BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490654 Length=2190 Score E Sequences producing significant alignments: (Bits) Value AT4G38890.1 | Symbols: | FMN-linked oxidoreductases superfamil... 3480 0.0 > AT4G38890.1 | Symbols: | FMN-linked oxidoreductases superfamily protein | chr4:18135800-18139206 REVERSE LENGTH=2291 Length=2291 Score = 3480 bits (1884), Expect = 0.0 Identities = 2093/2194 (95%), Gaps = 13/2194 (1%) Strand=Plus/Plus Query 1 ATGTCCGATGTAATAGCGGAGCTCGCGGCAGATACTAGTGTTGAAGGAGATGCAAAGCCT 60 ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| || Sbjct 107 ATGTCAGATGTAATAGCGGAGCACGCGGTGGATACTAGTGTTGAAGGAGATGCAAAGGCT 166 Query 61 GC-TTCACCGGTTCAATCGACGAAACAGTTCTCTGTGTATGAAGCGACTTCGCAAGAGCT 119 || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 167 GCGTT-ACCGGTTCAATCGACGAAACAGTTCTCTGTGTATGAAGCGACTTCGGAAGAGCT 225 Query 120 TATAGAACGATCAATGGCTCCTATCAAGAAGGAGTTCCTATGTCCTCCTCCTCCAAGCCG 179 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 226 TATAGAACGATCAATGGCTCCTATTAAGAAGGAGTTCCTTTGTCCTCCTCCTCCAAGCCG 285 Query 180 TTCCGGGAAGCAAAATGACGCCGCCGATGTTAGGGCGCCTCAATCGGGCTTGGTTCAGGA 239 ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 286 TTCCGTGAAGCAAAATGATGCCGCCGATGTTAGGGCGCCTCAATCGGGTTTGGTTCAGGA 345 Query 240 GAAGAAATCTAAACGACAACTCAAACGGGAACGCCGCGAGCAATCTACCATCAATCTCTG 299 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 346 GAAGAAATCTAAACGACAACTGAAACGGGAACGCCGCGAGCAATCTACGATCAATCTCTG 405 Query 300 TCCGCAGGTGGCGAGAACAGAAGACGTTGATTCATGTCAGTATAAAGACAAGTGCCGGTT 359 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 TCCGCAGGTTGCGAGAACAGAAGACGTTGATTCATGTCAGTATAAAGACAAGTGCCGGTT 465 Query 360 TAATCATGATATTGAGGCTTTCAAGGCTCAGAAACCAGATGATATAGAGGGGCAATGCCC 419 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 466 TAATCATGATATTGAGGCTTTCAAGGCTCAGAAGGCAGATGATATAGAGGGGCAATGCCC 525 Query 420 ATTTGTGGCCTCTGAAATGAAGTGTGCATATGGTTTATCATGTAGATTCCTAGGCACTCA 479 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 526 ATTTGTGGCCTCTGGAATGAAGTGTGCATATGGTTTATCATGTAGATTCTTAGGCAGTCA 585 Query 480 CAGAGATATTGCTGGTAATTCTGATGACAAGGAAAAATCAGAGATGAACTTTTTTAACAA 539 |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 586 CAGAGATATTACTGGTAATTCAGATGACAAGGAAAAATCAGAGATGAACTTTTTTAACAA 645 Query 540 AGAGACCCAGAGGCTTCTCTGGAAAAATAAGATGACTTTTACCAACGCAGATGCAAAACT 599 |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| Sbjct 646 AGAGACACAGAGGCTTCTGTGGAAAAATAAGATGACTTTTACAAACGCAGATGCGAAACT 705 Query 600 CAAGTCCCTCGGTCTGTTGGGGCATGCCaaaaaaaGCAACGCTGCCGAAGAAAATAGCAC 659 |||||||||||||||||||| ||||||||||||||||| |||||||| |||| || | | Sbjct 706 TAAGTCCCTCGGTCTGTTGGGACATGCCAAAAAAAGCAATGCTGCCGAGGAAATTACCGC 765 Query 660 