BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490697
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39240.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2047 0.0
> AT4G39240.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18269150-18270787 REVERSE LENGTH=1457
Length=1457
Score = 2047 bits (1108), Expect = 0.0
Identities = 1314/1412 (93%), Gaps = 19/1412 (1%)
Strand=Plus/Plus
Query 1 AGCGGTTATGCCTTATTCGGTTGCGAGTTCGAGCTCTGTAAGCTCAATCGCCGAAGAACC 60
|||||||||||||| ||| | |||||||||||||| |||||||||||||| ||||||||
Sbjct 55 AGCGGTTATGCCTTTTTCCGCCGCGAGTTCGAGCTCCGTAAGCTCAATCGCTGAAGAACC 114
Query 61 GCCGCCAAAGAAGCAGCTTGATCTGTCACCGTCGTCTTCATCGTCTCTGTTACTACTTCC 120
|||||||||||| |||| ||||| || ||||| | |||||||| |||||||||||||||
Sbjct 115 GCCGCCAAAGAAACAGCATGATCCATCGCCGTCCTGTTCATCGTATCTGTTACTACTTCC 174
Query 121 AGATGAAATCATTCTGAATTGCTTAGCACGCTTGCCGAGATGTTACTACCCGGTGATTTC 180
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 175 AGACGAAATCATTCTGAATTGCTTAGCACGCTTGCCGAAATGTTACTACCCGGTGATTTC 234
Query 181 ACTCGTCTCCAAGACCTTCAGGCGTCTCATCGCTTCGCCGGAGATCTACGTCGAACGGTC 240
|||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||||
Sbjct 235 ACTCGTCTCCAAGACCTTTAGGCGTCTCATAGCTTCACCGGAGATCTACGTTGAAAGGTC 294
Query 241 ATTACTCCGCCGCACTGAGCGTGTTCTTTATGTTGTGCTTAGATCTCACGCTACGGAAAC 300
|||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 295 ATTACTTCGCCGCACCGAGCGTGTCCTTTATGTTGTGCTTAGATCTCACGCTACAGAAAC 354
Query 301 TCCTCGATGGTACACTCTCAATTTCAAACCCTTTGGAAATGATTCAATTAACCATAGATT 360
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 355 TCCCCGATGGTACACTCTCAATTTCAAACCCTTTGGAAATGATTCAAATAACCATAGATT 414
Query 361 GGTTCCGATTCCGTCGTTTCCTTCGATTCCTTGCTGGGGAATGTCAATTGTCGCTATTGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GGTTCCGATTCCGTCGTTTCCTTCGATTCCTTGCTGGGGAATGTCAATTGTCGCTATTGA 474
Query 421 ATCTGAAATTTACGTCCTTGGTGGATGCATCGATGACGAATTGGTCTCCACTGGGTTTGT 480
||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 475 TTCTGAAATTTACGTCCTTGGTGGATGCATTGATAATGAATTGGTCTCCACTGGGTTTGT 534
Query 481 TGTCGAATGTCCATCTCACACGTGTCGTCTCCTCCCTAGCATGAAGCAAGCACGTGGCTG 540
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 535 CGTCGAATGTCCATCTCACACGTGTCGTCTCCTCCCTAGCATGAAGCAGGCACGTGGCTG 594
Query 541 TGCCGCCGTGGGATTCGTCGACGGGAAACTGTATGTAATCGGAGGTTGTAACCCTCTGTC 600
|||||||||||||| | || |||||| |||||||||||||||||||||||||||||||
Sbjct 595 CGCCGCCGTGGGATTTTTTGATGGGAAATTGTATGTAATCGGAGGTTGTAACCCTCTGTC 654
Query 601 TGTGAATTGGGTTGAGGCTTTTGACCTAAAGACTCAAACTTGGGAGTCTGTTTTGGGTGT 660
|||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 655 TGTGAATTGGGTAGAGGCTTTTGATCTAAAGACTCAAACTTGGGAGTCTGGTTTGGGTGT 714
