BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490646 Length=1583 Score E Sequences producing significant alignments: (Bits) Value AT4G38810.2 | Symbols: | Calcium-binding EF-hand family protei... 2113 0.0 > AT4G38810.2 | Symbols: | Calcium-binding EF-hand family protein | chr4:18115283-18119077 REVERSE LENGTH=1669 Length=1669 Score = 2113 bits (1144), Expect = 0.0 Identities = 1444/1576 (92%), Gaps = 72/1576 (5%) Strand=Plus/Plus Query 73 TTTGGGGTGTGTCAAGTTTCTGTTTTTCCTTTTCTCGTGCTTCCATCACGAGATCTCTCA 132 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 98 TTTTGGGTGTGTCAAGTTTCTGTTCTTCCTTTTCTCGTGCTTCCATCACGAGATATCTCA 157 Query 133 CAAGGCTCCCGCGACTCAAGAAAGATAAAG----AGAAAG-A-AAG--AAGATTCCATAA 184 |||||||| ||||||||||||||| ||||| |||||| | ||| |||||||||||| Sbjct 158 CAAGGCTCTCGCGACTCAAGAAAGGTAAAGATAAAGAAAGAAGAAGCAAAGATTCCATAA 217 Query 185 ATGGACATGAAAAGCAACAACCACCAGCAACAGCAACAAGTACTTGATGGCTCGGACATA 244 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218 ATGGACTTGAAAAGCAACAACCACCAGCAACAGCAACAAGTACTTGATGGCTCGGACATA 277 Query 245 GTTGAGCTGGTGGAAAACGAGAAAGTGTTCGACAAGTTTGTGGAACAAAAGTTTCAACAG 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 278 GTTGAGCTGGTGGAAAACGAGAAAGTGTTCGACAAGTTTGTGGAACAAAAGTTTCAACAG 337 Query 305 TTAGACCAAGATGAAGATGGTAAGCTCTCCGTGACTGAGTTACAACCCGCCGTTGCTGAT 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338 TTAGACCAAGATGAAGATGGTAAGCTCTCCGTGACTGAGTTACAACCCGCCGTTGCTGAT 397 Query 365 ATCGGCGCCGCTCTTGGTTTGCCTGCTCAAGGCACTTCTCCTGATTCTGATCACATCTAC 424 |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 398 ATCGGCGCTGCTCTTGGTTTGCCTGCTCAAGGAACTTCTCCTGATTCCGATCACATCTAC 457 Query 425 TCCGAGGTTCTAAACGAATTCACTCATGGGAGTCAAGAGAAAGTGAGCAAGACAGAGTTT 484 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 458 TCCGAGGTCCTAAACGAATTCACTCATGGGAGTCAAGAGAAAGTGAGCAAGACAGAGTTC 517 Query 485 AAAGAAGTGTTGTCGGACATTTTGCTGGGTATGGCTGCTGGTCTGAAACGTGATCCTATC 544 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 518 AAAGAAGTGTTGTCGGACATTTTGTTGGGTATGGCTGCTGGTCTGAAACGTGATCCTATC 577 Query 545 GTCATCCTCAGGATGGACGGTGAGGATCTCTCGGAGTTTGTCCACGGCCCTGGATACGAA 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 578 GTCATCCTCAGGATGGACGGTGAGGATCTCTCGGAGTTTGTCCACGGCCCTGGATATGAA 637 Query 605 ATCGA-ACTTGTTTCTGTCTTCTCAGAGCTCTCCAGTTGCGAGGACGCATCGCTCCGTGA 663 ||||| | ||||||| |||||||||||||||||| || ||||||||||||||||||| Sbjct 638 ATCGAGA-GCATTTCTGTTTTCTCAGAGCTCTCCAGTAGCAAGGACGCATCGCTCCGTGA 696 Query 664 TTGTATCGTCAAAGCTCTCCAGTCTCTTTCTGTTGATCATGGAATGCCTCCTTCCAACGA 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 697 TTGTATCGTCAAAGCTCTCCAGTCTCTTTCTGTTGATCATGGAATGCCTCCTTCCAACGA 756 Query 724 CCCATGGGTGATGAGCAACATTGTAGAACCAATTGTTGACTCTTGTCTTGATGAAGAAGA 783 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 757 CCCATGGGTGATGAGCAACATCGTAGAACCAATTGTTGACTCTTGTCTTGATGAAGAAGA 816 Query 784 TAAGAGAGAGAAGAGCGCGTCTCAGGAGAAATTCTTGGAGGCATTCAAGAGAGTCGTGGA 843 ||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 