BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490677
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39090.1 | Symbols: RD19, RD19A | Papain family cysteine pro... 2025 0.0
> AT4G39090.1 | Symbols: RD19, RD19A | Papain family cysteine protease
| chr4:18215556-18217482 REVERSE LENGTH=1533
Length=1533
Score = 2025 bits (1096), Expect = 0.0
Identities = 1204/1257 (96%), Gaps = 4/1257 (0%)
Strand=Plus/Plus
Query 35 AAATCAAATGGAtcgtcttaagctttgtttctccgtcttcgttttgtttttctttctcgt 94
|||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||
Sbjct 150 AAATCAAATGGATCGTCTTAAGCTTTATTTCTCCGTTTTCGTTTTGTCTTTCTTTATCGT 209
Query 95 ctccgtttcgtcgtctGATGTCAACGACGGCGATGATCTCGTGATCCGTCAGGTGGTTGG 154
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 CTCGGTTTCGTCGTCTGATGTCAACGACGGCGATGATCTCGTGATCCGTCAGGTGGTTGG 269
Query 155 TGGAGCCGAGCCCCAGGTTTTGACCTCCGAGGATCACTTTTCTCTGTTCAAGAGCAAGTT 214
|||||||||||| |||||||||||||| ||||||||||||||||| |||||| | |||||
Sbjct 270 TGGAGCCGAGCCTCAGGTTTTGACCTCAGAGGATCACTTTTCTCTCTTCAAGCGGAAGTT 329
Query 215 CGGGAAGGTGTACGCATCCAACGAGGAGCATGACTACAGATTCTCGGTTTTCAAGGCGAA 274
||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 330 CGGGAAGGTCTACGCTTCCAACGAGGAGCATGACTATAGATTCTCGGTTTTCAAAGCGAA 389
Query 275 TCTGAGGCGAGCGAGGCGTCACCAGAAGTTGGATCCGTCGGCG-CGTCATGGTGTAACGC 333
||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 390 TCTCAGGCGAGCGAGGCGTCACCAGAAGTTGGATCCGTCGGCGAC-TCATGGTGTTACGC 448
Query 334 AGTTCTCAGATCTGACTCGGTCTGAGTTCCGGAAGAAGCATTTGGGGGTTAGAGGTGGCT 393
||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 449 AGTTCTCAGATCTGACTCGGTCTGAGTTCCGTAAGAAGCACTTGGGGGTTAGAAGTGGCT 508
Query 394 TTAAGCTTCCTAAAGATGCCAACAAGGCTCCGATTCTCCCTACCGAAAATCTCCCGGAGG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 509 TTAAGCTTCCTAAAGATGCCAACAAGGCTCCGATTCTCCCTACCGAAAATCTCCCTGAGG 568
Query 454 ACTTTGATTGGAGAGATCGTGGTGCTGTTACCCCCGTCAAGAATCAGGGATCTTGCGGCT 513
| |||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||||
Sbjct 569 ATTTTGATTGGAGAGATCATGGCGCCGTTACTCCCGTCAAAAATCAGGGATCTTGCGGCT 628
Query 514 CTTGCTGGAGTTTCAGCGCCACTGGAGCTTTGGAAGGTGCTAACTTCCTCGCTACCGGCA 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 CTTGCTGGAGTTTCAGCGCCACTGGAGCTTTGGAAGGTGCTAACTTCCTCGCTACCGGCA 688
Query 574 AACTCGTCAGCCTCAGCGAACAACAGCTCGTCGACTGTGATCACGAGTGTGATCCAGAGG 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 689 AACTCGTCAGCCTCAGCGAACAACAGCTCGTCGACTGTGATCACGAGTGTGATCCCGAGG 748
Query 634 AGGCAGGTTCCTGCGACTCTGGTTGCAATGGTGGGCTAATGAACAGCGCTTTTGAATACA 693
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 AGGCAGATTCCTGCGACTCTGGTTGCAATGGTGGGCTAATGAACAGCGCTTTTGAATACA 808
Query 694 CCCTCAAAACCGGAGGCCTCATGAAAGAAGAAGACTATCCTTACACCGGAAAGGACGGCA 753
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 CCCTCAAAACCGGAGGGCTCATGAAAGAAGAAGACTATCCTTACACCGGAAAGGACGGCA 868
Query 754 AGACCTGCAAGTTAGACAAGTCCAAGATCGTTGCCTCTGTCTCCAACTTCAGTGTTATCT 813
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 AGACCTGCAAGCTAGACAAGTCCAAGATCGTTGCCTCTGTCTCCAACTTCAGTGTTATCT 928
Query 814 CCATTGATGAAGAACAGATTGCTGCAAATCTTGTCAAGAACGGTCCTCTTGCTGTAGCCA 873
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 929 CCATTGATGAAGAACAGATTGCTGCAAACCTTGTCAAGAACGGACCTCTTGCTGTAGCCA 988
Query 874 TCAACGCTGGCTATATGCAGACTTACATTGGAGGAGTCTCGTGCCCTTACATATGCACCA 933
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 989 TCAACGCTGGCTATATGCAGACTTACATTGGAGGAGTCTCATGCCCTTACATATGCACCA 1048
Query 934 GGAGGCTCAACCACGGTGTCTTATTGGTCGGTTATGGATCCGCAGGTTACGCTCCAGCTA 993
|||||||||||||||||||||||||||| || |||||| | |||||||||||||| ||||
Sbjct 1049 GGAGGCTCAACCACGGTGTCTTATTGGTTGGCTATGGAGCGGCAGGTTACGCTCCGGCTA 1108
Query 994 GGTTCAAGGAGAAGCCTTACTGGATCATCAAGAACTCGTGGGGAGAGACTTGGGGTGAGA 1053
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1109 GGTTCAAGGAGAAGCCTTACTGGATCATCAAGAACTCGTGGGGAGAGACTTGGGGTGAAA 1168
Query 1054 ATGGTTTCTACAAAATCTGCAAAGGCCGTAACATTTGTGGCGTTGACAGTCTTGTCTCCA 1113
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 1169 ATGGTTTCTACAAAATCTGCAAAGGCCGTAACATTTGTGGTGTTGACAGTATGGTCTCCA 1228
Query 1114 CAGTTACAGCCACCGTCTCAGCCACCGCCCATTAAGCATCTCGTCAATAAGTTTTATTTA 1173
| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1229 CTGTTGCAGCCACCGTCTCAACCACCGCCCATTAAGCATCTCGTCAATAAGTTTTAATTA 1288
Query 1174 CTTTGGTGATTTGTATGAGCGAGCTCTCTTTGCGCTGCTGACTCTCT--ATTTATCTCTG 1231
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1289 CTTTGGTGATTTGTATGAGCGAGCTCTCTTTGCGCTGCTGACTCTCTCTATTTATCTCTG 1348
Query 1232 CGTCTTGCTTGTAAATAAAATGCATTCTATTGAGCAAAACCGTACAATGCTCGTTAG 1288
| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1349 CTTCTTGCTTGTAAATAAAATGCGTTCTATTGAGCAAAACCGTACAATGCTCATTAG 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63353087790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5