Query 661 TCATAATGTGGAAATGCATGACTTAACCATCAGAAGTTTTGCGATAGATGGTAAGATTTA 720
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 715 TAATAATGTGGAAATGCATGACTTAACCATCAGAAGTTTTGCGATAGATGATAAGATTTA 774
Query 721 CATTATGGATCGGAAGAATAGCTTTGTTTACGATCCTAAAGAAGGTA-GATTGGAGACTG 779
|||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 775 CATTATGGATCGAAAGAATAGCTTTGTTTATGATCCTAAAGAAGGTACG-TTGGAGACTG 833
Query 780 ATGAGTTGTTGGACACACAATGGAGTGTTGGTTCTTGCGTCATTGATGGCAGGATTTACA 839
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 834 ATGAGTTGTTGGACACACAATGGAGTGTTGGTTCTTGCGTCATTGATGGAAAGATTTACA 893
Query 840 CTTTTGGTAGCAAGAATAGAATATGGGTGTTTGATCCAGTTGCCATGGTTTGGGATCGTT 899
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 894 CTTTTGGTAGCAAGAATAGAATATGGGTGTTTGATCCAATTGCCATGGTTTGGGATCGCT 953
Query 900 TGAAGGGTCTCGACGATCTTCCTGACAAGCGTGATGGTTCTAGAATGTCTAATCTCGGTG 959
||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |
Sbjct 954 TGAAGGGTCTCGACGATCTTCCTGACAAGCGTGATGGCTCGAGAATGTCGAATCTCGGGG 1013
Query 960 GAAATCTTGCAATTATGTTTAACCTTGGGAAGGGATCAACCAAAATATGTTGCACGGAGA 1019
|||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 1014 GAAATCTTGCGATTATGTTTAACCTTGAGAAGGGTTCAACCAAAATCTGTTGCACGGAGA 1073
Query 1020 TCAGATTGGAAAGGAGAGAAGGAGGAAAGTTTTGGGGGACGGTTCTGTGGTCTAATATCG 1079
|||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 1074 TCAGATTGGAAAGGAGGGAAGGAGGAAAGATTTGGGGGACGGTCCTGTGGTCTAATATTG 1133
Query 1080 TGATTACCTTGAAAGAACCTTCCACCATTGTACGATGTCTAGCTGTAACTGTTTGATAAA 1139
| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1134 TCATTACCTTGAAAGAACCTTCCACCATTGTACGATGTCTAACTGTAACAGTTTGATAAA 1193
Query 1140 GCTTCAAGCTTGAAAATC-T----GTAAACGTGTACCGAAGCAGCTTGGTCTGTTCAAGA 1194
|||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||
Sbjct 1194 GCTTCAAGCTTGAAAATCATATCTGTAAACGTGTACCGGAGCAGCTTGTTCTGTTCAAGA 1253
Query 1195 TGAAACAAACAACATACTAGGCTTTATTGGATGTTGGTATCCAGAACCTAATATAGATAT 1254
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1254 TGAAACAAACAACATACGAGGCTTTATTGGATATTGGTATCCAGAACCTAATATAGATAT 1313
Query 1255 CTTTTTGGATCTATGGGCTAAGTTATGTAAtttttttCTCTTGTTTCTTTGTTGTACGAC 1314
||||| ||| || |||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 1314 CTTTT-GGAACTTTGGGCTAAGTTATGCAATATATTTCTCTTGTTTCTTTGTTGTACGAC 1372
Query 1315 TCTTATGTATGCATTATGCAAGTATACTGTATGATCAATAGCTACTATGTTACCAGCTGT 1374
||||||||||||| | | | ||| |||||||| ||||| |||||||||||||||||
Sbjct 1373 TCTTATGTATGCA--A-GTA--TAT--TGTATGATTAATAGAAACTATGTTACCAGCTGT 1425
Query 1375 TTGG----CAAAGATCAAACCAATAACATTTG 1402
||| ||||||||||||||||||||||||
Sbjct 1426 TTGTTTAACAAAGATCAAACCAATAACATTTG 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5