BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490671 Length=2002 Score E Sequences producing significant alignments: (Bits) Value AT4G39030.1 | Symbols: EDS5, SID1 | MATE efflux family protein ... 2907 0.0 AT4G39040.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain ... 84.2 4e-15 > AT4G39030.1 | Symbols: EDS5, SID1 | MATE efflux family protein | chr4:18185667-18189224 FORWARD LENGTH=2031 Length=2031 Score = 2907 bits (1574), Expect = 0.0 Identities = 1898/2045 (93%), Gaps = 59/2045 (3%) Strand=Plus/Plus Query 1 ATCTCGAGGCGCCAAAAACAAC--C---AAAAACTTCATAGCGGTGATCAGATTCACCAA 55 |||||||||||||||||||||| | |||||||||| ||||||||||||||||||| | Sbjct 3 ATCTCGAGGCGCCAAAAACAACAACAAAAAAAACTTCAGAGCGGTGATCAGATTCACCGA 62 Query 56 TTTTCTCTCAAAATGCTAATCAAATCCCAAAGATTGACCCTTTTCTCTCCTCTCTT-TCC 114 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | | Sbjct 63 TTTT-TCTCAAAATGCTAATCAAATCCCAAAGATTGACTCTTTTCTCTCCTCTCTTGT-C 120 Query 115 CAAACCAAGACCGATTCCGGTTAACTACCACCAGACACTGGTCGCAGAATCGGTGCTAAC 174 |||| |||||| ||| |||||||||| |||||| ||||||||||||||||||||| |||| Sbjct 121 CAAAACAAGACGGATCCCGGTTAACTCCCACCAAACACTGGTCGCAGAATCGGTGATAAC 180 Query 175 TCGGAGAAAACTCGGTGCGATCACCGCAACTCCGAGTTTCCA-AGGAAATCCGGTGGTGA 233 |||||||| |||||||||||||||||||||||||||||| || | |||||||||||||| Sbjct 181 TCGGAGAACACTCGGTGCGATCACCGCAACTCCGAGTTTTCATA-AAAATCCGGTGGTGA 239 Query 234 CTCCG-CGGAGAATCAAATTAGAGCA-AGTTACGAGGAACTGCATCGA-AATTGATCGGG 290 | || ||||| |||||||||||| | |||||||||||||||| || | ||||||||||| Sbjct 240 -TTCGACGGAGGATCAAATTAGAG-AGAGTTACGAGGAACTGCGTC-AGAATTGATCGGG 296 Query 291 AAATCGAC------gaagaagaagaggagaagaagagagGGGATCTGGTGAAACAGAGCA 344 |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 297 AAATCGACGAAGAAGAAGAAGAAGAGGAGAAGGAGAGAGGGGATCTGGTGAAACAGAGCA 356 Query 345 TATGGGAACAGATGAAAGAGATAGTGAAGTTCACAGGTCCGGCGATGGGGATGTGGATTT 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TATGGGAACAGATGAAAGAGATAGTGAAGTTCACAGGTCCGGCGATGGGGATGTGGATTT 416 Query 405 GTGGACCGTTGATGAGTCTCATCGACACGGTCGTCATCGGCCAAGGAAGCTCCATCGAAC 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 GTGGACCGTTGATGAGTCTCATCGACACGGTCGTCATCGGCCAAGGAAGCTCCATCGAAC 476 Query 465 TCGCTGCTCTTGGACCCGGAACAGTACTATGCGACCACATGAGTTACGTCTTCATGTTCC 524 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 477 TCGCTGCTCTTGGACCGGGAACAGTACTATGCGACCACATGAGTTATGTCTTCATGTTCC 536 Query 525 TCTCCGTGGCTACATCCAACATGGTCGCAACTTCTCTTGCCAAACAGGACAAGAAAGAAG 584 ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| Sbjct 537 TCTCCGTGGCTACATCCAATATGGTTGCTACTTCTCTTGCCAAACAGGACAAGAAAGAAG 596 Query 585 CACAACATCAAATCTCTGTCTTGCTCTTCGTTGGATTGGTTTGTGGACTAATGATGCTTC 644 | ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 597 