817 TAAAAGAGAGAAAAGCGCGTCTCAGGAGAGATTCTTGGAAGCATTCAAGAGAGTCGTGGA 876 Query 844 GAGAGTGGCTCAGCGTCTCAATGAACAACCCGTGATCGTTGCTCACAGCGAAAATA-CTT 902 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct 877 GAGTGTGGCTCAGCGTCTCAATGAACAGCCCGTGATCGTTGCTCACAGCGAAAACACCTT 936 Query 903 TCGATGGGAGCGGTGTCAGGAGGCTCTTGTCCAATAAATTCGAATTCGATAAGGCACTAA 962 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 937 T-GATGGGAGCGGTATCAGGAGGCTCTTGTCCAATAAATTCGAATTCGATAAGGCACTAA 995 Query 963 ACGTTG-CATTGGAGACGATTCCAAAAGACCGTCATGGTAAGGTGTCTAAAGAATATCTA 1021 |||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 996 ACGTTGCCA-TGGAGACGATTCCAAAAGACCGTCAGGGTAAGGTGTCTAAAGGATATCTA 1054 Query 1022 CGAGCTGTGCTTGACACTGTTGCACCATCTGCGACTTTACCACCGATAGGCGCTGTGTCC 1081 ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 1055 CGAGCTGTGCTTGACACTGTTGCACCATCGGCCACTTTACCACCAATAGGCGCTGTGTCC 1114 Query 1082 CAGATGGATAATATGATAATGGAAGCGTTGAAGATGGTGAATGGAGATGATGGAAATATG 1141 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1115 CAGATGGATAATATGATAATGGAAGCGTTGAAGATGGTGAATGGAGATGATGGAAATGTG 1174 Query 1142 GTGAATGAAGAAGAGTTTAAGAAAACAATGGCAGAGATATTGGGGAGTATAATGTTGCAG 1201 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1175 GTGAAGGAAGAAGAGTTTAAGAAAACAATGGCAGAGATATTGGGGAGTATAATGTTGCAG 1234 Query 1202 CTTGAGGGTAATCCGATATCGGTTTCCTCTAACTCGGTGGTTCACGAGCCGCTCACCTCG 1261 || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1235 CTCGAGGGTAGTCCCATATCGGTTTCCTCTAACTCGGTGGTTCACGAGCCGCTCACCTCG 1294 Query 1262 GCTACATTTCTGCAGCCGACTTTGAATGAAACAGAGGAGCCTTCAACCTAATCAT---A- 1317 ||||| ||||||| | | |||| || ||| |||||||||||||||| |||||||| | Sbjct 1295 GCTACCTTTCTGCCGTCAACTTCGACTGATACAGAGGAGCCTTCAAACTAATCATAGAAG 1354 Query 1318 -G----A-C-G-----G--G-----AATGTTATATGG-TTT--C---AGAGTTTTTTACC 1352 | | | | | | |||||||||||| ||| | ||| | |||||| Sbjct 1355 GGAATAAGCAGCACTAGCAGCAACAAATGTTATATGGTTTTGACTTTTGAG-TGTTTACC 1413 Query 1353 CCCAAAAGTTTTAGAGTAATGAGGAAAACCGTC-TTACTTTGCAGATGTATAATATTGAA 1411 ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct 1414 CCCAAAAGTTTTAGATTAATGAGGAAAACCGTCTTTACTTT-CAGATGTATAAAATTGAA 1472 Query 1412 AGTTTGGGGTTTCCTCTTGTGGGTGTGGTGATTATACTCACG-Ctttttcttttcttttt 1470 |||||||||||||||||||| |||||||||||| |||||| | |||||| |||| ||||| Sbjct 1473 AGTTTGGGGTTTCCTCTTGTTGGTGTGGTGATTCTACTCATGCCTTTTT-TTTTTTTTTT 1531 Query 1471 CTAATTACCAAGGGATGCAATGTTTACTGTG-TTTTT-ATTTCGTTATAAA-----TT-- 1521 ||||| |||| ||||||||||||||||| || ||||| ||||||||| ||| || Sbjct 1532 CTAATGACCATGGGATGCAATGTTTACTCTGTTTTTTAATTTCGTTA-AAATTTGTTTAC 1590 Query 1522 G-TT-T-A--C--G--T---T-T-ATGAAACATTTGAGTTATCTTTAAAAGTGGGAAATA 1567 | || | | | | | | | ||||||||||||||||||||||||||||| |||||| Sbjct 1591 GTTTATGATGCTTGAATGGCTATGATGAAACATTTGAGTTATCTTTAAAAGTGTGAAATA 1650 Query 1568 AAAATTGTGAAGTTAA 1583 || ||| ||||||||| Sbjct 1651 AATATTCTGAAGTTAA 1666 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78162248565 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5