus/Plus
Query 1 CATATCCTCACCTTCTCCACTAATACTCTATTTATCATATAGtttttttGTTGTTCTTAT 60
|||||| |||||||| |||||||||||||| || | | | |||||||| |||||||
Sbjct 1 CATATCATCACCTTCCCCACTAATACTCTA--TA--GT-T--TGTTTTTGTTCTTCTTAT 53
Query 61 AAACTTTATATTTTCAGCAAACGAAAGAGAAGTGTGTCAGAACTCTCAGAGGGTGAGAAT 120
|| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 54 AATCTTTATATTTTCAGCAAACGAAAGGGAAGTGTGTCAGAAATCTCAGAGGGTGAGAAT 113
Query 121 CCCAATGAGGATCTTACCCGAACCTCGAGGTTCGATTCCGTGCCTTCTCCTTCTCGTGTC 180
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 114 CCCAATGAGGATCTTACCCGAACCTCGAGGTTCGGTTCCGTGTCTTCTCCTTCTTGTGTC 173
Query 181 GGTTCTCTTTTCAGCGACTCTCACACTCGCTCGTGTCGTCGAAGTTGTCGGTTACGCCGA 240
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 174 GGTTCTCTTATCAGCGACTCTCTCACTCGCTCGTGTCGTCGAAGTTGTCGGTTACGCCGA 233
Query 241 GAGCAAGATCAAAACCCCCCATGCATTTTCAGGACTCCGAGTGACGATCGACTGTAAGGT 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 234 GAGCAAGATCAAAACCCCCCATGCATTTTCAGGACTTCGAGTGACGATCGACTGTAAGGT 293
Query 301 AAATAAAGGCCATTTTGTTACAAAAGGTTCCGGAAACATTGACGACAAAGGAAAATTTGG 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 294 GAATAAAGGCCATTTTGTTACAAAAGGTTCGGGAAACATTGACGACAAAGGAAAGTTTGG 353
Query 361 TCTTAATATTCCTCATGACATTGTCTCCGACGATGGAGCGTTGAAGGAGGAGTGTTACGC 420
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 354 TCTTAATATTCCTCATGACATTGTCTCCGACAACGGAGCGTTAAAGGAGGAGTGTTACGC 413
Query 421 TCAGCTTCACAGCGCGGCGGGAACCCCTTGTCCGGCTCACGACGGCCTTGAATCCACCAA 480
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 414 TCAGCTTCACAGCGCGGCGGGAACACCTTGTCCGGCTCACGACGGCCTTGAGTCCACCAA 473
Query 481 GATCGTGTTTTTATCCAAATCCGGGGATAAACACGTTTTGGGTCTCAAACAAAATCTGAA 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 474 GATCGTGTTTTTATCCAAATCCGGGGATAAACACATTTTGGGTCTCAAACAAAATCTGAA 533
Query 541 ATTTTCACCCGAAATTTGCGTTTCGAAATTCTTCTGGCATATGCCTAAGTTGCCTCCTTT 600
||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 534 ATTTTCACCGGAGATTTGCGTTTCCAAATTCTTCTGGCCTATGCCTAAGTTGCCTCCTTT 593
Query 601 TAAGGGCTTTGATCATCCGTTCCCTTTACCTCCACCTTTGGAACTTCCACCGTTTCTCAA 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TAAGGGCTTTGATCATCCTTTCCCTTTACCTCCACCTTTGGAACTTCCACCGTTTCTCAA 653
Query 661 GAAGCCATGTCCACCTAAATTCAGCCCTCCTGTGGAGGTTCCACCTCCGGTTCCGGTTTA 720
|||||||||||||||||||| ||| |||||||||||||||||||| ||||| || |||||
Sbjct 654 GAAGCCATGTCCACCTAAATACAGTCCTCCTGTGGAGGTTCCACCCCCGGTACCAGTTTA 713
Query 721 CGAGCCACCGCCAAAGAAAGAGATTCCGCCTCCGGTTCCGGTTTACGATCCACCGCCAAA 780
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 714 CGAGCCGCCGCCAAAGAAAGAGATTCCCCCGCCGGTTCCGGTTTACGATCCACCGCCTAA 773