CGCAACATCAAATCTCTGTTTTACTCTTTATTGGATTGGTTTGTGGACTAATGATGCTTC 656 Query 645 TGCTCACAAGATTATTCGGTCCTTGGGCTGTTACTGCTTTTACAAGGGGGAAGAACATTG 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 TGCTCACAAGATTATTCGGTCCTTGGGCTGTTACTGCTTTTACAAGGGGGAAGAACATTG 716 Query 705 AGATTGTCCCTGCAGCTAATACA-TATATTCAGATTCGAGGCTTAGCGTGGCCGTTTATC 763 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 717 AGATTGTCCCTGCAGCTAATA-AGTATATTCAGATTCGAGGCTTAGCGTGGCCGTTTATC 775 Query 764 CTTGTTGGATTGGTTGCTCAAAGCGCAAGTCTTGGAATGAAGAACTCATGGGGACCTCTT 823 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 776 CTTGTTGGATTGGTTGCTCAAAGTGCAAGTCTTGGAATGAAGAACTCATGGGGACCTCTT 835 Query 824 AAGGCTTTAGCTGCAGCAACGATCATTAACGGTCTTGGTGATACAATCTTATGCTTGTTT 883 || || |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 836 AAAGCATTAGCTGCAGCAACGATCATTAACGGTCTTGGCGATACAATCCTATGCTTGTTT 895 Query 884 CTTGGGCAAGGTATCGCTGGAGCTGCTTGGGCAACAACTGCTTCTCAGATTGTTTCGGCT 943 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 896 CTTGGACAAGGTATCGCTGGAGCTGCTTGGGCAACAACTGCTTCACAGATTGTTTCGGCT 955 Query 944 TATATGATGATGGATTCTCTGAACAAAGAAGGCTACAATGCTTACTCTTTTGCGATCCCT 1003 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 TATATGATGATGGATTCTCTGAACAAAGAAGGCTACAATGCTTACTCTTTTGCGATCCCT 1015 Query 1004 TCACCGCAAGAACTATGGAAGATCTCTGCACTCGCTGCACCTGTTTTTATCTCCATCTTC 1063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1016 TCACCGCAAGAACTATGGAAGATCTCTGCACTCGCTGCACCTGTTTTTATCTCCATTTTC 1075 Query 1064 TCCAAGATTGCTTTCTACTCTTTCATCATCTACTGTGCTACTTCCATGGGAACTCACGTT 1123 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1076 TCCAAGATTGCTTTCTACTCTTTCATAATTTACTGTGCTACTTCCATGGGAACTCACGTT 1135 Query 1124 TTAGCCGCTCATCAGGTGATGGCTCAGACGTACAGGATGTGCAACGTATGGGGTGAGCCA 1183 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1136 TTAGCCGCTCATCAGGTGATGGCTCAGACGTATAGGATGTGCAATGTATGGGGTGAGCCA 1195 Query 1184 CTCTCTCAAACGGCTCAGTCCTTTATGCCAGAGATGTTATATGGTGCGAACCGTAACCTT 1243 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1196 CTCTCTCAAACGGCTCAGTCATTTATGCCAGAGATGTTATATGGTGCGAACCGTAATCTT 1255 Query 1244 CCAAAGGCTAGAACGTTGCTTAAGTCCCT-AGTGATTATTGGAGCCACCCTTGGATTAGT 1302 || |||||||||||||||||||||||||| | |||||||||||||||| ||||||||||| Sbjct 1256 CCCAAGGCTAGAACGTTGCTTAAGTCCCTGA-TGATTATTGGAGCCACGCTTGGATTAGT 1314 Query 1303 CTTGGGAGTTATCGGAACAGCGGTTCCAGGCCTGTTTCCTGGTGTCTACACACATGATAA 1362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 CTTGGGAGTTATCGGAACAGCGGTTCCAGGCCTGTTTCCTGGTGTCTACACACATGATAA 1374 Query 1363 AGTCATCATATCCCAGATGCATAAATTGCTTATACCTTTCTTCATGGCGTTGTCTGCATT 1422 ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 1375 AGTCATCATATCCGAGATGCATAGACTGCTTATACCTTTCTTCATGGCGTTGTCTGCATT 1434 Query 1423 