BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490700 Length=788 Score E Sequences producing significant alignments: (Bits) Value AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circ... 760 0.0 AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circ... 300 2e-80 > AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circadian rhythm, and RNA binding 1 | chr4:18273899-18275079 REVERSE LENGTH=898 Length=898 Score = 760 bits (411), Expect = 0.0 Identities = 713/846 (84%), Gaps = 71/846 (8%) Strand=Plus/Plus Query 1 GTTATTACGTCACACCTCTTCTATAAATTAAGGCTGCGTCTTATCATCC-CAAATCATAC 59 ||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| | Sbjct 8 GTTATTACGTCACACCTGTTCTATAAATTAAGGCTGCGTCTTATCA-CCTCAAATCACAT 66 Query 60 AAGtctctctc-t-c----t------c--A-TT-T-TTCGAAACCCTaaaaaaaaaTGTC 102 ||||||||||| | | | | | || | ||| ||| ||||||||||||| Sbjct 67 AAGTCTCTCTCTTACATTTTGAAACCCTAATTTCTCTTCTTTTCCCCAAAAAAAAATGTC 126 Query 103 AGAAGTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCCAA-GATCAAGATC 161 ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| Sbjct 127 TGAAGTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCA-CCAATGATGAAGATC 185 Query 162 TAGAAAGGACCTTCTCACAATTCGGCGACGTTCTCGATTCTAAGATCATTAACGATCGCG 221 | ||||||| |||||||| |||||||||||| |||||||||||||||||||||| |||| Sbjct 186 TTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGATCATTAACGACCGCG 245 Query 222 AGACTGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGG 281 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 AGAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGG 305 Query 282 ACGCGATTGAGGAGATGAACGGAAAAGAGCTCGATGGACGTACCATCACCGTGAACGAGG 341 | |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 306 ATGCGATTGAAGAGATGAACGGTAAAGAGCTCGATGGACGTGTCATCACCGTGAACGAGG 365 Query 342 CACAGTCAAGAGGTAGCGGCGGTGG---AGGAGGCCGTGGAGGCGGTGGAGGTGGTTACC 398 | ||||| ||||||||||||||||| |||||||||||| || | || |||||||||| Sbjct 366 CTCAGTCGAGAGGTAGCGGCGGTGGCGGAGGAGGCCGTGGTGGAAGCGGTGGTGGTTACC 425 Query 399 GCAGCGGAGGCGGTGGCGGATACGGAGGAGGAGGTGGTGGT---TACG-AG-AG-ACGTA 452 |||||||||||||||| |||||| |||||| ||||| || ||| || || | | Sbjct 426 GCAGCGGAGGCGGTGGTGGATACTCAGGAGGCGGTGGCGGCGGATACTCAGGAGGAGGCG 485 Query 453 gtggaggttacg-gat-c-tggtggagg---cgg-t--ggtggccgaggaggagg---ag 500 |||| ||||||| || | | | ||||| ||| | ||||| | || || || || Sbjct 486 GTGGTGGTTACGAGAGACGTAGCGGAGGTTACGGATCTGGTGGAGGCGGTGGTGGCCGAG 545 Query 501 gatacggtggtggtggtggtcgccgtgagggaggtggctacggaggaggtgACGGTGGAA 560 |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| Sbjct 546 GATACGGTGGTGGTGGA---CGCCGTGAGGGAGGTGGCTACGGAGGCGGTGATGGTGGAA 602 Query 561 GTTACGGAGGAAGCGGTGGAGGTGGCTGGTAATCAAAGAT----T-G----C---C-GAT 607 |||||||||| |||||| || ||||||||||||||||| | | | | | | Sbjct 603 GTTACGGAGG---CGGTGGTGGCGGCTGGTAATCAAAGATAGAGTTGTTTGCGTGCTGCT 659 Query 608 -CT--GTTTTTGGTTTAGATTTGGTTTTGTGTCACCGTTTGTCTCTGGTTTGGTTATCGT 664 || ||||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct 660 GCTCTGTTTTTGGTTTAGATTTGGTTTTGTGTCACCACTT--CT--GGTTTGGTTATCGT 715 Query 665 TCGTTTGGTTTACTTTTTTGATGAAACA-TATCGTTTAAAGTCTTCTTTGTCTGGAACGA 723 |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| Sbjct 716 TCGTTTGGTTTACTTTTTTGATGAAACAGTTTCGTTTAA-GTCTTCTTTGTCTGGAACGA 774 Query 724 AATGTTAATTCGCGTGTTGTTCACTAAATT-ATAAGGTTTCCTCTTAACCAGATTTGAGA 782 ||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||| |||| Sbjct 775 AATGTTAATTCGCGTGTTGTTTACTAAATTTATAACGTTTCCTTTTAACCAGATTCGAGA 834 Query 783 TTTTCC 788 |||||| Sbjct 835 TTTTCC 840 > AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circadian rhythm, and rna binding 2 | chr2:9265249-9266393 REVERSE LENGTH=836 Length=836 Score = 300 bits (162), Expect = 2e-80 Identities = 287/347 (83%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 107 GTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCCAAGATCA-AGATCTAGA 165 |||||||| |||||||| || || || || || |||||||| | || || || ||| || Sbjct 93 GTTGAGTATCGGTGCTTCGTTGGAGGTCTAGCATGGGCCACTGATGA-CAGAGCTCTTGA 151 Query 166 -AAGGACCTTCTCACAATTCGGCGACGTTCTCGATTCTAAGATCATTAACGATCGCGAGA 224 | | ||||| | |||| |||||||||| | ||||| ||||||||||||||||| |||| Sbjct 152 GACTG-CCTTCGCTCAATACGGCGACGTTATTGATTCCAAGATCATTAACGATCGTGAGA 210 Query 225 CTGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGGACG 284 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct 211 CTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGATGAGAAAGCCATGAAGGATG 270 Query 285 CGATTGAGGAGA-TGAACGGAAAAGAGCTCGATGGACGTACCATCACCGTGAACGAGGCA 343 ||||||||| || |||||||| |||| |||||||| |||| |||||| || |||||||| Sbjct 271 CGATTGAGG-GAATGAACGGACAAGATCTCGATGGCCGTAGCATCACTGTTAACGAGGCT 329 Query 344 CAGTCAAGAGGTAGCGGCGGTGGAGGAGGCC---GTGGAGGCGGTGGAGGTGGTTACCGC 400 |||||| |||| ||||| || || ||||||| ||||||| ||||| ||||| |||||| Sbjct 330 CAGTCACGAGGAAGCGGTGGCGGCGGAGGCCACCGTGGAGGTGGTGGCGGTGGATACCGC 389 Query 401 AGCGGAGGCGGTGGCGGATACGGAGGAGGAGGTGGTGGTTACGAGAG 447 ||||| || ||||| || ||| || ||||||||| | |||| ||| Sbjct 390 AGCGGCGGTGGTGGAGGTTACTCCGGTGGAGGTGGTAGCTACG-GAG 435 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38328654161 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5