Query 781 GAAAGAGGTTCCCCCACCTGTCCCGGTTTACGAGCCACCACCAAAGGTGGAGCTTCCACC 840
|||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 774 GAAAGAGGTTCCACCACCTGTCCCAGTTTACAAGCCACCACCAAAGGTGGAGCTTCCACC 833
Query 841 GCCTATTCCTAAGAAGCCTTGTCCACCTAAACCGCCGAAGATAGAGCACCCACCTCCGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GCCTATTCCTAAGAAGCCTTGTCCACCTAAACCGCCGAAGATAGAGCACCCACCTCCGGT 893
Query 901 TCCGGTTTACAAGCCACCGCCAAAGATAGAGCACCCACCTCCAGTTCCGGTTTACAAGCC 960
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 894 TCCGGTTTACAAGCCACCGCCAAAGATAGAGAAGCCACCTCCGGTTCCGGTTTACAAGCC 953
Query 961 ACCGCCAAAGATAGAGCACCCACCTTCGATAGAGCACCCACCTCCAGTTCCGGTACACAA 1020
|||||||||||||||||||||||| | | | ||||||||||||||
Sbjct 954 CCCGCCAAAGATAGAGCACCCACCT-C-------C-C---------GTTCCGGTACACAA 995
Query 1021 GCCACCGAAGAAGCCATGTCCGCCTAAGCCGCCGAAGGTGGAGCTTCCACCGCCGGTGCC 1080
|| ||||||||||||||||||||||||| ||| || | | ||||||||||||||
Sbjct 996 GCTACCGAAGAAGCCATGTCCGCCTAAGA-----AAGTTG-A--T-CCACCGCCGGTGCC 1046
Query 1081 AGTCTACAAACCACCAACGAAGAAGCCTTGTCCGCCTAAACCGCCGAAGAAAGTTGATCC 1140
|||| |||||||||||||||||||||||||||||||||| | || | ||||||||
Sbjct 1047 AGTCCACAAACCACCAACGAAGAAGCCTTGTCCGCCTAA---G---AA-A--GTTGATCC 1097
Query 1141 ACCGCCGGTTCCAGTCCACAAGCCGCCGCCAAAGATAGTCATTCCACCGCCGAAGATAGA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 ACCGCCGGTTCCAGTCCACAAGCCGCCGCCAAAGATAGTCATTCCACCGCCGAAGATAGA 1157
Query 1201 GCACCCACCTCCGGTTCCGGTTTACAAGCCGCCGCCGAAGATAGAGCATCCACCAATCTA 1260
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GCACCCACCTCCAGTTCCGGTTTACAAGCCGCCGCCGAAGATAGAGCATCCACCAATCTA 1217
Query 1261 CATACCACCAGTAGTGATCCCGAAGAAGCCGTGTCCTCCGCCGGTACCAGTATACAAACC 1320
|||||||||| | || | |||||||||||||||||||||||||||| ||||||||||
Sbjct 1218 CATACCACCAAT--TG-T---GAAGAAGCCGTGTCCTCCGCCGGTACCAATATACAAACC 1271
Query 1321 ACCGGTGGTGATTCCGAAGAAGCCGTGTCCTCCGCCGGTACCAGTATACAAACCACCGGC 1380
|||||| ||||| || |||||||| || |||||||||||||||||||||||||||||||
Sbjct 1272 ACCGGTTGTGATCCCCAAGAAGCCATGCCCTCCGCCGGTACCAGTATACAAACCACCGGT 1331
Query 1381 -G-G-TGATACCAAAGAAGCCATGTCCGCCACTTCCACAGCTTCCACCACTTCCAAAGTT 1437
| | |||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1332 AGTGGTGATTCCAAAGAAGCCATGTCCGCCACTTCCACAGCTCCCACCACTTCCAAAGTT 1391
Query 1438 TCCACCTCTTCCTCCTAAATACATTCACCACCCCAAGTTCGGGAAATGGCCTCC------ 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 TCCACCTCTTCCTCCTAAATACATTCACCACCCCAAGTTCGGGAAATGGCCTCCGTTGCC 1451
Query 1492 ---ACACCCTTGAGAAA-ATTAAATACGtatatatatatataCGTATACTCATGTATAAT 1547
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1452 TCCACACCCTTGAGAAACATTAAATACGTATATATAGATATACGTATACTCATGTATAAT 1511
