BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490644
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38800.1 | Symbols: ATMTN1, ATMTAN1, MTN1, MTAN1 | methylthi... 1495 0.0
> AT4G38800.1 | Symbols: ATMTN1, ATMTAN1, MTN1, MTAN1 | methylthioadenosine
nucleosidase 1 | chr4:18113161-18115133 REVERSE
LENGTH=1135
Length=1135
Score = 1495 bits (809), Expect = 0.0
Identities = 905/950 (95%), Gaps = 11/950 (1%)
Strand=Plus/Plus
Query 1 AAAGGGTCCAAAAACGAAT-AAC--TA--TCGCATTCGCCGGAGTTTCCAGCCGTTTCTT 55
||| ||||||||||||||| ||| || || ||||||||||||||||||||||||||||
Sbjct 12 AAAAGGTCCAAAAACGAATAAACTGTATCTCTCATTCGCCGGAGTTTCCAGCCGTTTCTT 71
Query 56 CCCGATTCTCGGATTTTTCTTGGGAATCAAACGCGTCGCCGAGAATCGGAAGAGAGGGAA 115
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 72 TCCGATTCTCGGATTTTTCCTGGGAATCAAACGCATCGCCGAGAATCGGAAGAGAGGGAT 131
Query 116 AAGGGTATGGCTCCTCATGGAGATGGATTAAGTGACATCG-AGAAACCTGA-G-C-TTGC 171
|||| ||||||||||||||||||||||||||||||||||| || ||||||| | | |||
Sbjct 132 AAGGTTATGGCTCCTCATGGAGATGGATTAAGTGACATCGAAG-AACCTGAGGTCGATGC 190
Query 172 TCAATCGGAGATTCTTCGTCCGATCTCCACAGTCGTCTTCGTCATCGCTATGCAAGCGGA 231
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 191 TCAATCGGAGATTCTTCGACCGATCTCCTCAGTCGTCTTCGTCATCGCTATGCAAGCGGA 250
Query 232 GGCTCTTCCTTTGGTCAACAAGTTCGGACTCTCTGAAACTACTGATTCGCCGCTTGGTAA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GGCTCTTCCTTTGGTCAACAAGTTCGGACTCTCTGAAACTACTGATTCGCCGCTTGGTAA 310
Query 292 AGGACTGCCCTGGGTTTTGTATCACGGCGTGCATAAAGATCTTCGAATCAATGTAGTTTG 351
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AGGATTGCCCTGGGTTCTGTATCACGGCGTGCATAAAGATCTTCGAATCAATGTAGTTTG 370
Query 352 CCCCGGAAGAGATGCAGCTTTAGGGATCGATAGTGTTGGAACTGTTCCTGCTTCTCTCAT 411
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 371 CCCCGGAAGAGATGCAGCTTTAGGGATCGATAGTGTTGGAACTGTTCCAGCTTCTCTCAT 430
Query 412 AACTTTTGCTTCTATCCAAGCATTAAAACCTGACATTATAATCAATGCTGGAACCTGCGG 471
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 431 AACTTTTGCTTCCATCCAAGCATTAAAACCTGACATCATAATCAATGCCGGAACCTGCGG 490
Query 472 TGGCTTTAAGGTTAAAGGAGCCAACATAGGCGACGTATTCCTTGTATCTGATGTTGTGTT 531
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 491 TGGCTTCAAGGTCAAAGGAGCCAACATAGGCGATGTATTCCTTGTATCTGATGTTGTGTT 550
Query 532 TCATGATAGAAGAATACCAATTCCGATGTTTGATCTGTATGGAGTTGGTCTTCGTCAGGC 591
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 551 TCATGATAGAAGAATACCAATTCCGATGTTTGATCTGTATGGAGTTGGTCTCCGTCAGGC 610
Query 592 ATTCTCGACACCCAATCTCCTCAAGGAACTCAATTTGAAGATTGGCAGGTTATCTACTGG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 ATTCTCGACACCCAATCTCCTCAAGGAACTCAATTTGAAGATTGGCAGGTTATCTACTGG 670
Query 652 TGACTCGTTGGATATGTCCACGCAAGATGAATCATTGATCATTGCCAATGATGCTACACT 711
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 671 TGACTCGTTGGATATGTCCACGCAAGATGAAACATTGATCATTGCCAATGATGCTACGCT 730
Query 712 AAAAGACATGGAGGGTGCTGCTGTGGCGTACGTGGCTGATCTTCTGAAAATACCAGTCGT 771
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 731 AAAGGACATGGAGGGTGCTGCCGTGGCGTATGTGGCTGATCTTCTGAAAATACCAGTCGT 790
Query 772 GTTCCTCAAAGCCGTGACCGATCTAGTGGACGGAGATAAACCTACTGCAGAAGAGTTCTT 831
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 791 GTTCCTCAAAGCCGTGACCGATCTAGTGGACGGAGATAAACCTACAGCAGAAGAGTTCTT 850
Query 832 GCAGAACTTGACAGTTGTTACCGCTGCACTAGAGGAAACTGCCACTAAAGTGATCAACTT 891
|||||||||||||||||| ||||||||| |||||| |||||| |||||||||||||||||
Sbjct 851 GCAGAACTTGACAGTTGTGACCGCTGCATTAGAGGGAACTGCTACTAAAGTGATCAACTT 910
Query 892 CGTCAATGGGAAAAACCTTTCAGACCTTTAACTTTTGTTCTCTTC-TTTT 940
| ||||||||| ||||||||| |||||||||||| |||||||||| ||||
Sbjct 911 CATCAATGGGAGAAACCTTTCGGACCTTTAACTTCTGTTCTCTTCCTTTT 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5