GCCTATGACAGTATCCCTCGAGGGTACATTGCTGGCGGGACGTGATCTCAAATTCGTCAG 1482 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 GCCCATGACAGTATCCCTCGAGGGTACATTGCTGGCGGGACGTGATCTCAAATTCGTCAG 1494 Query 1483 CTCGGTGATGAGTTCAAGCTTCGTTCTTGGCTGTCTCACACTAATGTTCGTGACACGGAG 1542 ||| |||||||||||||||||| | |||| |||||||||||||||||||||||| | || Sbjct 1495 CTCAGTGATGAGTTCAAGCTTCATAATTGGTTGTCTCACACTAATGTTCGTGACAAGAAG 1554 Query 1543 TGGCTATGGTTTACTCGGCTGCTGGTTCGTTCTCGTTGGATTTCAATGGGGTCGGTTTGG 1602 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1555 TGGCTATGGTTTACTCGGCTGCTGGTTCGTTCTCGTCGGATTTCAATGGGGCCGGTTTGG 1614 Query 1603 TCTGTATCTACGACGGCTTCTTTCGCCTGGAGGCATACTTAATTCGGATGGGATGAGTCC 1662 ||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 1615 TCTATATCTACGACGGCTTCTTTCGCCTGGAGGCATACTTAATTCAGATGGGCCGAGTCC 1674 Query 1663 ATATACGGCGGAGAAGATCAAATCCATTTA-GTCTCAGTATGATGATTTCATTGATTATC 1721 ||| |||| ||||||||| ||||||||||| |||||||| ||||||| |||||||||||| Sbjct 1675 ATACACGGTGGAGAAGATTAAATCCATTTAAGTCTCAGTTTGATGATCTCATTGATTATC 1734 Query 1722 TAAAGAGTTTGCCAACAAATGGCTAATTATGATATATCAGGCACCaaaaa-aaGCAA-GT 1779 ||| ||||||||||||||||||||||||||||||||||||||||||| ||| || | Sbjct 1735 TAA-GAGTTTGCCAACAAATGGCTAATTATGATATATCAGGCACCAATGTCAAGAAACGG 1793 Query 1780 C-ACATCTTATTGTCAACTTCtttt-tttGGTCAGAGGCTCAATGCAAATCTAAAGCATA 1837 | | || | ||||||||||| |||| ||||||||||||||||||| |||| ||||||||| Sbjct 1794 CTA-AT-T-ATTGTCAACTT-TTTTCTTTGGTCAGAGGCTCAATGTAAATTTAAAGCATA 1849 Query 1838 ATAGACAAATAATATTTA-A-GTGTGGTTAGTTCAATCAGTTAGGAAAA-ATCAAATTCA 1894 ||||||||||||||| || | ||||||||||||||||||||||| |||| |||||||||| Sbjct 1850 ATAGACAAATAATATATACAAGTGTGGTTAGTTCAATCAGTTAG-AAAAGATCAAATTCA 1908 Query 1895 CTGATAGGTTCTTTTGTGACTCGTCTCTTC--ATCAGAGGAGAATTTG--A-A-----T- 1943 ||||||| | | | | | | |||| | || ||||||||||| | | | Sbjct 1909 CTGATAGAT-CGACTCTT-CACAAAGCTTCCCAGCAAAGGAGAATTTGGCATAAAAGATC 1966 Query 1944 ---GTGATTGTTTTTCTAATTGTATTCTT---GAAGAAATGAAAATGCATCACTACTCTT 1997 |||||||| |||||||||||||| || | |||||||||||||||||||||||||| Sbjct 1967 AATGTGATTGTATTTCTAATTGTATTATTATTGGAGAAATGAAAATGCATCACTACTCTT 2026 Query 1998 GAGAT 2002 ||||| Sbjct 2027 GAGAT 2031 > AT4G39040.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr4:18189072-18190556 REVERSE LENGTH=1089 Length=1089 Score = 84.2 bits (45), Expect = 4e-15 Identities = 59/65 (91%), Gaps = 3/65 (5%) Strand=Plus/Minus Query 1941 AATGTGATTGTTTTTCTAATTG---TATTCTTGAAGAAATGAAAATGCATCACTACTCTT 1997 ||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||| Sbjct 1001 AATGTGATTGTATTTCTAATTGTATTATTATTGGAGAAATGAAAATGCATCACTACTCTT 942 Query 1998 GAGAT 2002 ||||| Sbjct 941 GAGAT 937 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99196276920 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5