Query 1548 CAACGTGTT-GCCTTTTT--AATACTTTATCTTTGCATGTTCTCTTTATATTTTGTTTCT 1604
||||||||| |||||||| |||| ||||||||||||| | | ||||||| ||||||||
Sbjct 1512 CAACGTGTTTGCCTTTTTTTAATATTTTATCTTTGCATATG-T-TTTATATCTTGTTTCT 1569
Query 1605 TTTGTTGGCTTTCCCTCTGAGTTATCTTATATGTGTAGACTGTTTGTTTATATTCCCGCA 1664
|||||||||||| ||||| |||| | |||||||||| |||||||||||||||||
Sbjct 1570 TTTGTTGGCTTT------GAGTTCTCTT-T--GTGTAGACTGGTTGTTTATATTCCCGCA 1620
Query 1665 ATATTCTTCCAACAATAATATGGTAATGATACGTTTCTCTTTT 1707
|| ||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AT---CTTCCAACAATAATATGGTAATGATACGTTTCTCTTTT 1660
Score = 110 bits (59), Expect = 6e-23
Identities = 67/71 (94%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 914 CCACCGCCAAAGATAGAGCACCCACCTCCAGTTCCGGTTTACAAGCCACCGCCAAAGATA 973
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1141 CCACCGCCGAAGATAGAGCACCCACCTCCAGTTCCGGTTTACAAGCCGCCGCCGAAGATA 1200
Query 974 GAGCACCCACC 984
||||| |||||
Sbjct 1201 GAGCATCCACC 1211
Score = 106 bits (57), Expect = 8e-22
Identities = 65/69 (94%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 1186 ACCGCCGAAGATAGAGCACCCACCTCCGGTTCCGGTTTACAAGCCGCCGCCGAAGATAGA 1245
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 864 ACCGCCGAAGATAGAGCACCCACCTCCGGTTCCGGTTTACAAGCCACCGCCAAAGATAGA 923
Query 1246 GCATCCACC 1254
| | |||||
Sbjct 924 GAAGCCACC 932
Score = 95.3 bits (51), Expect = 2e-18
Identities = 221/298 (74%), Gaps = 31/298 (10%)
Strand=Plus/Plus
Query 1121 CCGCCGAAGAAAGTTGATCCACCGCCGGTTCCAGTCCACAAGCCGCCGCCAAAGATAGTC 1180
||||| ||||||||||||||||||||||| ||||||||||| || || | |||| || |
Sbjct 1015 CCGCCTAAGAAAGTTGATCCACCGCCGGTGCCAGTCCACAAACCACCAACGAAGA-AG-C 1072
Query 1181 ATTCCACCGCCGAAGATAG-AGCACCCACCTCCGGTTCCGGTTTACAAGCCGCCGCCGAA 1239
|| ||||| |||| || | | ||||| |||||||| || ||||||||||||| ||
Sbjct 1073 CTT-GTCCGCCTAAGAAAGTTG-ATCCACCGCCGGTTCCAGTCCACAAGCCGCCGCCAAA 1130
Query 1240 GATAGAGCA-TCCA---CC-AATCTACA-TA-CCACCAGTAGTGATCCCG--AAGAAGCC 1290
||||| || |||| || || || | | ||||| ||| ||| | | |||||
Sbjct 1131 GATAG-TCATTCCACCGCCGAAGATAGAGCACCCACCTCCAGT--TCCGGTTTACAAGCC 1187
Query 1291 G-TGTCCTCCG-CCG-G--T--ACCAGTATACAAACCACCGGTGGTGATTCCGAAGAAGC 1343
| | || | | | | |||| | |||| |||||| | || | ||||||||
Sbjct 1188 GCCG-CCGAAGATAGAGCATCCACCAATCTACATACCACCAAT--TG--T--GAAGAAGC 1240
Query 1344 CGTGTCCTCCGCCGGTACCAGTATACAAACCACCGGCGGTGATACCAAAGAAGCCATG 1401
|||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||
Sbjct 1241 CGTGTCCTCCGCCGGTACCAATATACAAACCACCGGTTGTGATCCCCAAGAAGCCATG 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5