AGAAAAAACTCAAAATGGTGTGAACGGCACTCAAGCAACTGATGCAGCGGTTGACTCAGC 719 ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| Sbjct 766 AGAAAAAACTCAAAATGGTATGAACGGCACTCAAGCAACTGAAGTAGCGGTTGACTCAGC 825 Query 720 TGTCAGTTCTGAGCCTACATCCGAAATGATACAAGATGCTGATATTCCTGGACCATTAAA 779 |||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| | Sbjct 826 TGTCAGTTCTGAGCATACATCAGAAATGATACAAGATGTTGATATTCCTGGACCATTAGA 885 Query 780 AACTGAGGAAGTTCGTCCCATGAAAAAGGCTAAATCTGAGGA-CAAAGAGAATTCTAAAC 838 |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| Sbjct 886 AACTGAGGAAGTTCGTCCCATGAAAAAGGCAAAATCTGAGGACCAAA-AGAATTCTAAAA 944 Query 839 CTGGAGATGTTGGTGGAGTTAATGATGGCGTGAAAGTGGAAGAGGATGCGAAAAAGAATG 898 |||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| Sbjct 945 CTGGAGATGTTGGTGGAGTTTATGATGGCGTGAAATTGGAAGAGGAAACGAAAAAGAATG 1004 Query 899 GGTATTCTATTTCAAAAGCTGACGTAGAAGATGAGGATAGTATCAAAATTGTTGAAACTG 958 ||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 1005 GGTATCCTACTTCAAAAGCTAACGTAGAAGATGAGGATAGCATCAAAATTGTTGAAACTG 1064 Query 959 ATAGTAGTTTAAAGTTGCACCCTCGTGAAAAGAAAAAGTTAATTGATTTTAGGGATAAGT 1018 |||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 1065 ATAGTAGTCTAAAGTTGCACCCTCGAGAAAAGAAAAAGCTAATTGATTTTAGGGATAAGT 1124 Query 1019 TGTACCTTGCACCCCTAACAACTGTGGGCAATCTACCCTTCCGAAGACTTTGTAAAGTGT 1078 |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1125 TGTACCTTGCACCCTTAACAACCGTGGGCAATCTTCCCTTCCGAAGACTTTGTAAAGTGT 1184 Query 1079 TGGGAGCAGATGTGACTTGTGGTGAGATGGCAATGTGCACAAATCTTTTGCAGGGCCAAG 1138 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1185 TGGGAGCAGATGTGACTTGTGGTGAGATGGCTATGTGCACAAATCTTTTGCAGGGCCAAG 1244 Query 1139 CTTCAGAATGGGCTCTGCTTAGACGGCATTCTTCGGAAGATCTGTTTGGTGTTCAGATTT 1198 |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1245 CTTCTGAATGGGCTCTGCTTAGACGACATTCATCGGAAGATCTGTTTGGTGTTCAGATTT 1304 Query 1199 GCGGTTCTTATCCTGACACGGTGTCGCGCACAGTTGAACTTATAGACCGAGAGTGCACCG 1258 ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | Sbjct 1305 GCGGTTCTTATCCTGACACGGTGTCGCGCGTAGTTGAACTTATAGACCGAGAATGCACTG 1364 Query 1259 TTGATTTCATAGACATCAACATGGGTTGCCCGATAGATATGGTTGTCAACAAAAGTGCTG 1318 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 TTGATTTCATAGATATCAACATGGGTTGCCCGATAGATATGGTTGTCAACAAAAGTGCTG 1424 Query 1319 GTTCAGCTCTTCTCAACAAACCATTACGAATGAAGAACATCGTGGAAGTCTCTTCTTCCA 1378 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1425 GTTCAGCTCTTCTCAACAAACCATTACGGATGAAGAACATCGTGGAAGTCTCTTCTTCCA 1484 Query 1379 TTGTTGAAACACCTATTACTATCAAGGTACGAACAGCATTCTTTGAGGGTAAGAACCGGA 1438 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1485 TTGTTGAAACACCTATCACTATCAAGGTACGAACAGCATTCTTTGAGGGTAAGAACCGGA 1544 Query 1439 TAGATTCATTAATTGCAGATATCGGAAATTGGGGAGCCACTGCAGTGACTATTCATGGGC 1498 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1545 TAGATTCTTTAATTGCAGATATCGGAAACTGGGGAGCCACTGCAGTGACTATTCATGGGC 1604 Query 1499 GATCAAGACAGCAACGTTATAGCAAGTCTGCGGATTGGGACTATATATACCAGTGTACCA 1558 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1605 GGTCAAGACAGCAACGTTATAGCAAGTCTGCAGATTGGGACTATATATACCAGTGTACCA 1664 Query 1559 AAAACGCTTCTACTAACCTACAAGTTATAGGAAATGGAGATGTTTACTCTTATTTAGACT 1618 |||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||| Sbjct 1665 AAAACGCTACTACTAACCTACAGGTTATAGGAAATGGAGATGTGTACTCATATTTAGACT 1724 Query 1619 GGAACAAACACAAGTCTGACTGTCCTGAGTTGTCTAGCTGCATGATTGCTCGTGGAGCAC 1678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1725 GGAACAAACACAAGTCTGACTGTCCTGAGTTGTCTAGCTGCATGATTGCTCGTGGAGCAC 1784 Query 1679 TGATCAAGCCTTGGGTATTTACTGAAATTAAAGAGCAACGGCATTGGGACATTACCTCCG 1738 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1785 TGATCAAGCCTTGGATCTTTACTGAAATTAAAGAGCAACGGCATTGGGACATTACCTCTG 1844 Query 1739 GAGAAAGACTCAACATCATGAAGGACTTCGTACGTTTTGGTCTTCAACATTGGGGATCCG 1798 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1845 GAGAAAGACTTAACATCATGAAGGACTTCGTACGTTTTGGTCTTCAACATTGGGGATCCG 1904 Query 1799 ACACGAAAGGAGTTGAGACAACTAGGCATTTCTTGCTGGAGTGGCTAAGCTACACGTTTA 1858 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1905 ACACGAAAGGAGTTGAGACAACTAGGCATTTCTTGCTGGAGTGGCTAAGCTACACATTTA 1964 Query 1859 GGTACATACCTGTTGGTTTGCTTGATGTGATCCCGCAGCAAATCAACTGGCGTCCACCTT 1918 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1965 GGTACATACCTGTCGGTTTGCTTGATGTGATCCCGCAGCAAATCAACTGGCGTCCGCCTT 2024 Query 1919 CATACTTTGGTCGTGATGATCTCGAGACACTCATGATGTCTGAATCTGCGGGTGACTGGG 1978 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2025 CATACTTTGGTCGTGATGATCTCGAGACACTCATGATGTCTGAATCTGCGGGTGACTGGG 2084 Query 1979 TGCGTATATCGGAAATGCTGCTTGGAAAGGTTCCGGAGGGCTTCACGTTTGCCCCCAAGC 2038 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2085 TGCGGATATCGGAAATGCTGCTTGGAAAGGTTCCGGAGGGCTTCACATTTGCCCCCAAGC 2144 Query 2039 ACAAATCCAACGCATATGACCGAGCTGAAAACGGCTGATTCAACCACATCTTCTGTAATA 2098 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 2145 ACAAATCCAACGCATATGACAGAGCTGAAAACGGCTGATTCAACCACATTTTCTGTAATA 2204 Query 2099 TCAATTCTCATTC-AAAACATGTCTGAAACATCATTCTGTAATAtttttttatttttGAC 2157 |||| ||||||| |||||||||||||||| ||||||||||||||||||| ||| Sbjct 2205 TCAAATCTCATTTTAAAACATGTCTGAAACGTCATTCTGTAATATTTTTT-------GAC 2257 Query 2158 TGATTAAATAAA-GACAATGCGATGATTTCTTTG 2190 |||||||||||| ||||||||||||||||||||| Sbjct 2258 TGATTAAATAAAAGACAATGCGATGATTTCTTTG 2291 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108633979380 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5